BAC Information

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BAC

Clone NameB6Ng01-097E15
Chromosome1 (Build37)
Map Location 134,350,853 - 134,445,843
singlet/doubletdoublet
Overlap geneRipk5, Rbbp5, Tmem81, Cntn2
Upstream geneSrgap2, 2700049P18Rik, Avpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1, Rab7l1, Nucks1, Slc45a3, Elk4, Mfsd4, Pctk3, LOC100042221, Lemd1, EG638532, Klhdc8a, Nuak2, Tmcc2
Downstream geneNfasc, Lrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b, Plekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097E15.bB6Ng01-097E15.g
ACCDH907704DH907705
length1,1091,197
definitionDH907704|Mus musculus domesticus DNA, BAC clone: B6Ng01-097E15, 5' end.DH907705|Mus musculus domesticus DNA, BAC clone: B6Ng01-097E15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,350,853 - 134,351,955)(134,444,658 - 134,445,843)
sequence
gaattctgttaaacacctagtcttacttaattactaccaatgttccttta
acgctttaaaaagctatacatttatataacacttgataaagccacaaaat
tctacatcattaggtttttttcatctgtaaagacagtaaagactcagcct
aaatgtttcctcaaaactaggtattagttgggcgtggtggtgcacgcctt
taatcccggccctcgggcggcagaggcaggcagatttttgagttcgaggc
cagcctggtctgcaaagtgagttccaggacagccagggctacacagagaa
accctgtctcgaaaaacacacacacacacacacacacacacacacacaca
cacacacacacaaaacaaaacaaaaactaggtattgttggggctggggat
gtagcttggtgacagatggtttgcctcacatatgcaacaccacaggtttg
attccccagtaccacaagaacgaacaagtaaacaaacaacaaaaatccag
acagagtcgatgatggtggtgcagcctttaatcccaccattgaagaggca
gtggcaggcagatctctgtgaattcaaggccagcccggtctacatagaaa
gttccaggacagccagggctatgtagagagagatcctgtctgaaacaaaa
aagcaaacacacaaaaaactacacattgctgttaggggccaagagtgtgg
gtcctgtcctgtccctgtccctgaacagaatacattgagggctgcgagca
tttagatcaggcttactggtcgttggtgcctacctctggctgaactctgg
gtttcaggtaggcagtgttagagttgaggttggatttcataggctctgag
ttagggtgctcctggtgagagactgcatagaaggaagggcatttgttgga
gctgcctgggagtgccttctccctcccttcaatgatctcactgtcctctt
ctttggcagatcatccagcgtatcacatgggttaacccacccaccatcac
ttctagagtggaagaggaaggtggcccaagaagtcatcgacagctctcat
gccttctaagttggcccaagagcatttgcatgcagttccgacagcgcctc
aatatttct
gaattcacagcgtctgtggttacctgatctgcacaagttagagcccatcc
tttcccaggagggggatgaactcatgggaccccactccttctttagaatt
taaaccggggttaatgacagaggggacgggaggagaggtgtttcgtcact
agcgtagcgatgataagatgcccatgttcttaaacaaactctcaccatgt
gcctgtaaacaatactgatgaaacacattgggtcaccaccaaaaaaaaag
aaaaaagaaataaaaagaagacatcagcgtagaaggaaggctagttgagg
ggaggaaagagattggctggaatgggaggggaataagagaaggtagcaaa
ggggacatcaaaacccattatgcacatgtatgaaaatgtcataacgaaac
cattactatatagaatttatatagataataaaggcatttttacaaagaac
attcaaaggctacctgtctacttcagcatcatcgctacccctaaacccgt
tgcctcatttcctctcccaccccagagagtatgcttcttgccagaaccaa
aaggtgcctgtacaagggctgtcctcctcagatctcaatgcaggacaaaa
ctcaggcaggatacaccagcaccactcctagtgcagctccaccccgctgc
tctgcagccctggcctggccattgcctttgctggctccagcttcccagtg
ccttgctccctccccactgccttacccctgtcctccaccctcccactgcc
tgtgatagccaaattgtttcaaaagaaaaaaaaaagaaaaggaaaaaata
aaagaaagaagaactcagggttctttgagttatgtggagagaccacataa
aatgcaggcattattagcatcattaccataaatattaaataatggcatag
cattgtcttatataagccttaaaaaagaagcttcgggagcccagggtttg
aaatggtcaagagtataatgaggcccctctgggccggtggactcctccag
gcttcttaagtgaattaaggaaagcaaatgccataggataggagtatcaa
agaaatcctcccaatatcaggtccacctcactcctgggacactagttccc
ccttgctcaggccacacgtccaggcttctggcccccccatatcctagccc
aggaaaacatgcccgaactttctctccactgttaaggtccaatctag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_134350853_134351955
seq2: B6Ng01-097E15.b_45_1153

