BAC Information

Click to search

BAC

Clone NameB6Ng01-097D08
Chromosome1 (Build37)
Map Location 57,844,032 - 57,992,452
singlet/doubletdoublet
Overlap gene2810022L02Rik
Upstream geneSatb2, EG329160, 9130024F11Rik, LOC100042869, LOC383509, 1700066M21Rik, 1110034B05Rik, 9430016H08Rik, LOC667339
Downstream geneKctd18, Sgol2, Aox1, Aox3, Aox4, Aox3l1, EG628262, Bzw1, Clk1, Ppil3, Nif3l1, Orc2l, BC049806, Ndufb3, EG667397, Als2cr12, Cflar, LOC100042431, Casp8, EG667419, Trak2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097D08.bB6Ng01-097D08.g
ACCDH907643DH907644
length927325
definitionDH907643|Mus musculus domesticus DNA, BAC clone: B6Ng01-097D08, 5' end.DH907644|Mus musculus domesticus DNA, BAC clone: B6Ng01-097D08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,844,032 - 57,844,958)(57,992,128 - 57,992,452)
sequence
gaattcttcctcctgctgttggccttgcaatggccctttgccacacctca
gaataggctgggatcttcggagagctcctgtattcagtacaatactcaaa
ccttttttcttttcagggtgacttggtccaggtgtcaaccacggctcctc
atcctgctagctctcttctaccttactgtccgtttcttctagatgtgggc
tctccacttcagcatcctaagcccaagattctgagaggcagagaacacag
aactacttagctctcttgaccatgggtgatcttcattagccagattcagt
gatggcctcctttgtaagccaaggccagcacatctctagtttgtctatac
aaaggcaaatcaatgttccatgtctttttcttaagacccactacagtgct
gggatccttccctgcccaagcagtcagttctgaatcagaggattcattca
gagggttccacatctgtctttagggctgttgttgtcaagttgttttttcc
tcattatcaagaccattttgatatccagtttttaattgtttgttagtgat
actttcattaacttatcatgtgggtgtttgagtttgtggtttggtttggg
caatggaaccagggctttcccatacacggggcaaggactctgtcactgag
tcacacacacacacacacacacacacacacacacacacacacacaccttc
actctccctagctctaaacacctggagtctgttttctttctccaagagac
ttcagcatgagaattttgttagtttttaaaataaaaaatctagtatgatg
atcccacatttactttgttgtcaaagaggatacaacaaggggatgtctta
gcccagcacatagtggcgctcaccgttgggtctgtttattacacattaca
gaatctctttttgagcgaaacaagact
tttgtagtacctgtacacagtgcacagcagaggcaagggaactgaatgaa
gggctcattgattggatgggcccattaatggaaaggaaatcaaaataaga
actgaagttcctgtcccactcaagattgtctaggtctagggctgggaagc
tggctctgtgggtaaaatgttaaacatatccagatctccagctctcatgt
gaaaagctgggcaaggctgtgcttgtcagtatcctcaaaaactaggctgg
ggaatgttaggggaggaggacattctatactgagctccatactctgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_57844032_57844958
seq2: B6Ng01-097D08.b_45_971

seq1  GAATTCTTCCTCCTGCTGTTGGCCTTGCAATGGCCCTTTGCCACACCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTCCTGCTGTTGGCCTTGCAATGGCCCTTTGCCACACCTCA  50

seq1  GAATAGGCTGGGATCTTCGGAGAGCTCCTGTATTCAGTACAATACTCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGGCTGGGATCTTCGGAGAGCTCCTGTATTCAGTACAATACTCAAA  100

seq1  CCTTTTTTCTTTTCAGGGTGACTTGGTCCAGGTGTCAACCACGGCTCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTTCTTTTCAGGGTGACTTGGTCCAGGTGTCAACCACGGCTCCTC  150

seq1  ATCCTGCTAGCTCTCTTCTACCTTACTGTCCGTTTCTTCTAGATGTGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGCTAGCTCTCTTCTACCTTACTGTCCGTTTCTTCTAGATGTGGGC  200

seq1  TCTCCACTTCAGCATCCTAAGCCCAAGATTCTGAGAGGCAGAGAACACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACTTCAGCATCCTAAGCCCAAGATTCTGAGAGGCAGAGAACACAG  250

seq1  AACTACTTAGCTCTCTTGACCATGGGTGATCTTCATTAGCCAGATTCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACTTAGCTCTCTTGACCATGGGTGATCTTCATTAGCCAGATTCAGT  300

