BAC Information

Click to search

BAC

Clone NameB6Ng01-097E11
Chromosome1 (Build37)
Map Location 150,069,740 - 150,070,909
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100042792, LOC435647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097E11.bB6Ng01-097E11.g
ACCDH907696DH907697
length9661,139
definitionDH907696|Mus musculus domesticus DNA, BAC clone: B6Ng01-097E11, 5' end.DH907697|Mus musculus domesticus DNA, BAC clone: B6Ng01-097E11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcatattggttccctgaactgtaaagtgagggctattatggttg
gaaaggccaaatggaagcctttagagttgcctctgccaaagaaaatagtg
aatcaaaaacagtatcgtattcctggaggaattgcagaaattactgccac
tatcaaggacttgaaagatgcaggggtggtggttcccaccacatctccgt
ttaactctcctatctggccagtgcagaaaacagatggatcatggagaatg
acagttgattatcgaaaactaaatcaggtagtaactccaattgcagctgc
tgtaccagatgtagtttcgttacttgagcaaattaacacatctcctggca
cctggtatgcggctattgatctggcaaatgccttcttctcagtacctgtc
cataaggaccaccagaagcaatttgctttcagttggcaaggccaacagta
taccttcacagttttgcctcaaggatatattaactctcctgccctgtgtc
ataatttagttagaagggatcttgatcgtttggatcttccacaaaatatc
acattggtgcactatattgatgacattatgctgattggaccaagtgagca
ggaagtagcaaccactttggactcattggtaacacatatgcgtatcagag
gatgggaaataaatccaaccaaaaattcaaggaccatctacctcagtgaa
attcttaggagtccagtggtgtggggcatgcagagatattccttctaagg
tgaaagataagttattgcacctggcccctcctacaaccaagaaagaagca
caacgttttagtgggtctatttggattctggagacaacacatccctcact
tgggtgtgttacttaggcctatttaccaagtgactcggaaagctgctagc
tttgtgtggggcctggaacaggagaaggcccttcaacaggtcaggctgct
gtgcaggttgctctac

gaattcaacttggagacagtttgtctatgctacgaccatgcataaaattt
ctgagaaacaaatgttacttccaacaggaatgttagtatagtatgtagaa
attcattatattgtgtggaatacatatagagtatcaattactccacgtta
cccaagctgaagactgagactgtggtacctaaacaaccttcacttttcac
tgtaagatgagcaggcattattaatgccaattgatagaagaaatgaccac
taaatttttctccctgaaaaatactagtgtgacttctttatcagctctgt
ttgttatgcacatttccttgattgttgatgttaaaggtaaatgtcttgac
tctatgattccacacatacaatttaccaaatctgcagatcttgaaaaaaa
tcacttactacctctaagatttttgattcttctattaagcataattaata
ataccgatgctaaatgattatgacgaagattaaaacaatgcatttaaaga
ccatttatcatacttcctgaccacatgatacatacagttattaaatgctg
ctcttatatctcttgttcattatttgatgctcccagcagcatgttgttct
tattttctctaaagttgacaatcagtgacaaatctggatgtaatgacata
gcttttgaaataaaaattaccatgtttttctcttttggggggaagatttg
actaatatctaaagaccacttcatacacacacacacacacacacacacac
acagacagagagttaatccaggaaatctggaacactataaaaatactaaa
cctaataattaaggataggcatagaggaaggagaaaacccaacccaaagt
ctgagaagatgttttcacaaattatagagaaaatttcctaaccttaagag
gagaggtatacgattaaagaaatggaaaaacaatatagttggactaggaa
agaagtcatctcaccatgtaatactaaaagcacttaatatgaaaaacaag
aaagatactaaagctgaggggaaaataccaagtacccagaaaagcagacg
tttagaagtataccttatttctcattagactctgagtgagatggactaga
cgatttgtagatctgaggacccgaggccactcaatctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_150069740_150070909
seq2: B6Ng01-097E11.g_70_1208

seq1  GAATTCAACTTGGAGACAGTTTGTCTATGCTACGACCATGCATAAAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTTGGAGACAGTTTGTCTATGCTACGACCATGCATAAAATTT  50

seq1  CTGAGAAACAAATGTTACTTCCAACAGGAATGTTAGTATAGTATGTAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAACAAATGTTACTTCCAACAGGAATGTTAGTATAGTATGTAGAA  100

seq1  ATTCATTATATTGTGTGGAATACATATAGAGTATCAATTACTCCACGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTATATTGTGTGGAATACATATAGAGTATCAATTACTCCACGTTA  150

seq1  CCCAAGCTGAAGACTGAGACTGTGGTACCTAAACAACCTTCACTTTTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGCTGAAGACTGAGACTGTGGTACCTAAACAACCTTCACTTTTCAC  200

