BAC Information

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BAC

Clone NameB6Ng01-098L02
Chromosome1 (Build37)
Map Location 144,412,696 - 144,508,674
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC639376
Downstream geneLOC545369, Cdc73, B3galt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098L02.bB6Ng01-098L02.g
ACCDH908712DH908713
length1,169738
definitionDH908712|Mus musculus domesticus DNA, BAC clone: B6Ng01-098L02, 5' end.DH908713|Mus musculus domesticus DNA, BAC clone: B6Ng01-098L02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,412,696 - 144,413,860)(144,507,937 - 144,508,674)
sequence
gaattccattcaaatcatttttctcaaaaaaaggttcacatatttattca
gaatttgtagctatcttaatcaaacatattataagacacagacactgatt
tttaggtatcaactggcagtgagcaattaaaagtccatcattttaaaagg
tctatttcaattttaattcaatttcatgtgtatgtctgtgtgtgctatgc
acaaatcagggcaggtgcatgtggtagccaaaagatggtgttgaaaagag
ctatatacatgtggttgtaaagtatacaatttgggtgttagcaaaggaaa
tctaatcctctggaagagaagcaagtcctcttaaccactaaactactttc
ccaaaatgcagacaaatccgttttatagagcaagggagctttcgactgca
tctctaatagtaaaagattgatgacttctgttaaaattcacagaaagttt
acagaaaataggagtagacaaagaattcacaattatctttatcagcctaa
accaagaataacatttaaaagaaaaagaatatttttgtgtatttttctcc
aaggtctgtcataaacattgaacaaagaaaatctagctctcagtgaatta
gggaaatatttgattagagataatgcaaacctttctataatcctgacaat
ccagatgctgacagatgaggataataatgagtttaaggccagattgtata
acacagtaagttgtaggacaagtgagctagtgagatttcctgtgaaataa
gtatgagaaaaataaatgagaaaaatgaatcatatatttctaaaaagcag
ctgtgtattaataagttaattttatttatcatgaacaataataattcatt
ctatctatgattgtatctattttatttcatttataatatgaaatttcata
ggaaggaaatgttgcttttacacatgtaaaacagagtaatgggaaggtaa
catacaccagaaatctgtccttcatcccagagctctaatagacaaatgag
aattgcatgcagagtccttgtaaccttctggaagataaatgtatattgtt
aaccaactgaaggtccaccctctttcctctaatattggccgaggaccaat
ttttagcctattccagatcttttccctccataagccctctccaatcttcc
agtctctaggttcagagga
gaattcactcttgcacctgcgtacaaggcttgtttactagttaggcacag
cggaggcccgcgccatcttataatggcgattgctcgcggcacatactggc
tcttcacactttttttcattctttatctcaccctttctttcttctcatct
tcccctttctcctaatatcattttatttatgttctttcacatttgggtat
aaaaatattatgcttaagttattattttttaattttttcttagccctgaa
tgagcccttaaacccttatatttttggaatcaccttatattattagaata
tcgattgcattctcttcttctgagtatttcttctgctatttgttatgaaa
tacacttatattatcattgctattttatcccagttagagacaagatacat
ttgtgatagtactaactgttcttttttttatgttaaaacatggttctctc
tctctctctctctctctctctctctctctctttctctctctctctctcca
tgtagtgacaccatggacaaatagaatccacagttcagtaaacatacaga
tgtggtagacagagaaatagcattaaaatactaaaaaaaaaaaaaaacaa
aacaaaaaaacaaacaaactaagatccgtttttactgatactgatggaga
atctctttgttttaagtggcattcatgctccagtcctgagggacaggatg
tatggagaagaattatatgtcagcaagactcattaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_144412696_144413860
seq2: B6Ng01-098L02.b_48_1216

seq1  GAATTCCATTCAAATCATTTTTCTCAAAAAAAGGTTCACATATTTATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTCAAATCATTTTTCTCAAAAAAAGGTTCACATATTTATTCA  50

seq1  GAATTTGTAGCTATCTTAATCAAACATATTATAAGACACAGACACTGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGTAGCTATCTTAATCAAACATATTATAAGACACAGACACTGATT  100

seq1  TTTAGGTATCAACTGGCAGTGAGCAATTAAAAGTCCATCATTTTAAAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGTATCAACTGGCAGTGAGCAATTAAAAGTCCATCATTTTAAAAGG  150

