BAC Information

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BAC

Clone NameB6Ng01-097H02
Chromosome1 (Build37)
Map Location 74,399,360 - 74,539,943
singlet/doubletdoublet
Overlap genePnkd, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37
Upstream genePinc, LOC672208, LOC100043291, Tns1, Rufy4, Il8rb, Il8ra, Arpc2, Gpbar1, Aamp, Tmbim1, 2410125D13Rik
Downstream geneRqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097H02.bB6Ng01-097H02.g
ACCDH907819DH907820
length997856
definitionDH907819|Mus musculus domesticus DNA, BAC clone: B6Ng01-097H02, 5' end.DH907820|Mus musculus domesticus DNA, BAC clone: B6Ng01-097H02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,538,961 - 74,539,943)(74,399,360 - 74,400,205)
sequence
gaattcagtgccttctggcttccatagatcgctaatacatgcccatattc
agacacacatgcatccttataattaaacatagaataaatctttttaacca
aagttatatatttgagttaaatttatcaagaaagaggaacttcttttgga
ggaagggagaaaggtaaattgaaacgtatggaggttagcagtatttagac
aagtttattgtaatttgaatattttggatgaaaagataatttttcttttc
tttctttctttctttctttctttctttctttttttttttaaagctaagtc
ataacattaaaaatgtggtactacgacccagtggaataaaacaaagccgc
ctaatgttgactttacaagataacagcttcttgtctattgacaaagtacc
aagtaaggatgcagaggaaatgaggttgttcctagatgccgtccatcaaa
acagacttcatgcaggtaagcaccagccatatggtgagtctaacattaac
agttctaaaggaatgtgatgactaagggctggatatgggactcacttggt
agagtgtttgtctcgcatgtacaaggccctggagtcgatccctaacagct
cagtacatagaaactgagcatggtgggcatgcatgtaatcccaacacgag
cagaggcgagaggatcaaagtttaagatcatcctttagcagcatgagcta
tctgagatgatgtgagctcaggctagtctaagctgtatgagtcaaagaat
atgacaactgtacactagtattcctgatagaaaatccctcagctaagtac
tattggactgagttaagtggcacaatacaagaattagttaaatttattcc
tggaaatgttagaataatgcagcatggaaatgagtctatataatgtccca
ctttaacagaaggaaggactagacttattatcttcttaaaaatgacaaat
ttaattatttcttggacaataaaactctattaataggatatggggta
gaattcctgcctgcctgctgtctcacttaacctctcttgctctatcttca
ccccctttcctctctgagtcattaaaggctgactttcttccagcctggta
ctcatccggctctttgcagtttgccaaaaaccttcattcccacgtcattt
cccactggatcccagggccctcttgttgtcagtgtgcagatagcagaggt
ctgggaataggaagctccagtgagtggcagcttccaggacctcaggcctg
gccataccccactgctcatccccctccagatctgcttgtcctctggtctc
aggtcaagggccctttgtggccacaggagcactatggtcgttttgcaagc
acaccttaggtgagttagccaggagccacatctttctgtgtcagagcctt
ccactgggctgtgcagtgccctctgttgttcctctgagatgcccctgcct
cagtttcccctctcatttggcttcggctgccctctccaggcacagccttt
ggaactcactctagcaataccaccggactagttagccttcccggccccaa
gacactcgcagtttcatgcctttgtgccttttcgctcatgcggtttcttc
agctggaatgccttcccgctcctgccgcctcctctgcctggtaaacacct
gtttagcctctcccaggcccctcccccaggaaggcacccttcacccctct
cttccaggctacctctgcacctgtaaatgctttctctcgtggcacctatc
acaccgtacttttacttgtttacatggtttgtctcccctttctagactgt
gaatctcttaaggcatgggactgttatctaatgcatctcctgtatttcct
gcgcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_74538961_74539943
seq2: B6Ng01-097H02.b_34_1017 (reverse)

seq1  TTAATAGAGTATTTATTGTCAAAG-AATATTAAATTTTGTCATTTTTTAA  49
      |||||||||| ||||||||| ||| |||| | || ||||||| |||||||
seq2  TTAATAGAGT-TTTATTGTCCAAGAAATAATTAAATTTGTCA-TTTTTAA  48

