BAC Information

Click to search

BAC

Clone NameB6Ng01-098B16
Chromosome1 (Build37)
Map Location 154,581,734 - 154,763,915
singlet/doubletdoublet
Overlap geneApobec4, Arpc5, Ncf2, Smg7
Upstream geneEdem3, 1700025G04Rik, LOC668076, 5730449L18Rik, Glt25d2, Rgl1, EG639787
Downstream geneEG668097, Nmnat2, Lamc2, Lamc1, EG667795, EG626058, 1700012A16Rik, Dhx9, Npl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098B16.bB6Ng01-098B16.g
ACCDH908289DH908290
length1,105436
definitionDH908289|Mus musculus domesticus DNA, BAC clone: B6Ng01-098B16, 5' end.DH908290|Mus musculus domesticus DNA, BAC clone: B6Ng01-098B16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,581,734 - 154,582,887)(154,763,474 - 154,763,915)
sequence
gaattctacaaaatctcttcctcaaagacaagttccctctatctggcagg
cacaaaatcttcaaccatctctgccctgtcactagttccggaggaaaccc
cagtgccctgggctccactgtcctaactgccataaggaagggcacgaggg
tttctccttataccatcttctctcctgccaggagggttacggccatcctt
cagcatccaaaggaaagaaagacagtctaagataagtaaacactaaggga
gttcatggccatagccaagcatcaccataaaagatggctaggaaggacct
gtgcccagaaatggaaggaagacaactaccatcacaacagcaggtaagga
gtagattccaaggaaagcagaaacacttaagtgtgggtggggacaggatg
gcgggctgtgtctgtgtggtatactgaaggaagagagttgagacaaaaag
aagagactcttccaaaatagaaaaagaaagaaagaaagaaagaaagaaag
aaagaaagaaagaaaggaagaaaggaagaaagaaaggaaggaagaaagga
agaaaggaagaaaggaagaaaggaagaaaggaagaaaggaagaaaggaag
aaaggaagaaaggaagaaaggaagaaaggaagaaaggaagaaaggaagaa
aggaagaaaggaagaaaggaagaaaggaagaaaggaagaaaggaagaaag
gaagaaaggaagaaaggaagaaaggaagaaagaaagaaagaaagaaagaa
agaaagaagaaagaagaagttcaaaagagaggaagggcagctcaaaggta
taaagaaaggaaagctccccaccccatccacggtgcagcagagggaagca
gaggcctcatcctgaagtaagcctgaggagtctggtgagaactgaccggc
agtcctacccacgggatgagtctgcagcccaagctgctgagttttggtga
ctctcagaagacagtctgcagtacagcaacccatttactctcccctgcta
aagtactgtgatagtcacatctgggaggaccctaaatgggctactctggg
acaggaacagaccatcatagtcagaaatgatcagtctgtacgctccatcc
agtga
ttaactctgctggcaagagattcaaacaagagtcctgagtgagggctctt
ttcctttcccatgtcttcttaattgtccttaactcttatatgctgcctca
gcaatgctgttcctctggggtctgtcaggctccttgaactaggtcttacc
tggaagcctcattatcacagattacaatgaaagtcccactcagagctaca
cggaactagagatcaccaagtctgctgtggtctggagaccagagtcctat
ctgcttctccagaagatcatggacccaaattcttaaacctctgatgaaaa
gtaggttctaaatgataggcagggaaacacgagggcctgggtttgaattt
ccagcactgtgtaaaaggccaagcacggagctgtctttttgttgctgttt
tttttttttttttccaagacagggtttctctgtgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_154581734_154582887
seq2: B6Ng01-098B16.b_45_1149

seq1  GAATTCTACAAAATCTCTTCCTCAAAGACAAGTTCCCTCTATCTGGCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACAAAATCTCTTCCTCAAAGACAAGTTCCCTCTATCTGGCAGG  50

seq1  CACAAAATCTTCAACCATCTCTGCCCTGTCACTAGTTCCGGAGGAAACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAATCTTCAACCATCTCTGCCCTGTCACTAGTTCCGGAGGAAACCC  100

