BAC Information

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BAC

Clone NameB6Ng01-098A01
Chromosome1 (Build37)
Map Location 60,132,324 - 60,273,454
singlet/doubletdoublet
Overlap geneWdr12, Carf, Nbeal1
Upstream geneAls2cr11, Als2cr4, Mpp4, Als2, Als2cr7, Fzd7, Gm973, Sumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2, Als2cr13, LOC100042496, Ica1l
Downstream geneCyp20a1, Abi2, Raph1, LOC100043027, LOC100042533, Eif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098A01.bB6Ng01-098A01.g
ACCDH908221DH908222
length1,1161,126
definitionDH908221|Mus musculus domesticus DNA, BAC clone: B6Ng01-098A01, 5' end.DH908222|Mus musculus domesticus DNA, BAC clone: B6Ng01-098A01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,272,331 - 60,273,454)(60,132,324 - 60,133,477)
sequence
gaattcagggatcattggttccaggagcctcacctcagaatacaaaaagc
catgggtattcaagcccctgagtaaaatgatgcagaatttgcttggagcc
tatactaatcctctcatatatgttaaaccactctagattatggaggctat
ctaaaatgatgtaaaaagtatgtaagtaactgtaacactgcactgtttag
gaggtgaaaacaagaaaaagtctgggcatgtatagatgcaatttctttcc
cactacatgatttcaagctacaggtgtatctgcaaatgtggaactcaaga
gatatagaaagttgactctcctgaacatgcttgtagttttttaatttatt
atggatattaccataatttaacagataatctaccttattcatctttatta
ccaaagcacaaaattaaatcaggatgagcatttctttaaccagtctccct
tgaactctatccccagtttgcattacccagttctctactgacaaactgtt
gttccactccgattctgggagaggtgttaataagttcatgtgcatgtatg
tgatgtcctggaacactggaattacaggcatgtgctacggtgtaggtcct
catgtttgcacagcaagtactttagtgactgagccatatgcccagccctt
gtctgccctttctttttaccatcctgtaataaatgctgtttgcctttact
acattcttacacaacagaatgacaaatatccaacttcatacacaacactg
ccaaacagagctataaaatgttctaacagaaaattgtaattaagaaaatg
aagccattacaactatgttggaataactgtcatacacatgctttcctgtt
ttaaacagtataaaatggacaaaataggtcccagaaatcagtcagaaaac
ggtcatatattgaagaaggcaaacatgttgaactcaaggatcacttcaga
tttgtttttagggattactttcagaattactgcagagatggtacaaagac
cagtttagggaccagaaataaattatagtaaagcaattgaaatctgcaaa
atggatactggaatagagaaattatacaaatgctcaaaatacatgtagca
cttggttgtggtctga
gaattctaagagggtattttctgtattctacataaaatataaattttaaa
tgccttgcttccactgggtcttctccaggtaaagcaaggttttcttttcg
tattttccacgataaaatattattgcttctaggaatctaaaggtggcttc
agaggaagtaaaatttcctggtgtatgaagtattatgtacacttatgttc
taacggtattcaagctatttagatttttctgtgcctctccctcagttgga
aacaacctgccccctctttcacctgtccaaatgtggttcagctgcctctc
aacatgagatccttgacagctgacttccttcccaccgctgtttacagcct
ttttactacctcgtcttcctttctctgcactgggacaccagtgaggctaa
cttctaatgtctgcctctcactttgtgccttttccctaacaacattctgg
agttgaataattcagtttttccctttaattgacttaattaggtatattca
gcctaaatttgtgtgtgtgagcacacctatttaacacaaggcctcaaaca
tgttaactaatgatatctatcactaagttatcctccactgcctaagccta
attttaaattgaggagttttattataaacactaataacagatattggtta
ggtaggagatccagtctcgatgtattacagactccattcctatgagacag
cataaataatccctatactccaatttatcccagcgataggtgagcaggtc
caggtgaacctcagaaacaaacttgtaaagcctgtttctgctagaaggaa
agggaccatggagaggaagacaacgcttgaagaaaaagaaaagcatgtta
aaagatggctagatcctttagtcttgtgttggcctcttactttcctggtt
agggactaagttctaagcacttaaatagcccgaagagaaagtttgcagat
tagagcttagatacatcctcgtcatgatacctgcccctggcttttcggct
tcctgttgaatggcctgacggaataagttgccatggaccaggatggagat
aagaactagtaaggcagttcgatgccaacccttttctcaatgcttgaaaa
tgggcctcctcacttggtccttcgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_60272331_60273454
seq2: B6Ng01-098A01.b_42_1157 (reverse)