seq1  TCTATTTCAATTTTAATTCAATTTCATGTGTATGTCTGTGTGTGCTATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTCAATTTTAATTCAATTTCATGTGTATGTCTGTGTGTGCTATGC  200

seq1  ACAAATCAGGGCAGGTGCATGTGGTAGCCAAAAGATGGTGTTGAAAAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCAGGGCAGGTGCATGTGGTAGCCAAAAGATGGTGTTGAAAAGAG  250

seq1  CTATATACATGTGGTTGTAAAGTATACAATTTGGGTGTTAGCAAAGGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATACATGTGGTTGTAAAGTATACAATTTGGGTGTTAGCAAAGGAAA  300

seq1  TCTAATCCTCTGGAAGAGAAGCAAGTCCTCTTAACCACTAAACTACTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATCCTCTGGAAGAGAAGCAAGTCCTCTTAACCACTAAACTACTTTC  350

seq1  CCAAAATGCAGACAAATCCGTTTTATAGAGCAAGGGAGCTTTCGACTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATGCAGACAAATCCGTTTTATAGAGCAAGGGAGCTTTCGACTGCA  400

seq1  TCTCTAATAGTAAAAGATTGATGACTTCTGTTAAAATTCACAGAAAGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAATAGTAAAAGATTGATGACTTCTGTTAAAATTCACAGAAAGTTT  450

seq1  ACAGAAAATAGGAGTAGACAAAGAATTCACAATTATCTTTATCAGCCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAATAGGAGTAGACAAAGAATTCACAATTATCTTTATCAGCCTAA  500

seq1  ACCAAGAATAACATTTAAAAGAAAAAGAATATTTTTGTGTATTTTTCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGAATAACATTTAAAAGAAAAAGAATATTTTTGTGTATTTTTCTCC  550

seq1  AAGGTCTGTCATAAACATTGAACAAAGAAAATCTAGCTCTCAGTGAATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCTGTCATAAACATTGAACAAAGAAAATCTAGCTCTCAGTGAATTA  600

seq1  GGGAAATATTTGATTAGAGATAATGCAAACCTTTCTATAATCCTGACAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATATTTGATTAGAGATAATGCAAACCTTTCTATAATCCTGACAAT  650

seq1  CCAGATGCTGACAGATGAGGATAATAATGAGTTTAAGGCCAGATTGTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGCTGACAGATGAGGATAATAATGAGTTTAAGGCCAGATTGTATA  700

seq1  ACACAGTAAGTTGTAGGACAAGTGAGCTAGTGAGATTTCCTGTGAAATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTAAGTTGTAGGACAAGTGAGCTAGTGAGATTTCCTGTGAAATAA  750

seq1  GTATGAGAAAAATAAATGAGAAAAATGAATCATATATTTCTAAAAAGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAGAAAAATAAATGAGAAAAATGAATCATATATTTCTAAAAAGCAG  800

seq1  CTGTGTATTAATAAGTTAATTTTATTTATCATGAACAATAATAATTCATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTATTAATAAGTTAATTTTATTTATCATGAACAATAATAATTCATT  850

seq1  CTATCTATGATTGTATCTATTTTAATTCATTTATAATATGAAATTTCATA  900
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTATCTATGATTGTATCTATTTTATTTCATTTATAATATGAAATTTCATA  900

seq1  GGAAGGAAATGTTGCTTTTACACATGTAAAACAGAGTAATGGGAAGGTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAAATGTTGCTTTTACACATGTAAAACAGAGTAATGGGAAGGTAA  950

seq1  CATACACCAGAAATCTGTCC-TCATCCCAGAGCTCTAATAAGACAAATGA  999
      |||||||||||||||||||| |||||||||||||||||| ||||||||||
seq2  CATACACCAGAAATCTGTCCTTCATCCCAGAGCTCTAAT-AGACAAATGA  999

seq1  GAATTGCATGCAGAGTCC-TGTAACTTCTTGGAAGAATTAATGTATAATT  1048
      |||||||||||||||||| |||||| |  |||||| || ||||||| |||
seq2  GAATTGCATGCAGAGTCCTTGTAACCTTCTGGAAG-ATAAATGTAT-ATT  1047