seq1  GAATTCTGTTAAACACCTAGTCTTACTTAATTACTACCAATGTTCCTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTAAACACCTAGTCTTACTTAATTACTACCAATGTTCCTTTA  50

seq1  ACGCTTTAAAAAGCTATACATTTATATAACACTTGATAAAGCCACAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTTTAAAAAGCTATACATTTATATAACACTTGATAAAGCCACAAAAT  100

seq1  TCTACATCATTAGGTTTTTTTCATCTGTAAAGACAGTAAAGACTCAGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATCATTAGGTTTTTTTCATCTGTAAAGACAGTAAAGACTCAGCCT  150

seq1  AAATGTTTCCTCAAAACTAGGTATTAGTTGGGCGTGGTGGTGCACGCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTCCTCAAAACTAGGTATTAGTTGGGCGTGGTGGTGCACGCCTT  200

seq1  TAATCCCGGCCCTCGGGCGGCAGAGGCAGGCAGATTTTTGAGTTCGAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCGGCCCTCGGGCGGCAGAGGCAGGCAGATTTTTGAGTTCGAGGC  250

seq1  CAGCCTGGTCTGCAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGTCTGCAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAA  300

seq1  ACCCTGTCTCGAAAAACACACACACACACACACACACACACACACACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTCTCGAAAAACACACACACACACACACACACACACACACACACA  350

seq1  CACACACACACAAAACAAAACAAAAACTAGGTATTGTTGGGGCTGGGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACAAAACAAAACAAAAACTAGGTATTGTTGGGGCTGGGGAT  400

seq1  GTAGCTTGGTGACAGATGGTTTGCCTCACATATGCAACACCACAGGTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTTGGTGACAGATGGTTTGCCTCACATATGCAACACCACAGGTTTG  450

seq1  ATTCCCCAGTACCACAAGAACGAACAAGTAAACAAACAACAAAAATCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCCAGTACCACAAGAACGAACAAGTAAACAAACAACAAAAATCCAG  500

seq1  ACAGAGTCGATGATGGTGGTGCAGCCTTTAATCCCACCATTGAAGAGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTCGATGATGGTGGTGCAGCCTTTAATCCCACCATTGAAGAGGCA  550

seq1  GTGGCAGGCAGATCTCTGTGAATTCAAGGCCAGCCCGGTCTACATAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGGCAGATCTCTGTGAATTCAAGGCCAGCCCGGTCTACATAGAAA  600

seq1  GTTCCAGGACAGCCAGGGCTATGTAGAGAGAGATCCTGTCTGAAACAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGGACAGCCAGGGCTATGTAGAGAGAGATCCTGTCTGAAACAAAA  650

seq1  AAGCAAACACACAAAAAACTACACATTGCTGTTAGGGGCCAAGAGTGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAACACACAAAAAACTACACATTGCTGTTAGGGGCCAAGAGTGTGG  700

seq1  GTCCTGTCCTGTCCCTGTCCCTGAACAGAATACATTGAGGGCTGCGAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGTCCTGTCCCTGTCCCTGAACAGAATACATTGAGGGCTGCGAGCA  750

seq1  TTTAGATCAGGCTTACTGGTCGTTGGTGCCTACCTCTGGCTGAACTCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATCAGGCTTACTGGTCGTTGGTGCCTACCTCTGGCTGAACTCTGG  800

seq1  GTTTCAGGTAGGCAGTGTTAGAGTTGAGGTTGGATTTCATAGGCTCTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGGTAGGCAGTGTTAGAGTTGAGGTTGGATTTCATAGGCTCTGAG  850

