BAC Information

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BAC

Clone NameB6Ng01-098C12
Chromosome1 (Build37)
Map Location 36,762,860 - 36,904,207
singlet/doubletdoublet
Overlap geneActr1b, 4933424G06Rik, Zap70, Tmem131
Upstream geneLOC100041544, LOC666283, LOC100041091, EG666290, Hs6st1, Ugcgl1, LOC100041123, Lincr, Arid5a, 4632411B12Rik, 4930533C12Rik, Lman2l, Cnnm4, Cnnm3, Ankrd23, Ankrd39, Sema4c, 1700024G10Rik, BC050210, EG623414, Cox5b
Downstream geneEG241053, A230074B11Rik, 4921511C04Rik, Cnga3, Inpp4a, 6330578E17Rik, Unc50, Mgat4a, 2010300C02Rik, Tsga10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098C12.bB6Ng01-098C12.g
ACCDH908328DH908329
length1,1521,126
definitionDH908328|Mus musculus domesticus DNA, BAC clone: B6Ng01-098C12, 5' end.DH908329|Mus musculus domesticus DNA, BAC clone: B6Ng01-098C12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,762,860 - 36,764,012)(36,903,079 - 36,904,207)
sequence
gaattcttgaaatatgcccgccccagtccctcttctttccatacacacgt
tcctcgctcactgcctaggctctctccagcatctcattatacactgtcca
gcatccatctgcagcacagtagcccatgctctgtctgcactgtcccccca
ggccacctgagcccatcattcctccagagtacagctggagctctgacctc
ttggcccaactccccacctgccctcgcctgtctgtctaggagacactttg
cttctcatacaacagtggctggctttcatctcccacagcctctcgtgtgc
ccttctattcaggcctccccttcccaggtgccttattccccaggtgccta
cctggcacctgcctgtgcttggctgacacttcccccacaccctatactgg
caccctcagagtctgattcaatgtgcagtccccaggtaggccatcctagc
cagaataagaaatggccccggccttcctcagagcaggtatcaggtccata
aaacctaggtgattctaattcttaactcacttttgggggtggctgaagaa
gactttgagcttctggtcttcctgtctccacccctcccaagtgctgtgac
cttaatcagttctttctcctatagtttccagtttctgaaagcggacacgg
agtcaaaccacgagttcctcaggaacgttggttcattggcatcgtacaga
aggggggttgcctctacacacacacacacacacacacacacaaacacaca
cacactgaactgaaggtaagaggcccaagaaggcacagaaaggaacaggt
tgctctgatcaccagctagatctatgactgacaaactcaacttagggaca
gttacctctgctttcggtccaatgaacaggtccccctccagggctccagc
cataacccgcatgtgctttggccgtccgacactgcaaggtcacagaaggt
cagtgagttgggcaggtgcatggctgaacctgtgtccaggaaactggagt
ccaactgcagagctctagagggtggccatgctaagcactgggaagtggct
cagagcctagacctatggggaatggggaaagcagcctggctcttaaagca
caagcactttggggtctgaaagaacgagcctcctcccaggagggcctaag
tg
gaattcctgacatcctgacttggtgctgcttctctgctgtgtacacctag
atctttaagtctcttgcattcggtggttcagttctttctctagatttagg
aagattttttaaccataattctattaagtaggttctctctgccttaagct
ttatctctagttctttacctcaaggattcttaggtcctgtctcttaatca
aatgtgggaggtcctggtccctgccattgagtttgcctgttcctttaggg
atgcttgaccttgtgtcccaccgctgacatcttccttctgcttgggcaag
tctttcagagacacttggcactctgctttttatttgagtcgttgagcttt
tcttttctagtgactctgttttgttttgagtctcagtttttttgctgatg
ttcacctctcattgctggttttctcttctttgttgctgttttccctctca
gtccaggattggtctccttacctcattcatctgtgtggttgcccttcttg
ggggttttgcttttatgatatctatccatcagctgttttagctacttcgg
tttctgactctgactgttaaggaattgtaattgcaggagaggccttgtct
ctctacctttccacgttgcagtttgtgcatgtttgtttcgctgtcttcct
gacttatttggttatcattttagtgtgcagcttgcccctaagagctcaat
ttcctttccccttagaaaggaaaaaagccagagctatagcttatagctgt
aacatcgaatcatgcaggacaaagaaagagacagaaaataaagtaaatgc
cacctgcataccactgtttaataaaacttgacaaagctaatggagagttg
gctttgaagttaaaaattattttgagtggggctagatagacagctcagtg
gtttagagtgcttgttgctctttgcaaaggacctaggttctgttccagca
cccacatggccgctcacaaccacctgcagcttcacttccaaaggctctgg
caccatcttctgacctcatcaggcatcgggacagacatgcaggcaaaccc
tcacacacaaaaatagtctacctttttaaaatacttagggtaggatgaaa
ataacaaatggatgggttaaagaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_36762860_36764012
seq2: B6Ng01-098C12.b_47_1198

