BAC Information

Click to search

BAC

Clone NameB6Ng01-097I23
Chromosome1 (Build37)
Map Location 161,456,404 - 161,572,988
singlet/doubletdoublet
Overlap geneTnr
Upstream geneAstn1, Pappa2, 4930562F17Rik, EG240853, LOC664972, Rfwd2, EG620484
Downstream gene4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp, Rabgap1l, Gpr52
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097I23.bB6Ng01-097I23.g
ACCDH907903DH907904
length9861,130
definitionDH907903|Mus musculus domesticus DNA, BAC clone: B6Ng01-097I23, 5' end.DH907904|Mus musculus domesticus DNA, BAC clone: B6Ng01-097I23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(161,456,404 - 161,457,388)(161,571,872 - 161,572,988)
sequence
gaattcactgtgaaacagtgggctctccctggggaagaatcagaaccaac
cagacaacttgccatgtcgctgatgcccagaaaccaagtgaagagctctc
tgtgctgatggtgacaagagtccctgggatgccagcctccaggatgaact
gaagtcacatgcccagtgttcacattccctttacctcagaatgccaggca
gaggcccttttcctagagcaccttgccataggtgtacgagtttggatgtt
tgttcactttgctgacacaggacccttcatggggccaccttcattgagtc
ctctgtggtttgggatgtaggaggattaccaagggtcaggaaacagttgg
acttctatcacctagaggagtgagaaatggtacaaactaactagacacat
aaaggctccactttcccagaagcctcttctctcacacccgccagggttct
ggagagaaggctactgcatactcacgtctgtcttcccctcactgaacaaa
agaaattctgctaggctgcttctgagacagagaaatgagacattctagga
aaagatggagggaaggatgaagccagcatcctgctttattctctgtaaat
cactctaagtgaccaccatttacctcacatgggtaaccgttcccttttgt
aatagggatataattctcatttaacaacatggacagaaggtaactacttg
gattagagagttttgacaactgtgtcaaaatgaatatttgacctttaccc
caaataaaatatacaaaagttcctgcatgcttctctccaattgacctttt
ttttcttccacaatccctttgcttgttcaaagctaccatcatagctcaaa
cggctgcactgtgcaatataaataatgctgattgcatttcatgggtagat
gtgttatgtggaccttggactttcatgtggacatctcagttctatgttta
ctgattctagatgggtgggaggaaaggttatggagg
gaattcagcagaggaatggccccaggactttggcccagagcaccatgcat
ggcattgggctattttacttttcatttctgctttaagagaccagaaaagt
cagacaactaatccaactgaggtattggataagttgaagttgagcaggtt
tcttgtttcactagatgggggctgaattatggaagaacaagtatcttcag
agatatttttggtgcagaaaagaaagtgaactaaaagtcacagaagcata
agccttagaacttggtttttgggacatcatctgatccgaactcaccatct
tatatatgaggaaatagagcccaagggtgttacagaatctgcttccaact
tcaacactagtgagggctgagccagaagtatctatgttgtgatactgtgt
gaattggtgtaatcaaacccacttcttgttcttcctctggaaaacaaatg
taataagagagatcaccactaagaacagtgcacacagagagattgtgtgt
tggaatggaaacattggcttcagaataagaaaacattcactccaactcct
ttccaccctaagtgaccagggctcttgtataaggaactgaatcttaacct
atctagataatgggaataataaaagccccttcacttattacatggaaaga
gagcacaaagcagggaaagaatgttctgtgtactgtgcatatgtgcagtc
tgagttggagtcctgtctgcgatgaactccatttagcactatgggcaaag
gaactgagaaggactttagaggctcggagataaattgtggaatagaatat
ctccctctgggttttgtaatacagtgataaagcagtgtagagaaaggatc
tacacagctcagagatgtgagtgtgcatgtctagcttagagtgtggatga
acacaggacacagacaggtcccttggttcatctctctgcatctgttctta
ctccagcctgcaattctgctgccagatcatcttcctgataaaaacatctt
aatttctcccccattggtaataatttccaaaccacttagcttggattccc
cattattcatcattaaaacctctatctaaatctttcctactcccccgcaa
tggtggtccccggcccaacctcggctttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_161456404_161457388
seq2: B6Ng01-097I23.b_49_1034

seq1  GAATTCACTGTGAAACAGTGGGCTCTCCCTGGGGAAGAATCAGAACCAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTGAAACAGTGGGCTCTCCCTGGGGAAGAATCAGAACCAAC  50

seq1  CAGACAACTTGCCATGTCGCTGATGCCCAGAAACCAAGTGAAGAGCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAACTTGCCATGTCGCTGATGCCCAGAAACCAAGTGAAGAGCTCTC  100

seq1  TGTGCTGATGGTGACAAGAGTCCCTGGGATGCCAGCCTCCAGGATGAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGATGGTGACAAGAGTCCCTGGGATGCCAGCCTCCAGGATGAACT  150

