BAC Information

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BAC

Clone NameB6Ng01-097I13
Chromosome1 (Build37)
Map Location 99,942,757 - 100,055,862
singlet/doubletdoublet
Overlap genenone
Upstream geneSlco6c1, EG634331, EG634346, D1Ertd622e, Hisppd1, Zh2c2, Pam, LOC100041823
Downstream geneLOC666153, LOC100040887, Slco6d1, LOC100041868, EG666182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097I13.bB6Ng01-097I13.g
ACCDH907887DH907888
length1,1091,123
definitionDH907887|Mus musculus domesticus DNA, BAC clone: B6Ng01-097I13, 5' end.DH907888|Mus musculus domesticus DNA, BAC clone: B6Ng01-097I13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,942,757 - 99,943,878)(100,054,722 - 100,055,862)
sequence
gaattcagttagctaatgaattaggttgtattgctgcaaacatgagcaga
aaaaaataagataaaatttagcatgaagcgtattagttttatttctaaca
caagcattatgagtgtatttcaataagagattttacaagtatggtatcag
tttaggttgagtcaatttcttcaacatttactctactgtaatgtagatga
atttgcttctacttatgagaatcagtttctaatagcaattaatgaataac
ttattaaacacaagggcaagtataatttaacactgttttaatatagtttc
aagactgggaaaattcaaagaataaacacttatgatacatatgacacatc
cttcagttccaaggagctgaatgtaacttttagtatggctttatactctt
acaaccattatttcttacttactctttatagaaacctacatctagcatta
atgttccattaacataatttcccagaaacaaattatatagaccatattcc
acggtattctaaaaatacaagactctagaaataaacagtctaaaccactt
cttgtccctgtcaactaagccatgcgcctgacttctatacagaacaaagg
ttcagcttcctgaaggatgggtagtctctgtacgagccattctcaagccc
ctgtcctctcgcgaagctatttactaacagttagaaatcacccttttcta
ctctccttaaagctcactaccagatgtactgaaattgtttactggggatc
cagggaaggaaccacaggcagaatgcgtggtgtggtgatggagaagagag
gtctatggatttcttgatgagacagtttgggggagaaaagctgaaacaga
aaactaacttccagaagggactcttcactcatagctctcccctgacacca
taagagactgcacagtcctctttgcagagatgtgaagacaaatgctcagc
ctcaggatggaggcatacgtaagtttttcatcaagcaccaagttcactcc
tctgcatatagaaaatatggagtaggattgagtatgcattatgactgtca
gtagaccctgacttccgacaatccctcccatatcctgtatatcacttaga
tggataaaa
gaattccacctggagttcacagcaataatattttgccatggcatcagtgg
aaataaggaagtaataaagcagagaagcagaagaaagagtgctttaaagg
cagaatctgtagacctgtcaatcactggctgtgagaaccagagaggaagt
aggaaagatacagcaccctaacagatgtcaggagtattagtgacaccatt
aacaaaaccaggtgtcaccaaacagggacagtgttcgcatttatgtgtgc
tttgagtgtgttactcaaagagcaggaagcataggttggaattactacat
ggagcagttgaaaattttttgcctggtatgagtgttaagtatatattttg
tagcatatttataatttttaaaatgttatttatggtttctggtcactaat
tctaaattagactcatacatgatgaaagcttacaaaacaaccaagtctgt
caacatttccctaactggatcttttttttttttttttgatatgtcctttt
tatacatttcgaatgctatcccgaaagttccctataccctcgccccaccc
tgttcccctactcactcactctcacttcttggccctggatttcccctgta
ctggggtatataaagtttgtaataccaaggggcctctctttccagtgatg
gccgactaggtcatctgctatatatgcagctagagacacgagctctgggg
ctactggttagttcatagtgctccacctatagggctgcagaccccttcag
ctcctcgggtgttttctctatagcttctccattggggggccctgtgtttc
atcttatagatgactgtgagcatccacttctgtatttgccaggcactggc
atcttgcaatcttcacatcaatgcctgctgggttttgtttgctgtgttgc
tgtagatggatgctggtcttgtattttgtgtgtcatttttatggaataaa
tcaaggtttttaaagaacaagtctgcatttctaacaagttatttcaattt
tttttcactttctagaactggatatagcttgccttttctctaaggacatt
ggacagggaaatatttagtggagtagtcctataatctggacaagttgtca
tgtggttaaaaatgcagtttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_99942757_99943878
seq2: B6Ng01-097I13.b_48_1156