seq1  TCAGACACAAACCAAGTGCTACATGTATTTTTGGAGCATTTTGTATAATT  50
      ||||||   ||||||||||||||||||||||  ||||| ||||||||| |
seq2  TCAGACCACAACCAAGTGCTACATGTATTTT--GAGCA-TTTGTATAA-T  46

seq1  TTCTCTATTCCAGTATTCCATTTTGCAGATTTCAATTGCCTTTACTTATA  100
      ||||||||||||||| |||||||||||||||||||||| |||||||   |
seq2  TTCTCTATTCCAGTA-TCCATTTTGCAGATTTCAATTG-CTTTACTATAA  94

seq1  TTTATTTCTGGTCCCTAAACTGGTCTTTTGTACCATTCTCTGCAGTAATT  150
      ||||||||||||||||||||||||| ||||||||| ||||||||||||||
seq2  TTTATTTCTGGTCCCTAAACTGGTC-TTTGTACCA-TCTCTGCAGTAATT  142

seq1  CTGAAAGT-ATCCCTAAAAACAAATCTGAAGTGATCCTTGAGTTCAACAT  199
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGTAATCCCTAAAAACAAATCTGAAGTGATCCTTGAGTTCAACAT  192

seq1  GTTTGCCTTCTTCAATATATGACCGTTTTCTGACCTGATTTCTGGGACCT  249
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTTTGCCTTCTTCAATATATGACCGTTTTCTGA-CTGATTTCTGGGACCT  241

seq1  ATTTTGTCCATTTTATACTGTTTAAAACAGGAAAGCATGTGTATGACAGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTCCATTTTATACTGTTTAAAACAGGAAAGCATGTGTATGACAGT  291

seq1  TATTCCAACATAGTTGTAATGGCTTCATTTTCTTAATTACAATTTTCTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCAACATAGTTGTAATGGCTTCATTTTCTTAATTACAATTTTCTGT  341

seq1  TAGAACATTTTATAGCTCTGTTTGGCAGTGTTGTGTATGAAGTTGGATAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACATTTTATAGCTCTGTTTGGCAGTGTTGTGTATGAAGTTGGATAT  391

seq1  TTGTCATTCTGTTGTGTAAGAATGTAGTAAAGGCAAACAGCATTTATTAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATTCTGTTGTGTAAGAATGTAGTAAAGGCAAACAGCATTTATTAC  441

seq1  AGGATGGTAAAAAGAAAGGGCAGACAAGGGCTGGGCATATGGCTCAGTCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGTAAAAAGAAAGGGCAGACAAGGGCTGGGCATATGGCTCAGTCA  491

seq1  CTAAAGTACTTGCTGTGCAAACATGAGGACCTACACCGTAGCACATGCCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGTACTTGCTGTGCAAACATGAGGACCTACACCGTAGCACATGCCT  541

seq1  GTAATTCCAGTGTTCCAGGACATCACATACATGCACATGAACTTATTAAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTCCAGTGTTCCAGGACATCACATACATGCACATGAACTTATTAAC  591

seq1  ACCTCTCCCAGAATCGGAGTGGAACAACAGTTTGTCAGTAGAGAACTGGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTCCCAGAATCGGAGTGGAACAACAGTTTGTCAGTAGAGAACTGGG  641

seq1  TAATGCAAACTGGGGATAGAGTTCAAGGGAGACTGGTTAAAGAAATGCTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCAAACTGGGGATAGAGTTCAAGGGAGACTGGTTAAAGAAATGCTC  691