seq1  GAAGTCACATGCCCAGTGTTCACATTCCCTTTACCTCAGAATGCCAGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCACATGCCCAGTGTTCACATTCCCTTTACCTCAGAATGCCAGGCA  200

seq1  GAGGCCCTTTTCCTAGAGCACCTTGCCATAGGTGTACGAGTTTGGATGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCCTTTTCCTAGAGCACCTTGCCATAGGTGTACGAGTTTGGATGTT  250

seq1  TGTTCACTTTGCTGACACAGGACCCTTCATGGGGCCACCTTCATTGAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACTTTGCTGACACAGGACCCTTCATGGGGCCACCTTCATTGAGTC  300

seq1  CTCTGTGGTTTGGGATGTAGGAGGATTACCAAGGGTCAGGAAACAGTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGGTTTGGGATGTAGGAGGATTACCAAGGGTCAGGAAACAGTTGG  350

seq1  ACTTCTATCACCTAGAGGAGTGAGAAATGGTACAAACTAACTAGACACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTATCACCTAGAGGAGTGAGAAATGGTACAAACTAACTAGACACAT  400

seq1  AAAGGCTCCACTTTCCCAGAAGCCTCTTCTCTCACACCCGCCAGGGTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTCCACTTTCCCAGAAGCCTCTTCTCTCACACCCGCCAGGGTTCT  450

seq1  GGAGAGAAGGCTACTGCATACTCACGTCTGTCTTCCCCTCACTGAACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAAGGCTACTGCATACTCACGTCTGTCTTCCCCTCACTGAACAAA  500

seq1  AGAAATTCTGCTAGGCTGCTTCTGAGACAGAGAAATGAGACATTCTAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTCTGCTAGGCTGCTTCTGAGACAGAGAAATGAGACATTCTAGGA  550

seq1  AAAGATGGAGGGAAGGATGAAGCCAGCATCCTGCTTTATTCTCTGTAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGGAGGGAAGGATGAAGCCAGCATCCTGCTTTATTCTCTGTAAAT  600

seq1  CACTCTAAGTGACCACCATTTACCTCACATGGGTAACCGTTCCCTTTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTAAGTGACCACCATTTACCTCACATGGGTAACCGTTCCCTTTTGT  650

seq1  AATAGGGATATAATTCTCATTTAACAACATGGACAGAAGGTAACTACTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGGATATAATTCTCATTTAACAACATGGACAGAAGGTAACTACTTG  700

seq1  GATTAGAGAGTTTTGACAACTGTGTCAAAATGAATATTTGACCTTTACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGAGAGTTTTGACAACTGTGTCAAAATGAATATTTGACCTTTACCC  750

seq1  CAAATAAAATATACAAAAGTTCCTGCATGCTTCTCTCCAATTGACC-TTT  799
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CAAATAAAATATACAAAAGTTCCTGCATGCTTCTCTCCAATTGACCTTTT  800

seq1  TTTTCTTCCACAATCCCTTTGCTTGTTCAAAGCTACCATCATAGCTCAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCCACAATCCCTTTGCTTGTTCAAAGCTACCATCATAGCTCAAA  850

seq1  CGGCTGCACTGTGCAATATAAATAATGCTGATTGCATTTCAT-GGTAGAT  898
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CGGCTGCACTGTGCAATATAAATAATGCTGATTGCATTTCATGGGTAGAT  900

seq1  GTGTTATGTGGACCTTGGACTTTCATGTGGACATCTCAGGTTCTATGTTT  948
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GTGTTATGTGGACCTTGGACTTTCATGTGGACATCTCA-GTTCTATGTTT  949

seq1  ACTGATTCTAGATGGGTGGGAGGAAAGGTTAGGGAGG  985
      ||||||||||||||||||||||||||||||| |||||
seq2  ACTGATTCTAGATGGGTGGGAGGAAAGGTTATGGAGG  986

seq1: chr1_161571872_161572988
seq2: B6Ng01-097I23.g_68_1197 (reverse)

seq1  GCAAAGCCGAGTTTGG--CAGGGACCACAATTGCGGGGAAGTAGGAAAG-  47
      ||||||||||| ||||  | |||||||| ||||||||| |||||||||| 
seq2  GCAAAGCCGAGGTTGGGCCGGGGACCACCATTGCGGGGGAGTAGGAAAGA  50

seq1  TTTAGAT-GA-GTTTTAATGATG-ATAAATGGGAATTCAAGCTAAGT-GT  93
      ||||||| || |||||||||||| ||||  |||||| |||||||||| ||
seq2  TTTAGATAGAGGTTTTAATGATGAATAATGGGGAATCCAAGCTAAGTGGT  100

seq1  TTGG-AATTAATACCAAT-GGGGAGAAATTAGAATGTTTTAATCAGGAAG  141
      |||| ||||| ||||||| ||||||||||||  ||||||| |||||||||
seq2  TTGGAAATTATTACCAATGGGGGAGAAATTAAGATGTTTTTATCAGGAAG  150