seq1  GAATTCAGTTAGCTAATGAATTAGGTTGTATTGCTGCAAACATGAGCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTAGCTAATGAATTAGGTTGTATTGCTGCAAACATGAGCAGA  50

seq1  AAAAAATAAGATAAAATTTAGCATGAAGCGTATTAGTTTTATTTCTAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAAGATAAAATTTAGCATGAAGCGTATTAGTTTTATTTCTAACA  100

seq1  CAAGCATTATGAGTGTATTTCAATAAGAGATTTTACAAGTATGGTATCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATTATGAGTGTATTTCAATAAGAGATTTTACAAGTATGGTATCAG  150

seq1  TTTAGGTTGAGTCAATTTCTTCAACATTTACTCTACTGTAATGTAGATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGTTGAGTCAATTTCTTCAACATTTACTCTACTGTAATGTAGATGA  200

seq1  ATTTGCTTCTACTTATGAGAATCAGTTTCTAATAGCAATTAATGAATAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTTCTACTTATGAGAATCAGTTTCTAATAGCAATTAATGAATAAC  250

seq1  TTATTAAACACAAGGGCAAGTATAATTTAACACTGTTTTAATATAGTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAAACACAAGGGCAAGTATAATTTAACACTGTTTTAATATAGTTTC  300

seq1  AAGACTGGGAAAATTCAAAGAATAAACACTTATGATACATATGACACATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGGGAAAATTCAAAGAATAAACACTTATGATACATATGACACATC  350

seq1  CTTCAGTTCCAAGGAGCTGAATGTAACTTTTAGTATGGCTTTATACTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTTCCAAGGAGCTGAATGTAACTTTTAGTATGGCTTTATACTCTT  400

seq1  ACAACCATTATTTCTTACTTACTCTTTATAGAAACCTACATCTAGCATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCATTATTTCTTACTTACTCTTTATAGAAACCTACATCTAGCATTA  450

seq1  ATGTTCCATTAACATAATTTCCCAGAAACAAATTATATAGACCATATTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCCATTAACATAATTTCCCAGAAACAAATTATATAGACCATATTCC  500

seq1  ACGGTATTCTAAAAATACAAGACTCTAGAAATAAACAGTCTAAACCACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTATTCTAAAAATACAAGACTCTAGAAATAAACAGTCTAAACCACTT  550

seq1  CTTGTCCCTGTCAACTAAGCCATGCGCCTGACTTCTATACAGAACAAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCCCTGTCAACTAAGCCATGCGCCTGACTTCTATACAGAACAAAGG  600

seq1  TTCAGCTTCCTGAAGGATGGGTAGTCTCTGTACGAGCCATTCTCAAGCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTTCCTGAAGGATGGGTAGTCTCTGTACGAGCCATTCTCAAGCCC  650

seq1  CTGTCCTCTCGCGAAGCTATTTACTAACAGTTAGAAATCACCCTTTTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTCTCGCGAAGCTATTTACTAACAGTTAGAAATCACCCTTTTCTA  700

seq1  CTCTCCTTAAAGCTCACTACCAGATGTACTGAAATTGTTTACTGGGGATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTTAAAGCTCACTACCAGATGTACTGAAATTGTTTACTGGGGATC  750