seq1  CAGTGCCCTGGGCTCCACTGTCCTAACTGCCATAAGGAAGGGCACGAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCCCTGGGCTCCACTGTCCTAACTGCCATAAGGAAGGGCACGAGGG  150

seq1  TTTCTCCTTATACCATCTTCTCTCCTGCCAGGAGGGTTACGGCCATCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTTATACCATCTTCTCTCCTGCCAGGAGGGTTACGGCCATCCTT  200

seq1  CAGCATCCAAAGGAAAGAAAGACAGTCTAAGATAAGTAAACACTAAGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCCAAAGGAAAGAAAGACAGTCTAAGATAAGTAAACACTAAGGGA  250

seq1  GTTCATGGCCATAGCCAAGCATCACCATAAAAGATGGCTAGGAAGGACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATGGCCATAGCCAAGCATCACCATAAAAGATGGCTAGGAAGGACCT  300

seq1  GTGCCCAGAAATGGAAGGAAGACAACTACCATCACAACAGCAGGTAAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCAGAAATGGAAGGAAGACAACTACCATCACAACAGCAGGTAAGGA  350

seq1  GTAGATTCCAAGGAAAGCAGAAACACTTAAGTGTGGGTGGGGACAGGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATTCCAAGGAAAGCAGAAACACTTAAGTGTGGGTGGGGACAGGATG  400

seq1  GCGGGCTGTGTCTGTGTGGTATACTGAAGGAAGAGAGTTGAGACAAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGCTGTGTCTGTGTGGTATACTGAAGGAAGAGAGTTGAGACAAAAAG  450

seq1  AAGAGACTCTTCCAAAATAGAAAAAGAAAGAAAGAAAGAAAGAAAGAAAG  500
      ||||||||||||||||||||||    ||||||||||||||||||||||||
seq2  AAGAGACTCTTCCAAAATAGAA----AAAGAAAGAAAGAAAGAAAGAAAG  496

seq1  AAAGAAAGAAAGAAAGAAAGGAAGAAAGGAAGAAAGAAAGGAAGGAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAGAAAGAAAGGAAGAAAGGAAGAAAGAAAGGAAGGAAGAA  546

seq1  AGGAAGAAAGGAAGAAAGGAAGAAAGGAAGAAAGGAAGAAAGGAAGAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAAAGGAAGAAAGGAAGAAAGGAAGAAAGGAAGAAAGGAAGAAAG  596

seq1  GAAGAAAGGAAGAAAGGAAGAAAGGAAGAAAGGAAGAAAGGAAGAAAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAGGAAGAAAGGAAGAAAGGAAGAAAGGAAGAAAGGAAGAAAGGA  646

seq1  AGAAAGGAAGAAAGGAAGAAAGGAAGAAAGGAAGAAAGGAAGAAAGGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGAAGAAAGGAAGAAAGGAAGAAAGGAAGAAAGGAAGAAAGGAAG  696

seq1  AAAGGAAGAAAGGAAGAAAGGAAGAAAGGAAGAAAGAAAGAAAGAAAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAGAAAGGAAGAAAGGAAGAAAGGAAGAAAGAAAGAAAGAAAGAA  746

seq1  AGAAAGAAAGAAAGAAAGAAAGAAGTTCAAAAGAGAGGAAGGGCAGCTCA  800
      |||||||||| ||||||| |||||||||||||||||||||||||||||||
seq2  AGAAAGAAAG-AAGAAAG-AAGAAGTTCAAAAGAGAGGAAGGGCAGCTCA  794

seq1  AAGGTATAAAGAAAGGAAAGCTCCCCACCCCATCCACGGTGCAGGCAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AAGGTATAAAGAAAGGAAAGCTCCCCACCCCATCCACGGTGCA-GCAGAG  843

seq1  GGAAGCAGAGGCCTCATCCTGAAGGTAAGCCTGAGGAGTCTGGTGAGAAC  900
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GGAAGCAGAGGCCTCATCCTGAA-GTAAGCCTGAGGAGTCTGGTGAGAAC  892