seq1  GATGATTATATGTTCTTGTCCTTCCTTCTGTTAATGTGGTACATTATATA  99
      || ||| ||| | ||| ||||||||||||||||| |||| ||||||||||
seq2  GAAGATAATAAG-TCTAGTCCTTCCTTCTGTTAAAGTGGGACATTATATA  97

seq1  GACTCATTTCCATGCTGCACTATTCTAACA-TTCCAGGAATAAATTTAAC  148
      ||||||||||||||||||| |||||||||| |||||||||||||||||||
seq2  GACTCATTTCCATGCTGCATTATTCTAACATTTCCAGGAATAAATTTAAC  147

seq1  TAATTCTTGTATTGTGCCACTTAACTCAGTCCAATAGTACTTAGCTGAGG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTTGTATTGTGCCACTTAACTCAGTCCAATAGTACTTAGCTGAGG  197

seq1  ATTTTTCTATCAGGAATACTAGTGTACAGTTGTCATATTCTTTGACTCAT  248
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCTATCAGGAATACTAGTGTACAGTTGTCATATTCTTTGACTCAT  247

seq1  ACAGCTTAGGCTAGCCTGAGCTCACATCATCTCAGATAGCTCATGCTGCT  298
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTAGACTAGCCTGAGCTCACATCATCTCAGATAGCTCATGCTGCT  297

seq1  -AAGGATGATCTTAAACTTTGATCCTCTCGCCTCTGCTCGTGTTGGGATT  347
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATGATCTTAAACTTTGATCCTCTCGCCTCTGCTCGTGTTGGGATT  347

seq1  ACATGCATGCCCACCATGCTCAGTTTCTATGTACTGAGCTGTTAGGGATC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCATGCCCACCATGCTCAGTTTCTATGTACTGAGCTGTTAGGGATC  397

seq1  GACTCCAGGGCCTTGTACATGCGAGACAAACACTCTACCAAGTGAGTCCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCAGGGCCTTGTACATGCGAGACAAACACTCTACCAAGTGAGTCCC  447

seq1  ATATCCAGCCCTTAGTCATCACATTCCTTTAGAACTGTTAATGTTAGACT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCAGCCCTTAGTCATCACATTCCTTTAGAACTGTTAATGTTAGACT  497

seq1  CACCATATGGCTGGTGCTTACCTGCATGAAGTCTGTTTTGATGGACGGCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATATGGCTGGTGCTTACCTGCATGAAGTCTGTTTTGATGGACGGCA  547

seq1  TCTAGGAACAACCTCATTTCCTCTGCATCCTTACTTGGTACTTTGTCAAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGAACAACCTCATTTCCTCTGCATCCTTACTTGGTACTTTGTCAAT  597

seq1  AGACAAGAAGCTGTTATCTTGTAAAGTCAACATTAGGCGGCTTTGTTTTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGAAGCTGTTATCTTGTAAAGTCAACATTAGGCGGCTTTGTTTTA  647

seq1  TTCCACTGGGTCGTAGTACCACATTTTTAATGTTATGACTTAGCTTTAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTGGGTCGTAGTACCACATTTTTAATGTTATGACTTAGCTTTAAA  697

seq1  AAAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAGAAAAATTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAGAAAAATTA  747

seq1  TCTTTTCATCCAAAATATTCAAATTACAATAAACTTGTCTAAATACTGCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCATCCAAAATATTCAAATTACAATAAACTTGTCTAAATACTGCT  797

seq1  AACCTCCATACGTTTCAATTTACCTTTCTCCCTTCCTCCAAAAGAAGTTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCCATACGTTTCAATTTACCTTTCTCCCTTCCTCCAAAAGAAGTTC  847

seq1  CTCTTTCTTGATAAATTTAACTCAAATATATAACTTTGGTTAAAAAGATT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTTGATAAATTTAACTCAAATATATAACTTTGGTTAAAAAGATT  897

seq1  TATTCTATGTTTAATTATAAGGATGCATGTGTGTCTGAATATGGGCATGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTATGTTTAATTATAAGGATGCATGTGTGTCTGAATATGGGCATGT  947

seq1  ATTAGC-ATCTATGGAAGCCAGAAGGCACTGAATTCC  983
      |||||| ||||||||||||||||||||||||||||||
seq2  ATTAGCGATCTATGGAAGCCAGAAGGCACTGAATTCC  984