seq1  TTAGGGTGCTCCTGGTGAGAGACTGCAGAGAAGGAAGGGCA-TTGTTGGA  899
      ||||||||||||||||||||||||||| ||||||||||||| ||||||||
seq2  TTAGGGTGCTCCTGGTGAGAGACTGCATAGAAGGAAGGGCATTTGTTGGA  900

seq1  GCTGCCTGGGAGTGCCTTCT-CCTTCCTTCAATGATCTCACTGTCCTCAT  948
      |||||||||||||||||||| ||| ||||||||||||||||||||||| |
seq2  GCTGCCTGGGAGTGCCTTCTCCCTCCCTTCAATGATCTCACTGTCCTCTT  950

seq1  C-TTGGCAGATCATCCAGCGTATCACATGGGTGAACCCACCCACCATCAC  997
      | |||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTTTGGCAGATCATCCAGCGTATCACATGGGTTAACCCACCCACCATCAC  1000

seq1  -TCTAGAGTGGAAGAGGAAGGTGGCCCAGGAAGCCATCGACAGC-CTCAG  1045
       ||||||||||||||||||||||||||| |||| |||||||||| |||| 
seq2  TTCTAGAGTGGAAGAGGAAGGTGGCCCAAGAAGTCATCGACAGCTCTCAT  1050

seq1  CGCCTCCAAGTTGG-CCAAGAGCATTTGCAGCCAGTTCCGCACGCGGCTC  1094
        | || ||||||| |||||||||||||||  ||||||||   ||| |||
seq2  GCCTTCTAAGTTGGCCCAAGAGCATTTGCATGCAGTTCCGACAGCGCCTC  1100

seq1  AATAGTTCT  1103
      |||| ||||
seq2  AATATTTCT  1109

seq1: chr1_134444658_134445843
seq2: B6Ng01-097E15.g_70_1266 (reverse)

seq1  CTAGATTGGA-CTGCACAGGTGAGAGAAAG-TCGGGGATGTTTTCCTGGC  48
      |||||||||| ||  ||||  ||||||||| ||||| |||||||||||| 
seq2  CTAGATTGGACCTTAACAGTGGAGAGAAAGTTCGGGCATGTTTTCCTGGG  50

seq1  ATGGGGTATGGGGGTGGCAGAAGCCTGGACGTGTGGCCTGTGCAAGGGGG  98
       | || |||||||| | ||||||||||||||||||||||| |||||||||
seq2  CTAGGATATGGGGGGGCCAGAAGCCTGGACGTGTGGCCTGAGCAAGGGGG  100

seq1  ACTTAGTG--CCAGGAGTGAGGTTGACCTG--AATAGGAGGAAATCTTCG  144
      |  |||||  ||||||||||||| ||||||  | | ||||||  |||| |
seq2  AACTAGTGTCCCAGGAGTGAGGTGGACCTGATATTGGGAGGATTTCTTTG  150

seq1  -TACT-CTATCC--TTGCATTTGCCTTCCTAATTTCACTTAAG-AGCCTG  189
       |||| ||||||  | |||||||| ||||| | |||||||||| ||||||
seq2  ATACTCCTATCCTATGGCATTTGCTTTCCTTAATTCACTTAAGAAGCCTG  200

seq1  GAGGGGTCCA-CGGCCCAGAGGGGCCTCATTATTCTCTTTGCCATTTC-A  237
      |||| ||||| |||||||||||||||||||||| |||||  ||||||| |
seq2  GAGGAGTCCACCGGCCCAGAGGGGCCTCATTATACTCTTGACCATTTCAA  250

seq1  ACCCTGGGCTCCCGAAGCTTC-TTTTTAAGGCTTATAATAGACAATGCTA  286
      ||||||||||||||||||||| |||||||||||||||  |||||||||| 
seq2  ACCCTGGGCTCCCGAAGCTTCTTTTTTAAGGCTTATATAAGACAATGCT-  299

seq1  ATGCCATTA-TTAATATTTAATGGTAATGATGCTAATAATGCCTGCA-TT  334
      ||||||||| ||||||||| ||||||||||||||||||||||||||| ||
seq2  ATGCCATTATTTAATATTT-ATGGTAATGATGCTAATAATGCCTGCATTT  348

