BAC Information

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BAC

Clone NameB6Ng01-098H13
Chromosome1 (Build37)
Map Location 135,554,279 - 135,700,604
singlet/doubletdoublet
Overlap geneZc3h11a, LOC667118, Lax1, Atp2b4
Upstream geneNfasc, Lrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b, Plekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371, Snrpe
Downstream geneOptc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1, Myog, Ppfia4, LOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1, Klhl12, Rabif, 4931440L10Rik, Jarid1b, LOC100042418, Syt2, Ppp1r12b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098H13.bB6Ng01-098H13.g
ACCDH908555DH908556
length356857
definitionDH908555|Mus musculus domesticus DNA, BAC clone: B6Ng01-098H13, 5' end.DH908556|Mus musculus domesticus DNA, BAC clone: B6Ng01-098H13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,700,283 - 135,700,604)(135,554,279 - 135,555,133)
sequence
gctgaacttctctttttagggagaggtccgcggattcaggctgtggtctc
tctcctctcgaaccacctggaaaagaagtgggagaaaagggtggggcgtg
ggggcgtgggggcgtgggggaggatcctcttctctcagcccacaagcaca
tccaagagagaacactacttcaagagaagaacgacctatgcctcctatag
atatcagtcagcatcctggcctgccagccttgaatggaacagcagagcct
ctctgccttgcaacaaccccaccaccatgaagcccacagccttgcagccc
agagagcttttggatagggtctttctttttctcatcctagcaatttatga
tgaggt
gaattcttgtagaatctggcgggctttgacagaatggctaaaatgatggc
aggttttcctagcagccactaacatattctcaatacttttgtgctcacag
aaaaagtcctgaatcactatatttagacaatgcaggaagcatggcacatg
ggtaaagccaccacctttgattgcatgtaccacattagaagaattgtcag
aaacaatgaagctaggggtaaggaaattaggagaaagccacagaccaatc
tggtcatttaattcttgtaaaatgttagttatcaaacagtctttggctaa
acctgtaacacaaagtactgcccactttctaaaattgggagtcccaccat
tactgggagaagatgcagtttccaaagagacccagtgtacagtcacaatg
aaatagtcagtggaagggtcatgagtccatatgtcagcagtcaggtggat
cttttggctttgaacattctctaaagttaagaaaattttttctctaacag
aatcatataactgaggtacagctttggtgaaaaagtaagtctctgatggc
aatctatagtcaggagcgacaatctgtagaaacctttgaaaggctggggt
tgagaaatagttgtacggatgcagatcctccacaatcatctgaataactg
cctgacttatttgatttgcggctgcattttcacaatgtgtcgtcgtttct
ctctcttgtgcgtgcaccggattatcttggtcttgcaacaggaataggac
tctcagatctattttcaacctctaaacaagggggttcatctgttatcaga
gtcactgaggtcttcagctgttaatcttggcttgcctgatgacttctctc
caggcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_135700283_135700604
seq2: B6Ng01-098H13.b_34_356 (reverse)

seq1  ACCTCATCATAGATTGCTAGGATGTG-AAAAGCAAGACCCTCTCCTAAAG  49
      ||||||||||| |||||||||||| | ||||| |||||||| ||| ||||
seq2  ACCTCATCATAAATTGCTAGGATGAGAAAAAGAAAGACCCTATCCAAAAG  50

seq1  CTCTCTGGGCTGCAAGGCTGTGGGCTTCATGGTGGTGGGGTTGTTGCTAG  99
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTCTCTGGGCTGCAAGGCTGTGGGCTTCATGGTGGTGGGGTTGTTGCAAG  100

seq1  GCAGAGAGGCTCTGCTGTTCCATTCCAGGCTGGCAGGCCAGGATGCTGAC  149
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GCAGAGAGGCTCTGCTGTTCCATTCAAGGCTGGCAGGCCAGGATGCTGAC  150

seq1  TGATATCTATAGGAGGCATAGGTCGTTCTTCTCTTGAAGTAGTGTTCTCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATCTATAGGAGGCATAGGTCGTTCTTCTCTTGAAGTAGTGTTCTCT  200

seq1  CTTGGCTGTGCTTGTGGGCTGAGAGAAGAGGATCCTCCCCCACGCCCCCA  249
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGATGTGCTTGTGGGCTGAGAGAAGAGGATCCTCCCCCACGCCCCCA  250