seq1  TGTAAGATGAGCAGGCATTATTAATGCCAATTGATAGAAGAAATGACCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGATGAGCAGGCATTATTAATGCCAATTGATAGAAGAAATGACCAC  250

seq1  TAAATTTTTCTCCCTGAAAAATACTAGTGTGACTTCTTTATCAGCTCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTTTCTCCCTGAAAAATACTAGTGTGACTTCTTTATCAGCTCTGT  300

seq1  TTGTTATGCACATTTCCTTGATTGTTGATGTTAAAGGTAAATGTCTTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATGCACATTTCCTTGATTGTTGATGTTAAAGGTAAATGTCTTGAC  350

seq1  TCTATGATTCCACACATACAATTTACCAAATCTGCAGATCTTGAAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGATTCCACACATACAATTTACCAAATCTGCAGATCTTGAAAAAAA  400

seq1  TCACTTACTACCTCTAAGATTTTTGATTCTTCTATTAAGCATAATTAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTACTACCTCTAAGATTTTTGATTCTTCTATTAAGCATAATTAATA  450

seq1  ATACCGATGCTAAATGATTATGACGAAGATTAAAACAATGCATTTAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCGATGCTAAATGATTATGACGAAGATTAAAACAATGCATTTAAAGA  500

seq1  CCATTTATCATACTTCCTGACCACATGATACATACAGTTATTAAATGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTATCATACTTCCTGACCACATGATACATACAGTTATTAAATGCTG  550

seq1  CTCTTATATCTCTTGTTCATTATTTGATGCTCCCAGCAGCATGTTGTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTATATCTCTTGTTCATTATTTGATGCTCCCAGCAGCATGTTGTTCT  600

seq1  TATTTTCTCTAAAGTTGACAATCAGTGACAAATCTGGATGTAATGACATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTCTAAAGTTGACAATCAGTGACAAATCTGGATGTAATGACATA  650

seq1  GCTTTTGAAATAAAAATTACCATGTTTTTCTCTTTTGGGGGGAAGATTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGAAATAAAAATTACCATGTTTTTCTCTTTTGGGGGGAAGATTTG  700

seq1  ACTAATATCTAAAGACCACTTCATACACACACACACACACACACACACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATATCTAAAGACCACTTCATACACACACACACACACACACACACAC  750

seq1  ACAGACAGAGAGTTAATCCAGGAAATCTGGAACACTATAAAAATACTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAGAGAGTTAATCCAGGAAATCTGGAACACTATAAAAATACTAAA  800

seq1  CCTAATAATTAAGGATAGGCATAGAGGAAGGAGAAAAACCCAACCCAAAG  850
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCTAATAATTAAGGATAGGCATAGAGGAAGGAG-AAAACCCAACCCAAAG  849

seq1  TCTGAGAAGATGTTTTCAACAAAATTATAGAGAAAATTTTCCTAACCTTA  900
      ||||||||||||||||||   ||||||||||||||| |||||||||||||
seq2  TCTGAGAAGATGTTTTCA--CAAATTATAGAGAAAA-TTTCCTAACCTTA  896

seq1  AGAAGGAGAGGTATAACGATTAAAAGAAAATGGAAAAAACAATATAGGTT  950
      || ||||||||||| |||||||||   |||||| |||||||||||| |||
seq2  AG-AGGAGAGGTAT-ACGATTAAA--GAAATGG-AAAAACAATATA-GTT  940

seq1  GGACTAGGAAAGAAAGTCATCTCACCATGTAATACTAAAAGCACTAAATA  1000
      |||||||||||| |||||||||||||||||||||||||||||||| ||||
seq2  GGACTAGGAAAG-AAGTCATCTCACCATGTAATACTAAAAGCACTTAATA  989

seq1  TGAAAAACAAAGAAAGAATACTAAAGCTGAAGGGGAAAAATACCAAGTAA  1050
      |||||||| ||||||| |||||||||||||  ||| |||||||||||| |
seq2  TGAAAAAC-AAGAAAG-ATACTAAAGCTGA--GGGGAAAATACCAAGT-A  1034

seq1  CCCAGAAAAGCAGACGTATTAGAAGTATACCTTATTTCTCAATAGAAACT  1100
      ||||||||||||||||| ||||||||||||||||||||||| |||  |||
seq2  CCCAGAAAAGCAGACGT-TTAGAAGTATACCTTATTTCTCATTAG--ACT  1081

seq1  CTAGAAGTGAGAATGGACTAGACAGATGTGGTACAGAATCTGAGGAACCA  1150
      ||   |||||| ||||||||||| ||| | |||    ||||||||| || 
seq2  CT--GAGTGAG-ATGGACTAGAC-GAT-TTGTA---GATCTGAGGACCC-  1122

seq1  CAGAAGCCACTCAAATCTAT  1170
        || ||||||| |||||||
seq2  --GAGGCCACTC-AATCTAT  1139


| Home | SequenceCutter | Blast | Download |