BAC Information

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BAC

Clone NameB6Ng01-098F21
Chromosome7 (Build37)1 (Build37)
Map Location 140,623,711 - 140,624,01750,087,658 - 50,088,473
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100043683, Oat, Nkx1-2, 2310007H09Rik, A930008G19Rik, 2010208K18Rik, C430003P19Rik, Zranb1, Ctbp2, LOC668747
Downstream gene4930404H21Rik, LOC100043237, 2700050L05Rik, Mmp21, Uros, Bccip, Dhx32, LOC100043695, Fank1, Adam12, A130023I24Rik, 4933400E14Rik, LOC100043248
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098F21.bB6Ng01-098F21.g
ACCDH908481DH908482
length201850
definitionDH908481|Mus musculus domesticus DNA, BAC clone: B6Ng01-098F21, 5' end.DH908482|Mus musculus domesticus DNA, BAC clone: B6Ng01-098F21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(140,623,711 - 140,624,017)(50,087,658 - 50,088,473)
sequence
ctcctctgattcttttgctttttcttttctcctgtttttaaaaccatgta
aagcttgctctccagctctcttcttcttcttcttcttcttcttcttcttc
ttcttcttcttcttcttcttattcttcttcttcttcttcttcttcttctt
cttcttcttcttcttcttctcctcctcctcctccttctctctctctctct
c
gaattcaggtcaatgctttgagatagaaactcaggtcaatgctttgagat
aatttaatgagttagtgaaaactaatatattcaaaaaagaatgagacaca
cagaaatgtgctctattgaaggatataaaatgtgaatttagaagacaatt
tataatatcatgaataagtatattgaaactataatatactcttcatactg
atagccttgacttaataaaaatatcttatttgttttaggtgtttattagc
ccctcgaaacagtattctttaatacacttgtgtttgttacagcctttgct
gatgcggtccaagtaaataaattctttggagaaattactaaatcaagatc
tcaacagcaagctaaaaagtagaaagtaccagaaggacaggagacaaatg
taaatacatatgagccaatggcatgattaatctagacttctggtgtatag
acgcatagcctgtggtcagatttaaattttgttatcccttactcagacac
atttagtgctgtcaggaaaatgaaattactgctaaatcttcccatactca
caaaaaatattttgtttatcctcttctgcttgcttgcttccttccttttc
ttccttccttccttccttccttccttacttccttccttccttccttcttt
cttttctttctttctttctttctttctttctttctttctttctttctttc
tttctttctttctttctatctgttctgcctttttttaaaaattagatatt
ttcttttatttacattttcaaaatgctatcccgaaagttccctataccct
cccccccgccctggctcccctacccacccactcccacctcttggtcctgg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_140623711_140624017
seq2: B6Ng01-098F21.b_121_253 (reverse)

seq1  GAGAGAGAGAGAAGCAGAGGAGGAGGAAGGGAGAAGGAGGAGGAAGAAGA  50
                                                        
seq2  --------------------------------------------------  0

seq1  AGGGGAAGAAGGAGGAGGAGGAGGAAGAGAAGAAGAAGAAGAAGAAGAAG  100
                                                        
seq2  --------------------------------------------------  0

seq1  AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGAG  150
                                      |||   |||   ||| ||
seq2  --------------------------------GAGAGAGAGAGAGAGAAG  18

seq1  GAGGAGGAGGAGGAGGAGGAGGAGGAGAAGAAGAAGGAGAAGAAGAAGAA  200
      ||||||||||||||| || || || ||||||||||| |||||||||||||
seq2  GAGGAGGAGGAGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA  68

seq1  GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA  250
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGAAGAATAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA  118

seq1  AGAAGAAGAAGAAGAAGAGGAGGGAGGAGGAGGAAGAGAAGAAGGAGAAG  300
      |||||||||||||||                                   
seq2  AGAAGAAGAAGAAGA-----------------------------------  133

seq1  GAGAAGA  307
             
seq2  -------  133

seq1: chr1_50087658_50088473
seq2: B6Ng01-098F21.g_69_892

seq1  GAATTCAGGTCAATGCTTTGAGATAGAAACTCAGGTCAATGCTTTGAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTCAATGCTTTGAGATAGAAACTCAGGTCAATGCTTTGAGAT  50

seq1  AATTTAATGAGTTAGTGAAAACTAATATATTCAAAAAAGAATGAGACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAATGAGTTAGTGAAAACTAATATATTCAAAAAAGAATGAGACACA  100

seq1  CAGAAATGTGCTCTATTGAAGGATATAAAATGTGAATTTAGAAGACAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATGTGCTCTATTGAAGGATATAAAATGTGAATTTAGAAGACAATT  150

seq1  TATAATATCATGAATAAGTATATTGAAACTATAATATACTCTTCATACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATATCATGAATAAGTATATTGAAACTATAATATACTCTTCATACTG  200

seq1  ATAGCCTTGACTTAATAAAAATATCTTATTTGTTTTAGGTGTTTATTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCTTGACTTAATAAAAATATCTTATTTGTTTTAGGTGTTTATTAGC  250

seq1  CCCTCGAAACAGTATTCTTTAATACACTTGTGTTTGTTACAGCCTTTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCGAAACAGTATTCTTTAATACACTTGTGTTTGTTACAGCCTTTGCT  300

seq1  GATGCGGTCCAAGTAAATAAATTCTTTGGAGAAATTACTAAATCAAGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCGGTCCAAGTAAATAAATTCTTTGGAGAAATTACTAAATCAAGATC  350

seq1  TCAACAGCAAGCTAAAAAGTAGAAAGTACCAGAAGGACAGGAGACAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGCAAGCTAAAAAGTAGAAAGTACCAGAAGGACAGGAGACAAATG  400

seq1  TAAATACATATGAGCCAATGGCATGATTAATCTAGACTTCTGGTGTATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACATATGAGCCAATGGCATGATTAATCTAGACTTCTGGTGTATAG  450

seq1  ACGCATAGCCTGTGGTCAGATTTAAATTTTGTTATCCCTTACTCAGACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCATAGCCTGTGGTCAGATTTAAATTTTGTTATCCCTTACTCAGACAC  500

seq1  ATTTAGTGCTGTCAGGAAAATGAAATTACTGCTAAATCTTCCCATACTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTGCTGTCAGGAAAATGAAATTACTGCTAAATCTTCCCATACTCA  550

seq1  CAAAAAATATTTTGTTTATCCTCTTCTGCTTGCTTGCTTCCTTCCTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAATATTTTGTTTATCCTCTTCTGCTTGCTTGCTTCCTTCCTTTTC  600

seq1  TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCTTT  650
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTCCTTCCTTCCTTCCTTCCTTCCTTACTTCCTTCCTTCCTTCCTTCTTT  650

seq1  C-TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  699
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  700

seq1  TTTCTTTCTTTCTTTCTATCT-TTCTGCC--TTTTTAAAAATTAGATATT  746
      ||||||||||||||||||||| |||||||  |||||||||||||||||||
seq2  TTTCTTTCTTTCTTTCTATCTGTTCTGCCTTTTTTTAAAAATTAGATATT  750

seq1  TTC-TTTATTTACATTT--CAAATGCTATCCCGAAAGTTCCCTATACCCT  793
      ||| |||||||||||||   ||||||||||||||||||||||||||||||
seq2  TTCTTTTATTTACATTTTCAAAATGCTATCCCGAAAGTTCCCTATACCCT  800

seq1  CCCCCCCGCCCT-GCTCCCCTACC  816
      |||||||||||| |||||||||||
seq2  CCCCCCCGCCCTGGCTCCCCTACC  824