seq1  CAGGGAAGGAACCACAGGCAGAATGCGTGGTGTGGTGATGGAGAAGAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAGGAACCACAGGCAGAATGCGTGGTGTGGTGATGGAGAAGAGAG  800

seq1  GTCTATGGATTTCTTGATGAGACAGTTTGGGGGAGAAAAGCTGAAACAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATGGATTTCTTGATGAGACAGTTTGGGGGAGAAAAGCTGAAACAGA  850

seq1  AAACTAACTTCCAGAAGGGACTCTTCACTCATAGCTCTCCCCCTGACACC  900
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAACTAACTTCCAGAAGGGACTCTTCACTCATAGCTCT-CCCCTGACACC  899

seq1  ATAAGAGACTGCACAGTCCTCTTTGCAGAGATGTGAAGACAAATGCTCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAGACTGCACAGTCCTCTTTGCAGAGATGTGAAGACAAATGCTCAG  949

seq1  CCTCAGGAAGGGAGGCATACGTAAGTATTTCATCAAGCACCAAGTTCACT  1000
      ||||||| | |||||||||||||||| |||||||||||||||||||||||
seq2  CCTCAGG-ATGGAGGCATACGTAAGTTTTTCATCAAGCACCAAGTTCACT  998

seq1  CCTCTGCAATATTAGAAACATATGGAAGTAGGATTGAAGTATGCAATTAT  1050
      ||||||| ||| |||||| |||||| |||||||||| ||||||| |||||
seq2  CCTCTGC-ATA-TAGAAA-ATATGG-AGTAGGATTG-AGTATGC-ATTAT  1042

seq1  GACTGTCAGTAGACACTGAACTTCCGACAATACCTTCCCATATCCTGTTA  1100
      |||||||||||||| ||| |||||||||||| || |||||||||||||  
seq2  GACTGTCAGTAGACCCTG-ACTTCCGACAAT-CCCTCCCATATCCTGT--  1088

seq1  TTATCACTTAAGATGGATAAAA  1122
       |||||||| ||||||||||||
seq2  ATATCACTT-AGATGGATAAAA  1109

seq1: chr1_100054722_100055862
seq2: B6Ng01-097I13.g_68_1190 (reverse)

seq1  AAGAAACTGCAGTGTTTTTTAAACCACACTGGACAACTTGTGTCAGATAA  50
      |||||||||||     |||| |||||||   ||||||||||  ||||| |
seq2  AAGAAACTGCA-----TTTTTAACCACA--TGACAACTTGT-CCAGATTA  42

seq1  TAAGGACATACT-CACTAAATATTTACCTGTCCAATGTCCTTAGAGAAAA  99
      | ||||| |||| |||||||||||| ||||||||||||||||||||||||
seq2  T-AGGAC-TACTCCACTAAATATTTCCCTGTCCAATGTCCTTAGAGAAAA  90

seq1  GCCAAGCTATGATTCAGTTTCCTAGAAA-TGAAAAAAAAATGAAATAAAC  148
      | |||||||| || |||||  ||||||| |||||||||| |||||| |||
seq2  GGCAAGCTAT-ATCCAGTT--CTAGAAAGTGAAAAAAAATTGAAAT-AAC  136

seq1  TTTGTAGAAATTGCAGAACTTGTTCTTTAAAATCTTTGATTTATT-CATA  197
      ||  |||||| ||||| ||||||||||||||| | |||||||||| ||||
seq2  TTGTTAGAAA-TGCAG-ACTTGTTCTTTAAAAACCTTGATTTATTCCATA  184

seq1  TAAAATGACCACAACAAAATACAAAGACCAGCATCCATCTACAGCAACAA  247
       ||||||| ||| ||||||||| ||||||||||||||||||||||||| |
seq2  -AAAATGA-CAC-ACAAAATAC-AAGACCAGCATCCATCTACAGCAAC-A  229

seq1  CAGCAAACAAAACCCAGCAGGCATTGATGTGAAGATTGCAAGATGCCAGT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAACAAAACCCAGCAGGCATTGATGTGAAGATTGCAAGATGCCAGT  279