seq1  GATGGCCTCCTTTGTAAGCCAAGGCCAGCACATCTCTAGTTTGTCTATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCCTCCTTTGTAAGCCAAGGCCAGCACATCTCTAGTTTGTCTATAC  350

seq1  AAAGGCAAATCAATGTTCCATGTCTTTTTCTTAAGACCCACTACAGTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCAAATCAATGTTCCATGTCTTTTTCTTAAGACCCACTACAGTGCT  400

seq1  GGGATCCTTCCCTGCCCAAGCAGTCAGTTCTGAATCAGAGGATTCATTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCCTTCCCTGCCCAAGCAGTCAGTTCTGAATCAGAGGATTCATTCA  450

seq1  GAGGGTTCCACATCTGTCTTTAGGGCTGTTGTTGTCAAGTTGTTTTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTTCCACATCTGTCTTTAGGGCTGTTGTTGTCAAGTTGTTTTTTCC  500

seq1  TCATTATCAAGACCATTTTGATATCCAGTTTTTAATTGTTTGTTAGTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATCAAGACCATTTTGATATCCAGTTTTTAATTGTTTGTTAGTGAT  550

seq1  ACTTTCATTAACTTATCATGTGGGTGTTTGAGTTTGTGGTTTGGTTTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCATTAACTTATCATGTGGGTGTTTGAGTTTGTGGTTTGGTTTGGG  600

seq1  CAATGGAACCAGGGCTTTCCCATACACGGGGCAAGGACTCTGTCACTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGAACCAGGGCTTTCCCATACACGGGGCAAGGACTCTGTCACTGAG  650

seq1  TCACACACACACACACACACACACACACACACACACACACACACACCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACACACACACACACACACACACACACACACACACACACACACCTTC  700

seq1  ACTCTCCCTAGCTCTAAACACCTGGAGTCTG-TTTCTTTCTCCAAGAGAC  749
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACTCTCCCTAGCTCTAAACACCTGGAGTCTGTTTTCTTTCTCCAAGAGAC  750

seq1  TTCAGCATGAGAATTTTGTTAGTTTTTAAAATAAAAAATCTAGTATGATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCATGAGAATTTTGTTAGTTTTTAAAATAAAAAATCTAGTATGATG  800

seq1  ATCCCACATTTACTTTGTTGTCAAAGAGGATACAACAAGGGGATGTCTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCACATTTACTTTGTTGTCAAAGAGGATACAACAAGGGGATGTCTTA  850

seq1  GCCCAGCACATTAGTGGCGCTCACCGTT-GGTCTGTTTATTACACATTAC  898
      |||||||||| ||||||||||||||||| |||||||||||||||||||||
seq2  GCCCAGCACA-TAGTGGCGCTCACCGTTGGGTCTGTTTATTACACATTAC  899

seq1  AGAATCTCTTTTATGAGCGAAACAAGACT  927
      |||||||||||| ||||||||||||||||
seq2  AGAATCTCTTTT-TGAGCGAAACAAGACT  927

seq1: chr1_57992128_57992452
seq2: B6Ng01-097D08.g_75_399 (reverse)

seq1  ACACACACACACACACACACACACACACACAGAGTATGGAGCTCAGTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACAGAGTATGGAGCTCAGTATA  50

seq1  GAATGTCCTCCTCCCCTAACATTCCCCAGCCTAGTTTTTGAGGATACTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTCCTCCTCCCCTAACATTCCCCAGCCTAGTTTTTGAGGATACTGA  100

seq1  CAAGCACAGCCTTGCCCAGCTTTTCACATGAGAGCTGGAGATCTGGATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACAGCCTTGCCCAGCTTTTCACATGAGAGCTGGAGATCTGGATAT  150

seq1  GTTTAACATTTTACCCACAGAGCCAGCTTCCCAGCCCTAGACCTAGACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAACATTTTACCCACAGAGCCAGCTTCCCAGCCCTAGACCTAGACAA  200

seq1  TCTTGAGTGGGACAGGAACTTCAGTTCTTATTTTGATTTCCTTTCCATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGTGGGACAGGAACTTCAGTTCTTATTTTGATTTCCTTTCCATTA  250

seq1  ATGGGCCCATCCAATCAATGAGCCCTTCATTCAGTTCCCTTGCCTCTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCCCATCCAATCAATGAGCCCTTCATTCAGTTCCCTTGCCTCTGCT  300

seq1  GTGCACTGTGTACAGGTACTACAAA  325
      |||||||||||||||||||||||||
seq2  GTGCACTGTGTACAGGTACTACAAA  325