seq1  GAATTCTTGAAATATGCCCGCCCCAGTCCCTCTTCTTTCCATACACACGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAAATATGCCCGCCCCAGTCCCTCTTCTTTCCATACACACGT  50

seq1  TCCTCGCTCACTGCCTAGGCTCTCTCCAGCATCTCATTATACACTGTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCGCTCACTGCCTAGGCTCTCTCCAGCATCTCATTATACACTGTCCA  100

seq1  GCATCCATCTGCAGCACAGTAGCCCATGCTCTGTCTGCACTGTCCCCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCATCTGCAGCACAGTAGCCCATGCTCTGTCTGCACTGTCCCCCCA  150

seq1  GGCCACCTGAGCCCATCATTCCTCCAGAGTACAGCTGGAGCTCTGACCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACCTGAGCCCATCATTCCTCCAGAGTACAGCTGGAGCTCTGACCTC  200

seq1  TTGGCCCAACTCCCCACCTGCCCTCGCCTGTCTGTCTAGGAGACACTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCCAACTCCCCACCTGCCCTCGCCTGTCTGTCTAGGAGACACTTTG  250

seq1  CTTCTCATACAACAGTGGCTGGCTTTCATCTCCCACAGCCTCTCGTGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCATACAACAGTGGCTGGCTTTCATCTCCCACAGCCTCTCGTGTGC  300

seq1  CCTTCTATTCAGGCCTCCCCTTCCCAGGTGCCTTATTCCCCAGGTGCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTATTCAGGCCTCCCCTTCCCAGGTGCCTTATTCCCCAGGTGCCTA  350

seq1  CCTGGCACCTGCCTGTGCTTGGCTGACACTTCCCCCACACCCTATACTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCACCTGCCTGTGCTTGGCTGACACTTCCCCCACACCCTATACTGG  400

seq1  CACCCTCAGAGTCTGATTCAATGTGCAGTCCCCAGGTAGGCCATCCTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCAGAGTCTGATTCAATGTGCAGTCCCCAGGTAGGCCATCCTAGC  450

seq1  CAGAATAAGAAATGGCCCCGGCCTTCCTCAGAGCAGGTATCAGGTCCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATAAGAAATGGCCCCGGCCTTCCTCAGAGCAGGTATCAGGTCCATA  500

seq1  AAACCTAGGTGATTCTAATTCTTAACTCACTTTTGGGGGTGGCTGAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTAGGTGATTCTAATTCTTAACTCACTTTTGGGGGTGGCTGAAGAA  550

seq1  GACTTTGAGCTTCTGGTCTTCCTGTCTCCACCCCTCCCAAGTGCTGTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGAGCTTCTGGTCTTCCTGTCTCCACCCCTCCCAAGTGCTGTGAC  600

seq1  CTTAATCAGTTCTTTCTCCTATAGTTTCCAGTTTCTGAAAGCGGACACGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATCAGTTCTTTCTCCTATAGTTTCCAGTTTCTGAAAGCGGACACGG  650

seq1  AGTCAAACCACGAGTTCCTCAGGAACGTTGGTTCATTGGCATCGTACAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAACCACGAGTTCCTCAGGAACGTTGGTTCATTGGCATCGTACAGA  700