seq1  ATCCTGATTTAATTTTGTGCTTTGGTAATAAAGATGAATAAGGTAGATTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGATTTAATTTTGTGCTTTGGTAATAAAGATGAATAAGGTAGATTA  741

seq1  TCTGTTAAATTATGGTAATATCCATAATAAATTAAAAAACTACAAGCATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTAAATTATGGTAATATCCATAATAAATTAAAAAACTACAAGCATG  791

seq1  TTCAGGAGAGTCAACTTTCTATATCTCTTGAGTTCCACATTTGCAGATAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGAGAGTCAACTTTCTATATCTCTTGAGTTCCACATTTGCAGATAC  841

seq1  ACCTGTAGCTTGAAATCATGTAGTGGGAAAGAAATTGCATCTATACATGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTAGCTTGAAATCATGTAGTGGGAAAGAAATTGCATCTATACATGC  891

seq1  CCAGACTTTTTCTTGTTTTCACCTCCTAAACAGTGCAGTGTTACAGTTAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACTTTTTCTTGTTTTCACCTCCTAAACAGTGCAGTGTTACAGTTAC  941

seq1  TTACATACTTTTTACATCATTTTAGATAGCCTCCATAATCTAGAGTGGTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATACTTTTTACATCATTTTAGATAGCCTCCATAATCTAGAGTGGTT  991

seq1  TAACATATATGAGAGGATTAGTATAGGCTCCAAGCAAATTCTGCATCATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATATATGAGAGGATTAGTATAGGCTCCAAGCAAATTCTGCATCATT  1041

seq1  TTACTCAGGGGCTTGAATACCCATGGCTTTTTGTATTCTGAGGTGAGGCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCAGGGGCTTGAATACCCATGGCTTTTTGTATTCTGAGGTGAGGCT  1091

seq1  CCTGGAACCAATGATCCCTGAATTC  1124
      |||||||||||||||||||||||||
seq2  CCTGGAACCAATGATCCCTGAATTC  1116

seq1: chr1_60132324_60133477
seq2: B6Ng01-098A01.g_66_1191

seq1  GAATTCTAAGAGGGTATTTTCTGTATTCTACATAAAATATAAATTTTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGAGGGTATTTTCTGTATTCTACATAAAATATAAATTTTAAA  50

seq1  TGCCTTGCTTCCACTGGGTCTTCTCCAGGTAAAGCAAGGTTTTCTTTTCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGCTTCCACTGGGTCTTCTCCAGGTAAAGCAAGGTTTTCTTTTCG  100

seq1  TATTTTCCACGATAAAATATTATTGCTTCTAGGAATCTAAAGGTGGCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCCACGATAAAATATTATTGCTTCTAGGAATCTAAAGGTGGCTTC  150

seq1  AGAGGAAGTAAAATTTCCTGGTGTATGAAGTATTATGTACACTTATGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAGTAAAATTTCCTGGTGTATGAAGTATTATGTACACTTATGTTC  200

seq1  TAACGGTATTCAAGCTATTTAGATTTTTCTGTGCCTCTCCCTCAGTTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGGTATTCAAGCTATTTAGATTTTTCTGTGCCTCTCCCTCAGTTGGA  250

seq1  AACAACCTGCCCCCTCTTTCACCTGTCCAAATGTGGTTCAGCTGCCTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACCTGCCCCCTCTTTCACCTGTCCAAATGTGGTTCAGCTGCCTCTC  300

seq1  AACATGAGATCCTTGACAGCTGACTTCCTTCCCACCGCTGTTTACAGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGAGATCCTTGACAGCTGACTTCCTTCCCACCGCTGTTTACAGCCT  350

seq1  TTTTACTACCTCGTCTTCCTTTCTCTGCACTGGGACACCAGTGAGGCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTACCTCGTCTTCCTTTCTCTGCACTGGGACACCAGTGAGGCTAA  400