seq1  GTTAA-CAACTG-AGGTCCA-CCTCTTTTCTCTATTATTTTTCTGAGGAC  1095
      ||||| |||||| ||||||| ||||||| ||||| || ||  | ||||||
seq2  GTTAACCAACTGAAGGTCCACCCTCTTTCCTCTAATA-TTGGCCGAGGAC  1096

seq1  C-ATTTTTAG-CTATTCCAGATC-TTTCCCTCCATAAGCCCTC-CCAATC  1141
      | |||||||| |||||||||||| ||||||||||||||||||| ||||||
seq2  CAATTTTTAGCCTATTCCAGATCTTTTCCCTCCATAAGCCCTCTCCAATC  1146

seq1  TTTCAGTCTCTAGTTTCAGGAGGA  1165
      || |||||||||| |||| |||||
seq2  TTCCAGTCTCTAGGTTCA-GAGGA  1169

seq1: chr1_144507937_144508674
seq2: B6Ng01-098L02.g_69_806 (reverse)

seq1  TTTTAATGAGTCTTGCTGACATAATATTACTTCT-CATACATCCTGTCCC  49
      |||||||||||||||||||||| ||| | ||||| |||||||||||||||
seq2  TTTTAATGAGTCTTGCTGACAT-ATAATTCTTCTCCATACATCCTGTCCC  49

seq1  TCAGGACTGGAGCATGAATGCCACTTAAAACAAAGAGATTCTCCATCAGT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGACTGGAGCATGAATGCCACTTAAAACAAAGAGATTCTCCATCAGT  99

seq1  ATCAGTAAAAACGGATCTTAGTTTGTTTGTTTTTTTGTTTTGTTTTTTTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTAAAAACGGATCTTAGTTTGTTTGTTTTTTTGTTTTGTTTTTTTT  149

seq1  TTTTTTTAGTATTTTAATGCTATTTCTCTGTCTACCACATCTGTATGTTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAGTATTTTAATGCTATTTCTCTGTCTACCACATCTGTATGTTT  199

seq1  ACTGAACTGTGGATTCTATTTGTCCATGGTGTCACTACATGGAGAGAGAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACTGTGGATTCTATTTGTCCATGGTGTCACTACATGGAGAGAGAG  249

seq1  AGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACCAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACCAT  299

seq1  GTTTTAACATAAAAAAAAGAACAGTTAGTACTATCACAAATGTATCTTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAACATAAAAAAAAGAACAGTTAGTACTATCACAAATGTATCTTGT  349

seq1  CTCTAACTGGGATAAAATAGCAATGATAATATAAGTGTATTTCATAACAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAACTGGGATAAAATAGCAATGATAATATAAGTGTATTTCATAACAA  399

seq1  ATAGCAGAAGAAATACTCAGAAGAAGAGAATGCAATCGATATTCTAATAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAGAAGAAATACTCAGAAGAAGAGAATGCAATCGATATTCTAATAA  449

seq1  TATAAGGTGATTCCAAAAATATAAGGGTTTAAGGGCTCATTCAGGGCTAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGGTGATTCCAAAAATATAAGGGTTTAAGGGCTCATTCAGGGCTAA  499

seq1  GAAAAAATTAAAAAATAATAACTTAAGCATAATATTTTTATACCCAAATG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAATTAAAAAATAATAACTTAAGCATAATATTTTTATACCCAAATG  549

seq1  TGAAAGAACATAAATAAAATGATATTAGGAGAAAGGGGAAGATGAGAAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAACATAAATAAAATGATATTAGGAGAAAGGGGAAGATGAGAAGA  599

seq1  AAGAAAGGGTGAGATAAAGAATGAAAAAAAGTGTGAAGAGCCAGTATGTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGGGTGAGATAAAGAATGAAAAAAAGTGTGAAGAGCCAGTATGTG  649

seq1  CCGCGAGCAATCGCCATTATAAGATGGCGCGGGCCTCCGCTGTGCCTAAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCGAGCAATCGCCATTATAAGATGGCGCGGGCCTCCGCTGTGCCTAAC  699

seq1  TAGTAAACAAGCCTTGTACGCAGGTGCAAGAGTGAATTC  738
      |||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAACAAGCCTTGTACGCAGGTGCAAGAGTGAATTC  738