seq1  AGGGGGGTTGCCTCTACACACACACACACACACACACACACAAACACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGGTTGCCTCTACACACACACACACACACACACACACAAACACACA  750

seq1  CACACTGAACTGAAGGTAAGAGGCCCAAGAAGGCACAGAAAGGAACAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGAACTGAAGGTAAGAGGCCCAAGAAGGCACAGAAAGGAACAGGT  800

seq1  TGCTCTGATCACCAGCTAGATCTATGACTGACAAACTCAACTTAGGGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGATCACCAGCTAGATCTATGACTGACAAACTCAACTTAGGGACA  850

seq1  GTTACCTCTGCTTTCGGTCCAATGAACAGGTCCCCCTCCAGGGCTCCAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCTCTGCTTTCGGTCCAATGAACAGGTCCCCCTCCAGGGCTCCAGC  900

seq1  CATAACCCGCATGTGCTTTGGCCGTCCGACACTGCAAGGTCACAGAAGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACCCGCATGTGCTTTGGCCGTCCGACACTGCAAGGTCACAGAAGGT  950

seq1  CAGTGAGTTGGGCAGGTGCATGGCTGAACCTGTGTCCAGGAAAACTGGAG  1000
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAGTGAGTTGGGCAGGTGCATGGCTGAACCTGTGTCCAGG-AAACTGGAG  999

seq1  TCCAACTGCAGAGCTCTAGAGGGTGGCCATGCTAAGCACTGGGAAGTGGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACTGCAGAGCTCTAGAGGGTGGCCATGCTAAGCACTGGGAAGTGGC  1049

seq1  TCAGAGCCTAGACCTATGGGGAGT-GGGAAAGCAGCCTGGCTCTTAGAAG  1099
      |||||||||||||||||||||| | ||||||||||||||||||||| |||
seq2  TCAGAGCCTAGACCTATGGGGAATGGGGAAAGCAGCCTGGCTCTTA-AAG  1098

seq1  CACAAGCACTTTGGGGTCTGAAGGAACGAGCCTCTCCCCAGGGAGGGCTA  1149
      |||||||||||||||||||||| |||||||||||  ||||||  || |||
seq2  CACAAGCACTTTGGGGTCTGAAAGAACGAGCCTCCTCCCAGGAGGGCCTA  1148

seq1  AGTG  1153
      ||||
seq2  AGTG  1152

seq1: chr1_36903079_36904207
seq2: B6Ng01-098C12.g_69_1194 (reverse)

seq1  TCTTCTTTTACCCCATCCATTTGTTATTTTCATCCTAACCCTAAGTAATT  50
      ||||| |||| ||||||||||||||||||||||||| ||||||||| |||
seq2  TCTTC-TTTAACCCATCCATTTGTTATTTTCATCCT-ACCCTAAGT-ATT  47

seq1  TTAAAAAGTAAGACTTATTTTTGTGTGTGAGTGTTTTGCCTGCATGTCTG  100
      ||||||||  |||| |||||||||||||||| | ||||||||||||||||
seq2  TTAAAAAGGTAGAC-TATTTTTGTGTGTGAG-GGTTTGCCTGCATGTCTG  95

seq1  T-CCGGTGCCTGATGAGGTCAGAAGATGGTGCCAGAGCCTTTGGAAGTGA  149
      | ||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGATGCCTGATGAGGTCAGAAGATGGTGCCAGAGCCTTTGGAAGTGA  145

seq1  AGCTGCAGGTGGTTGTGAGCGGCCATGTGGGTGCTGGGAACAGAACCTAG  199
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGCTGCAGGTGGTTGTGAGCGGCCATGTGGGTGCT-GGAACAGAACCTAG  194

seq1  GTCCTCTGC-AAGAGCAACAAGCACTCTAAACCACTGAGCTGTCTATCTA  248
      ||||| ||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTGCAAAGAGCAACAAGCACTCTAAACCACTGAGCTGTCTATCTA  244