seq1  GCCTGGCAAATACAGAAGTGGATGCTCACAGTCATCTATAAGATGAAACA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGCAAATACAGAAGTGGATGCTCACAGTCATCTATAAGATGAAACA  329

seq1  CAGGGCCCCCCAATGGAGAAGCTATAGAGAAAACACCCGAGGAGCTGAAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCCCCCAATGGAGAAGCTATAGAGAAAACACCCGAGGAGCTGAAG  379

seq1  GGGTCTGCAGCCCTATAGGTGGAGCACTATGAACTAACCAGTAGCCCCAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTGCAGCCCTATAGGTGGAGCACTATGAACTAACCAGTAGCCCCAG  429

seq1  AGCTCGTGTCTCTAGCTGCATATATAGCAGATGACCTAGTCGGCCATCAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCGTGTCTCTAGCTGCATATATAGCAGATGACCTAGTCGGCCATCAC  479

seq1  TGGAAAGAGAGGCCCCTTGGTATTACAAACTTTATATACCCCAGTACAGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGAGAGGCCCCTTGGTATTACAAACTTTATATACCCCAGTACAGG  529

seq1  GGAAATCCAGGGCCAAGAAGTGAGAGTGAGTGAGTAGGGGAACAGGGTGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATCCAGGGCCAAGAAGTGAGAGTGAGTGAGTAGGGGAACAGGGTGG  579

seq1  GGCGAGGGTATAGGGAACTTTCGGGATAGCATTCGAAATGTATAAAAAGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGAGGGTATAGGGAACTTTCGGGATAGCATTCGAAATGTATAAAAAGG  629

seq1  ACATATCAAAAAAAAAAAAAAAAGATCCAGTTAGGGAAATGTTGACAGAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCAAAAAAAAAAAAAAAAGATCCAGTTAGGGAAATGTTGACAGAC  679

seq1  TTGGTTGTTTTGTAAGCTTTCATCATGTATGAGTCTAATTTAGAATTAGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTGTTTTGTAAGCTTTCATCATGTATGAGTCTAATTTAGAATTAGT  729

seq1  GACCAGAAACCATAAATAACATTTTAAAAATTATAAATATGCTACAAAAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGAAACCATAAATAACATTTTAAAAATTATAAATATGCTACAAAAT  779

seq1  ATATACTTAACACTCATACCAGGCAAAAAATTTTCAACTGCTCCATGTAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTTAACACTCATACCAGGCAAAAAATTTTCAACTGCTCCATGTAG  829

seq1  TAATTCCAACCTATGCTTCCTGCTCTTTGAGTAACACACTCAAAGCACAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCAACCTATGCTTCCTGCTCTTTGAGTAACACACTCAAAGCACAC  879

seq1  ATAAATGCGAACACTGTCCCTGTTTGGTGACACCTGGTTTTGTTAATGGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGCGAACACTGTCCCTGTTTGGTGACACCTGGTTTTGTTAATGGT  929

seq1  GTCACTAATACTCCTGACATCTGTTAGGGTGCTGTATCTTTCCTACTTCC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTAATACTCCTGACATCTGTTAGGGTGCTGTATCTTTCCTACTTCC  979

seq1  TCTCTGGTTCTCACAGCCAGTGATTGACAGGTCTACAGATTCTGCCTTTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGTTCTCACAGCCAGTGATTGACAGGTCTACAGATTCTGCCTTTA  1029

seq1  AAGCACTCTTTCTTCTGCTTCTCTGCTTTATTACTTCCTTATTTCCACTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTCTTTCTTCTGCTTCTCTGCTTTATTACTTCCTTATTTCCACTG  1079

seq1  ATGCCATGGCAAAATATTATTGCTGTGAACTCCAGGTGGAATTC  1141
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATGGCAAAATATTATTGCTGTGAACTCCAGGTGGAATTC  1123