seq1  ATGAATCTGGCAGCAGAA-TGCAGGCTGGAGTGAAGACAGATGCAGAGAG  190
      ||| |||||||||||||| ||||||||||||| |  ||||||||||||||
seq2  ATG-ATCTGGCAGCAGAATTGCAGGCTGGAGTAAGAACAGATGCAGAGAG  199

seq1  ATGAA-CAAGGGACCTGTCTGTGTCCTGTGTTCATCCACACTCTAAGCTA  239
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACCAAGGGACCTGTCTGTGTCCTGTGTTCATCCACACTCTAAGCTA  249

seq1  GACATGCACACTCACATCTCTGAGCTGTGTAGATCCTTTCTCTACACTGC  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGCACACTCACATCTCTGAGCTGTGTAGATCCTTTCTCTACACTGC  299

seq1  -TTATCACTGTATTACAAA--CCAGAGGGAGATATTCTATTCCACAATTT  336
       ||||||||||||||||||  |||||||||||||||||||||||||||||
seq2  TTTATCACTGTATTACAAAACCCAGAGGGAGATATTCTATTCCACAATTT  349

seq1  ATCTCCGAGCCTCTAAAGTCCTTCTCAGTTCCTTTGCCCATAGTGCTAAA  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCGAGCCTCTAAAGTCCTTCTCAGTTCCTTTGCCCATAGTGCTAAA  399

seq1  TGGAGTTCATCGCAGACAGGACTCCAACTCAGACTGCACATATGCACAGT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTTCATCGCAGACAGGACTCCAACTCAGACTGCACATATGCACAGT  449

seq1  ACACAGAACATTCTTTCCCTGCTTTGTGCTCTCTTTCCATGTAATAAGTG  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAACATTCTTTCCCTGCTTTGTGCTCTCTTTCCATGTAATAAGTG  499

seq1  AAGGGGCTTTTATTATTCCCATTATCTAGATAGGTTAAGATTCAGTTCCT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGCTTTTATTATTCCCATTATCTAGATAGGTTAAGATTCAGTTCCT  549

seq1  TATACAAGAGCCCTGGTCACTTAGGGTGGAAAGGAGTTGGAGTGAATGTT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAAGAGCCCTGGTCACTTAGGGTGGAAAGGAGTTGGAGTGAATGTT  599

seq1  TTCTTATTCTGAAGCCAATGTTTCCATTCCAACACACAATCTCTCTGTGT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATTCTGAAGCCAATGTTTCCATTCCAACACACAATCTCTCTGTGT  649

seq1  GCACTGTTCTTAGTGGTGATCTCTCTTATTACATTTGTTTTCCAGAGGAA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGTTCTTAGTGGTGATCTCTCTTATTACATTTGTTTTCCAGAGGAA  699

seq1  GAACAAGAAGTGGGTTTGATTACACCAATTCACACAGTATCACAACATAG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGAAGTGGGTTTGATTACACCAATTCACACAGTATCACAACATAG  749

seq1  ATACTTCTGGCTCAGCCCTCACTAGTGTTGAAGTTGGAAGCAGATTCTGT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTCTGGCTCAGCCCTCACTAGTGTTGAAGTTGGAAGCAGATTCTGT  799

seq1  AACACCCTTGGGCTCTATTTCCTCATATATAAGATGGTGAGTTCGGATCA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCCTTGGGCTCTATTTCCTCATATATAAGATGGTGAGTTCGGATCA  849

seq1  GATGATGTCCCAAAAACCAAGTTCTAAGGCTTATGCTTCTGTGACTTTTA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATGTCCCAAAAACCAAGTTCTAAGGCTTATGCTTCTGTGACTTTTA  899

seq1  GTTCACTTTCTTTTCTGCACCAAAAATATCTCTGAAGATACTTGTTCTTC  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACTTTCTTTTCTGCACCAAAAATATCTCTGAAGATACTTGTTCTTC  949

seq1  CATAATTCAGCCCCCATCTAGTGAAACAAGAAACCTGCTCAACTTCAACT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTCAGCCCCCATCTAGTGAAACAAGAAACCTGCTCAACTTCAACT  999

seq1  TATCCAATACCTCAGTTGGATTAGTTGTCTGACTTTTCTGGTCTCTTAAA  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAATACCTCAGTTGGATTAGTTGTCTGACTTTTCTGGTCTCTTAAA  1049

seq1  GCAGAAATGAAAAGTAAAATAGCCCAATGCCATGCATGGTGCTCTGGGCC  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAATGAAAAGTAAAATAGCCCAATGCCATGCATGGTGCTCTGGGCC  1099

seq1  AAAGTCCTGGGGCCATTCCTCTGCTGAATTC  1117
      |||||||||||||||||||||||||||||||
seq2  AAAGTCCTGGGGCCATTCCTCTGCTGAATTC  1130