seq1  GCCCCACTCAAAATAATTTTTAACTTCAAAGCCAACTCTCCATTAGCTTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCACTCAAAATAATTTTTAACTTCAAAGCCAACTCTCCATTAGCTTT  294

seq1  GTCAAGTTTTATTAAACAGTGGTATGCAGGTGGCATTTACTTTATTTTCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGTTTTATTAAACAGTGGTATGCAGGTGGCATTTACTTTATTTTCT  344

seq1  GTCTCTTTCTTTGTCCTGCATGATTCGATGTTACAGCTATAAGCTATAGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTTCTTTGTCCTGCATGATTCGATGTTACAGCTATAAGCTATAGC  394

seq1  TCTGGC-TTTTTCCTTTCTAAGGGGAAAGGAAATTGAGCTCTTAGGGGCA  447
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTTTTTTCCTTTCTAAGGGGAAAGGAAATTGAGCTCTTAGGGGCA  444

seq1  AGCTGCACACTAAAATGATAACCAAATAAGTCAGGAAGACAGCGAAACAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCACACTAAAATGATAACCAAATAAGTCAGGAAGACAGCGAAACAA  494

seq1  ACATGCACAAACTGCAACGTGGAAAGGTAGAGAGACAAGGCCTCTCCTGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCACAAACTGCAACGTGGAAAGGTAGAGAGACAAGGCCTCTCCTGC  544

seq1  AATTACAATTCCTTAACAGTCAGAGTCAGAAACCGAAGTAGCTAAAACAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACAATTCCTTAACAGTCAGAGTCAGAAACCGAAGTAGCTAAAACAG  594

seq1  CTGATGGATAGATATCATAAAAGCAAAACCCCCAAGAAGGGCAACCACAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGATAGATATCATAAAAGCAAAACCCCCAAGAAGGGCAACCACAC  644

seq1  AGATGAATGAGGTAAGGAGACCAATCCTGGACTGAGAGGGAAAACAGCAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAATGAGGTAAGGAGACCAATCCTGGACTGAGAGGGAAAACAGCAA  694

seq1  CAAAGAAGAGAAAACCAGCAATGAGAGGTGAACATCAGCAAAAAAACTGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAGAGAAAACCAGCAATGAGAGGTGAACATCAGCAAAAAAACTGA  744

seq1  GACTCAAAACAAAACAGAGTCACTAGAAAAGAAAAGCTCAACGACTCAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAAAACAAAACAGAGTCACTAGAAAAGAAAAGCTCAACGACTCAAA  794

seq1  TAAAAAGCAGAGTGCCAAGTGTCTCTGAAAGACTTGCCCAAGCAGAAGGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGCAGAGTGCCAAGTGTCTCTGAAAGACTTGCCCAAGCAGAAGGA  844

seq1  AGATGTCAGCGGTGGGACACAAGGTCAAGCATCCCTAAAGGAACAGGCAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTCAGCGGTGGGACACAAGGTCAAGCATCCCTAAAGGAACAGGCAA  894

seq1  ACTCAATGGCAGGGACCAGGACCTCCCACATTTGATTAAGAGACAGGACC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATGGCAGGGACCAGGACCTCCCACATTTGATTAAGAGACAGGACC  944

seq1  TAAGAATCCTTGAGGTAAAGAACTAGAGATAAAGCTTAAGGCAGAGAGAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATCCTTGAGGTAAAGAACTAGAGATAAAGCTTAAGGCAGAGAGAA  994

seq1  CCTACTTAATAGAATTATGGTTAAAAAATCTTCCTAAATCTAGAGAAAGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTTAATAGAATTATGGTTAAAAAATCTTCCTAAATCTAGAGAAAGA  1044

seq1  ACTGAACCACCGAATGCAAGAGACTTAAAGATCTAGGTGTACACAGCAGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACCACCGAATGCAAGAGACTTAAAGATCTAGGTGTACACAGCAGA  1094

seq1  GAAGCAGCACCAAGTCAGGATGTCAGGAATTC  1129
      ||||||||||||||||||||||||||||||||
seq2  GAAGCAGCACCAAGTCAGGATGTCAGGAATTC  1126