seq1  CTTCTAATGTCTGCCTCTCACTTTGTGCCTTTTCCCTAACAACATTCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAATGTCTGCCTCTCACTTTGTGCCTTTTCCCTAACAACATTCTGG  450

seq1  AGTTGAATAATTCAGTTTTTCCCTTTAATTGACTTAATTAGGTATATTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAATAATTCAGTTTTTCCCTTTAATTGACTTAATTAGGTATATTCA  500

seq1  GCCTAAATTTGTGTGTGTGAGCACACCTATTTAACACAAGGCCTCAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAATTTGTGTGTGTGAGCACACCTATTTAACACAAGGCCTCAAACA  550

seq1  TGTTAACTAATGATATCTATCACTAAGTTATCCTCCACTGCCTAAGCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAACTAATGATATCTATCACTAAGTTATCCTCCACTGCCTAAGCCTA  600

seq1  ATTTTAAATTGAGGAGTTTTATTATAAACACTAATAACAGATATTGGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAATTGAGGAGTTTTATTATAAACACTAATAACAGATATTGGTTA  650

seq1  GGTAGGAGATCCAGTCTCGATGTATTACAGACTCCATTCCTATGAGACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGAGATCCAGTCTCGATGTATTACAGACTCCATTCCTATGAGACAG  700

seq1  CATAAATAATCCCTATACTCCAATTTATCCCAGCGATAGGTGAGCAGGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATAATCCCTATACTCCAATTTATCCCAGCGATAGGTGAGCAGGTC  750

seq1  CAGGTGAACCTCAGAAACAAACTTGTAAAGCCTGTTTCTGCTAGAAGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGAACCTCAGAAACAAACTTGTAAAGCCTGTTTCTGCTAGAAGGAA  800

seq1  AGGGACCATGGAGAGGAAGACAACGCTTGAAGAAAAAGAAAAGCATGTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACCATGGAGAGGAAGACAACGCTTGAAGAAAAAGAAAAGCATGTTA  850

seq1  AAAGATGGCTAGATCCTTTAGTCTTGTGTTGGCCTCTTACTTTCCTGGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGGCTAGATCCTTTAGTCTTGTGTTGGCCTCTTACTTTCCTGGTT  900

seq1  AGGGACTAAGTTCTAAGCACTTAAATAGCCCGAAGGAGAAAAGTTTGGCA  950
      |||||||||||||||||||||||||||||||||| ||| ||||||| |||
seq2  AGGGACTAAGTTCTAAGCACTTAAATAGCCCGAA-GAG-AAAGTTT-GCA  947

seq1  GATTAAGAGGCTTAGATACAATCCTCGTCAATGATACCTGGCCCCTGGCT  1000
      |||| ||| |||||||||| ||||||||| ||||||||| ||||||||||
seq2  GATT-AGA-GCTTAGATAC-ATCCTCGTC-ATGATACCT-GCCCCTGGCT  992

seq1  TTTCGGGCTTCCCTGTTGAAATGGCCTGAACAGAAATAAGGTTGCCATGG  1050
      |||| ||||| ||||||| ||||||||||   | ||||| ||||||||||
seq2  TTTC-GGCTT-CCTGTTG-AATGGCCTGA--CGGAATAA-GTTGCCATGG  1036

seq1  AACCAGGATTGAGATTAAGACTAGGTAAAGGGCCAGTTTCAGATGCCACA  1100
       |||||||| ||||| |  |||| ||||   | |||||   ||||||| |
seq2  -ACCAGGATGGAGATAAGAACTA-GTAA---GGCAGTT--CGATGCCA-A  1078

seq1  CCCTTTCTTCCATTTGTCTTTGATACATGGGCCTCCTCACCTTTGTTCTT  1150
      ||||||  || |    |  |||| | ||||||||||||| ||| || |||
seq2  CCCTTTTCTCAA----TGCTTGA-AAATGGGCCTCCTCA-CTTGGTCCTT  1122

seq1  CGGA  1154
      ||||
seq2  CGGA  1126