seq1  CGCCCCCACGCCCCACCCTTTTCTCCCACTTCTTTTCCAGGTGGTTCTAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CGCCCCCACGCCCCACCCTTTTCTCCCACTTCTTTTCCAGGTGGTTCGAG  300

seq1  AGGAGAGAGACCACAGCCTGAAT  322
      |||||||||||||||||||||||
seq2  AGGAGAGAGACCACAGCCTGAAT  323

seq1: chr1_135554279_135555133
seq2: B6Ng01-098H13.g_70_926

seq1  GAATTCTTGTAGTATCTGGCGGGCTTTGACAGAATGGCTAAAATGATGGC  50
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTAGAATCTGGCGGGCTTTGACAGAATGGCTAAAATGATGGC  50

seq1  AGGTTTTCCTAGCAGCCACTAACATATTCTCAATACTTTTGTGCTCACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTCCTAGCAGCCACTAACATATTCTCAATACTTTTGTGCTCACAG  100

seq1  AAAAAGTCCTGAATCACTATATTTAGACAATGCAGGAAGCATGGCACATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTCCTGAATCACTATATTTAGACAATGCAGGAAGCATGGCACATG  150

seq1  GGTAAAGCCACCACCTTTGATTGCATGTACCACATTAGAAGAATTGTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAGCCACCACCTTTGATTGCATGTACCACATTAGAAGAATTGTCAG  200

seq1  AAACAATGAAGCTAGGGGTAAGGAAATTAGGAGAAAGCCACAGACCAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATGAAGCTAGGGGTAAGGAAATTAGGAGAAAGCCACAGACCAATC  250

seq1  TGGTCATTTAATTCTTGTAAAATGTTAGTTATCAAACAGTCTTTGGCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATTTAATTCTTGTAAAATGTTAGTTATCAAACAGTCTTTGGCTAA  300

seq1  ACCTGTAACACAAAGTACTGCCCACTTTCTAAAATTGGGAGTCCCACCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTAACACAAAGTACTGCCCACTTTCTAAAATTGGGAGTCCCACCAT  350

seq1  TACTGGGAGAAGATGCAGTTTCCAAAGAGACCCAGTGTACAGTCACAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGGAGAAGATGCAGTTTCCAAAGAGACCCAGTGTACAGTCACAATG  400

seq1  AAATAGTCAGTGGAAGGGTCATGAGTCCATATGTCAGCAGTCAGGTGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTCAGTGGAAGGGTCATGAGTCCATATGTCAGCAGTCAGGTGGAT  450

seq1  CTTTTGGCTTTGAACATTCTCTAAAGTTAAGAAAATTTTTTCTCTAACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGCTTTGAACATTCTCTAAAGTTAAGAAAATTTTTTCTCTAACAG  500

seq1  AATCATATAACTGAGGTACAGCTTTGGTGAAAAAGTAAGTCTCTGATGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATATAACTGAGGTACAGCTTTGGTGAAAAAGTAAGTCTCTGATGGC  550

seq1  AATCTATAGTCAGGAGCGACAATCTGTAGAAACCTTTGAAAGGCTGGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATAGTCAGGAGCGACAATCTGTAGAAACCTTTGAAAGGCTGGGGT  600

seq1  TGAGAAATAGTTGTACGGATGCAGATCCTCCACAATCATCTGAATAACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAATAGTTGTACGGATGCAGATCCTCCACAATCATCTGAATAACTG  650

seq1  CCTGACTTATTTGATTTGCGGCTGCATTTTCACAATGTGTCGTCGTTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTTATTTGATTTGCGGCTGCATTTTCACAATGTGTCGTCGTTTCT  700

seq1  CTCTCTTGTGCGTGCACCGGATTATCTTGGTC-TGCAACAGGAATAGGAC  749
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTCTCTTGTGCGTGCACCGGATTATCTTGGTCTTGCAACAGGAATAGGAC  750

seq1  TCTCAGATCTATTTTCAACCTCTAAACAAGGGGGTTCATCTG-TATCAGA  798
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCTCAGATCTATTTTCAACCTCTAAACAAGGGGGTTCATCTGTTATCAGA  800

seq1  GTCACTGAGGTCCTCAGCTGTTAAATCTTGGC-TGCCTGATGACTTCTCT  847
      |||||||||||| ||||||||| ||||||||| |||||||||||||||||
seq2  GTCACTGAGGTCTTCAGCTGTT-AATCTTGGCTTGCCTGATGACTTCTCT  849

seq1  CCAGGCAT  855
      ||||||||
seq2  CCAGGCAT  857