seq1  TATGTGGTCTCTCCACATAGCTCAAAGAACCCTGAGTTCTTTCTTTCTTT  384
      ||||||||||||||||||| ||||||||||||||||||| ||||||| ||
seq2  TATGTGGTCTCTCCACATAACTCAAAGAACCCTGAGTTC-TTCTTTC-TT  396

seq1  TTTTTTTTTCTTTTTCTTTTTTTTTTCTTTTTGAAACAATTTGGCTATCA  434
      || ||||||| |||||||||||||||| ||||||||||||||||||||||
seq2  TTATTTTTTCCTTTTCTTTTTTTTTTC-TTTTGAAACAATTTGGCTATCA  445

seq1  CAGGCAGTGGGAGGGTGGAGGACAGGGGTAAGGCAGTGGGGAGGGAGCAA  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGTGGGAGGGTGGAGGACAGGGGTAAGGCAGTGGGGAGGGAGCAA  495

seq1  GGCACTGGGAAGCTGGAGCCAGCAAAGGCAATGGCCAGGCCAGGGCTGCA  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTGGGAAGCTGGAGCCAGCAAAGGCAATGGCCAGGCCAGGGCTGCA  545

seq1  GAGCAGCGGGGTGGAGCTGCACTAGGAGTGGTGCTGGTGTATCCTGCCTG  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCGGGGTGGAGCTGCACTAGGAGTGGTGCTGGTGTATCCTGCCTG  595

seq1  AGTTTTGTCCTGCATTGAGATCTGAGGAGGACAGCCCTTGTACAGGCACC  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGTCCTGCATTGAGATCTGAGGAGGACAGCCCTTGTACAGGCACC  645

seq1  TTTTGGTTCTGGCAAGAAGCATACTCTCTGGGGTGGGAGAGGAAATGAGG  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTTCTGGCAAGAAGCATACTCTCTGGGGTGGGAGAGGAAATGAGG  695

seq1  CAACGGGTTTAGGGGTAGCGATGATGCTGAAGTAGACAGGTAGCCTTTGA  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGGGTTTAGGGGTAGCGATGATGCTGAAGTAGACAGGTAGCCTTTGA  745

seq1  ATGTTCTTTGTAAAAATGCCTTTATTATCTATATAAATTCTATATAGTAA  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTTTGTAAAAATGCCTTTATTATCTATATAAATTCTATATAGTAA  795

seq1  TGGTTTCGTTATGACATTTTCATACATGTGCATAATGGGTTTTGATGTCC  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCGTTATGACATTTTCATACATGTGCATAATGGGTTTTGATGTCC  845

seq1  CCTTTGCTACCTTCTCTTATTCCCCTCCCATTCCAGCCAATCTCTTTCCT  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCTACCTTCTCTTATTCCCCTCCCATTCCAGCCAATCTCTTTCCT  895

seq1  CCCCTCAACTAGCCTTCCTTCTACGCTGATGTCTTCTTTTTATTTCTTTT  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCAACTAGCCTTCCTTCTACGCTGATGTCTTCTTTTTATTTCTTTT  945

seq1  TTCTTTTTTTTTGGTGGTGACCCAATGTGTTTCATCAGTATTGTTTACAG  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTTTTTGGTGGTGACCCAATGTGTTTCATCAGTATTGTTTACAG  995

seq1  GCACATGGTGAGAGTTTGTTTAAGAACATGGGCATCTTATCATCGCTACG  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGGTGAGAGTTTGTTTAAGAACATGGGCATCTTATCATCGCTACG  1045

seq1  CTAGTGACGAAACACCTCTCCTCCCGTCCCCTCTGTCATTAACCCCGGTT  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGACGAAACACCTCTCCTCCCGTCCCCTCTGTCATTAACCCCGGTT  1095

seq1  TAAATTCTAAAGAAGGAGTGGGGTCCCATGAGTTCATCCCCCTCCTGGGA  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCTAAAGAAGGAGTGGGGTCCCATGAGTTCATCCCCCTCCTGGGA  1145

seq1  AAGGATGGGCTCTAACTTGTGCAGATCAGGTAACCACAGACGCTGTGAAT  1184
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGGGCTCTAACTTGTGCAGATCAGGTAACCACAGACGCTGTGAAT  1195

seq1  TC  1186
      ||
seq2  TC  1197