seq1: chr1_74399360_74400205
seq2: B6Ng01-097H02.g_71_926

seq1  GAATTCCTGCCTGCCTGCTGTCTCACTTAACCTCTCTTGCTCTATCTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCCTGCCTGCTGTCTCACTTAACCTCTCTTGCTCTATCTTCA  50

seq1  CCCCCTTTCCTCTCTGAGTCATTAAAGGCTGACTTTCTTCCAGCCTGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTTTCCTCTCTGAGTCATTAAAGGCTGACTTTCTTCCAGCCTGGTA  100

seq1  CTCATCCGGCTCTTTGCAGTTTGCCAAAAACCTTCATTCCCACGTCATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCCGGCTCTTTGCAGTTTGCCAAAAACCTTCATTCCCACGTCATTT  150

seq1  CCCACTGGATCCCAGGGCCCTCTTGTTGTCAGTGTGCAGATAGCAGAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGGATCCCAGGGCCCTCTTGTTGTCAGTGTGCAGATAGCAGAGGT  200

seq1  CTGGGAATAGGAAGCTCCAGTGAGTGGCAGCTTCCAGGACCTCAGGCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAATAGGAAGCTCCAGTGAGTGGCAGCTTCCAGGACCTCAGGCCTG  250

seq1  GCCATACCCCACTGCTCATCCCCCTCCAGATCTGCTTGTCCTCTGGTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATACCCCACTGCTCATCCCCCTCCAGATCTGCTTGTCCTCTGGTCTC  300

seq1  AGGTCAAGGGCCCTTTGTGGCCACAGGAGCACTATGGTCGTTTTGCAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAAGGGCCCTTTGTGGCCACAGGAGCACTATGGTCGTTTTGCAAGC  350

seq1  ACACCTTAGGTGAGTTAGCCAGGAGCCACATCTTTCTGTGTCAGAGCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTAGGTGAGTTAGCCAGGAGCCACATCTTTCTGTGTCAGAGCCTT  400

seq1  CCACTGGGCTGTGCAGTGCCCTCTGTTGTTCCTCTGAGATGCCCCTGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGGGCTGTGCAGTGCCCTCTGTTGTTCCTCTGAGATGCCCCTGCCT  450

seq1  CAGTTTCCCCTCTCATTTGGCTTCGGCTGCCCTCTCCAGGCACAGCCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCCCCTCTCATTTGGCTTCGGCTGCCCTCTCCAGGCACAGCCTTT  500

seq1  GGAACTCACTCTAGCAATACCACCGGACTAGTTAGCCTTCCCGGCCCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCACTCTAGCAATACCACCGGACTAGTTAGCCTTCCCGGCCCCAA  550

seq1  GACACTCGCAGTTTCATGCCTTTGTGCC-TTTCGCTCATGCGGTTTCTTC  599
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GACACTCGCAGTTTCATGCCTTTGTGCCTTTTCGCTCATGCGGTTTCTTC  600

seq1  AGCTGGAATGCCTTCCCGCTCCTGCCGCCTCCTCTGCCTGGCAAACACCT  649
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGCTGGAATGCCTTCCCGCTCCTGCCGCCTCCTCTGCCTGGTAAACACCT  650

seq1  G-TTAGCCTCTCCCAGGCCCCTCCCCCAGGAAGGCACCCTTCACCCCTCT  698
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGCCTCTCCCAGGCCCCTCCCCCAGGAAGGCACCCTTCACCCCTCT  700

seq1  CTTCCAGGCTACCTCTGCACCTGTAAATGC-TTCTCTCGTGGCACCTATC  747
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTTCCAGGCTACCTCTGCACCTGTAAATGCTTTCTCTCGTGGCACCTATC  750

seq1  ACACCGTAC-TTTACTTGTTTACAT-GTTTGTCTCCCC-TTCTAGACTGT  794
      ||||||||| ||||||||||||||| |||||||||||| |||||||||||
seq2  ACACCGTACTTTTACTTGTTTACATGGTTTGTCTCCCCTTTCTAGACTGT  800

seq1  GAATC-CTTAAGGGCAT-GGACTG-TATCTTATGCATCT-CTGTATTT-C  839
      ||||| ||||| ||||| |||||| ||||| |||||||| |||||||| |
seq2  GAATCTCTTAA-GGCATGGGACTGTTATCTAATGCATCTCCTGTATTTCC  849

seq1  TGCGCCT  846
      |||||||
seq2  TGCGCCT  856