seq1  TGACCGGCAGTCCTACCCACGGGATGAAGTCTTGCAAGCCCCAAAGCCTG  950
      |||||||||||||||||||||||||| |||| ||| |||||  ||| |||
seq2  TGACCGGCAGTCCTACCCACGGGATG-AGTC-TGC-AGCCC--AAG-CTG  936

seq1  CTGAGGTTTTGGTGACCTCTCCAGAAGAACAGTCTGGCAGTACAGCAAAC  1000
      |||| |||||||||| |||| |||||| ||||||| ||||||||||||  
seq2  CTGA-GTTTTGGTGA-CTCT-CAGAAG-ACAGTCT-GCAGTACAGCAA--  979

seq1  CCCATTTTACTCCTCCCCCTGGCTTAAAAGTACTGTGAATAGTCACCATC  1050
      |||| |||||| ||||||   |||  ||||||||||| ||||||| ||||
seq2  CCCA-TTTACT-CTCCCC--TGCT--AAAGTACTGTG-ATAGTCA-CATC  1021

seq1  TTGGGAGGGACCCTAAAATGGGCTACTCTGGGGACCAGAGAACAAGGAAC  1100
       ||||| ||||||| |||||||||||||||||   ||| |||||    ||
seq2  -TGGGA-GGACCCT-AAATGGGCTACTCTGGG--ACAG-GAACA---GAC  1062

seq1  AATCATAAGTCAAAGAACATGAATTCAGTCTGTAACAGCTCCAACCCTCA  1150
       ||||| ||||  |||| ||||  ||||||||||   |||||| |   ||
seq2  CATCAT-AGTC--AGAA-ATGA--TCAGTCTGTA--CGCTCCATC---CA  1101

seq1  GTGA  1154
      ||||
seq2  GTGA  1105

seq1: chr1_154763474_154763915
seq2: B6Ng01-098B16.g_69_510 (reverse)

seq1  TACACAGAGAAACCCTGTCTTGGAAAAAAAAAAAAAAAACAGCAACAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGAGAAACCCTGTCTTGGAAAAAAAAAAAAAAAACAGCAACAAAA  50

seq1  AGACAGCTCCGTGCTTGGCCTTTTACACAGTGCTGGAAATTCAAACCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCTCCGTGCTTGGCCTTTTACACAGTGCTGGAAATTCAAACCCAG  100

seq1  GCCCTCGTGTTTCCCTGCCTATCATTTAGAACCTACTTTTCATCAGAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCGTGTTTCCCTGCCTATCATTTAGAACCTACTTTTCATCAGAGGT  150

seq1  TTAAGAATTTGGGTCCATGATCTTCTGGAGAAGCAGATAGGACTCTGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAATTTGGGTCCATGATCTTCTGGAGAAGCAGATAGGACTCTGGTC  200

seq1  TCCAGACCACAGCAGACTTGGTGATCTCTAGTTCCGTGTAGCTCTGAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGACCACAGCAGACTTGGTGATCTCTAGTTCCGTGTAGCTCTGAGTG  250

seq1  GGACTTTCATTGTAATCTGTGATAATGAGGCTTCCAGGTAAGACCTAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTCATTGTAATCTGTGATAATGAGGCTTCCAGGTAAGACCTAGTT  300

seq1  CAAGGAGCCTGACAGACCCCAGAGGAACAGCATTGCTGAGGCAGCATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGCCTGACAGACCCCAGAGGAACAGCATTGCTGAGGCAGCATATA  350

seq1  AGAGTTAAGGACAATTAAGAAGACATGGGAAAGGAAAAGAGCCCTCACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTAAGGACAATTAAGAAGACATGGGAAAGGAAAAGAGCCCTCACTC  400

seq1  AGGACTCTTGTTTGAATCTCTTGCCAGCAGAGTTAAGAATTC  442
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTCTTGTTTGAATCTCTTGCCAGCAGAGTTAAGAATTC  442