BAC Information

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BAC

Clone NameB6Ng01-098P12
Chromosome1 (Build37)
Map Location 101,403,390 - 101,584,920
singlet/doubletdoublet
Overlap genenone
Upstream geneSlco6d1, EG666182
Downstream geneC230078M14Rik, LOC633295, EG666200
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098P12.bB6Ng01-098P12.g
ACCDH908897DH908898
length738703
definitionDH908897|Mus musculus domesticus DNA, BAC clone: B6Ng01-098P12, 5' end.DH908898|Mus musculus domesticus DNA, BAC clone: B6Ng01-098P12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,403,390 - 101,404,127)(101,584,219 - 101,584,920)
sequence
gaattcaccctttatttctttccttttctctctggttaacaaagaatgaa
taagctctaatcttctcacatggtcagcaagaggatatcagcagggggca
aagaatataagagttaaaagagttcaaagtatctctgtattctagcaagc
cccagataatgaacttttatgccatcagtagtattcactccataaaccat
ccatctctgtcatctgaaccctatctgctatcaacatgaccccaataaac
aataatattttcccattttgctgccctactcaaagaaatcaggctgttga
catatttgctttattctacatgtagacatccagttagatcagcatcattt
cttgaagaccctttcttttatatacttgtatggtttggctattttgtcaa
aaataagtagtatgaaggtgtgtgggtttatttctgagatttgatctgat
tcccttgagcaatatagctcattaaataccaatatcatgcaatgtttatt
cggtatgaaatataatggtctgtcatatagcttgaaaccagggatggtga
taactatcaaagatgttttattgtatagagatgtttttgctatcttgggt
ttttttaatattcaaggtgagaattgtttgttcaaagatcataaagaatt
gtaataaaatattgatgcaatttgcatcatctctgtaggttgattttggt
aagatgcctcctccacctcctcctcctcctcctccacc
gaattctctgagctctgactgtaccacagagctcttttgattgaaggtga
tggatatactttctcaaaggttcttcatctgaaagaagaatgtggtagaa
aacatatccattttggttttgatcaagaaagatagtgggaaagggcatgt
cccctttacattttaaaggtacataagtattgttgtggaaatagtacaga
aatcacaggaaacagttatgtctttacatttagaaaagccctatgaatca
gactgagagatgttcagagttccacctttcttcttctttctgaagaaaat
atatgggtaggagagatgttcagcacctaagagcatgactgctcctacag
aagacccaaggtcagttcccaacaaacatgttcaatagcacataactgcc
tgcctgtatctagctacaggcactacatcaaattttcagtccgctagaga
tacatccatgtacatgtgtgtttgttcacagacacataaatgtaaacaaa
actagtcttttaaaagtaataatgattttgtaagtagtgcataccagagt
atagggaaactcctccacaatttacaataaacgttaaaaatatgtacctg
ccaaaataaagattaaaaaaattatcaggctgataagtaatgcataaaca
tacatacatattttacaggtttctacacttgtgtgtgtgtggggggaagg
gtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_101403390_101404127
seq2: B6Ng01-098P12.b_50_787

seq1  GAATTCACCCTTTATTTCTTTCCTTTTCTCTCTGGTTAACAAAGAATGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCTTTATTTCTTTCCTTTTCTCTCTGGTTAACAAAGAATGAA  50

seq1  TAAGCTCTAATCTTCTCACATGGTCAGCAAGAGGATATCAGCAGGGGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTCTAATCTTCTCACATGGTCAGCAAGAGGATATCAGCAGGGGGCA  100

seq1  AAGAATATAAGAGTTAAAAGAGTTCAAAGTATCTCTGTATTCTAGCAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATATAAGAGTTAAAAGAGTTCAAAGTATCTCTGTATTCTAGCAAGC  150

seq1  CCCAGATAATGAACTTTTATGCCATCAGTAGTATTCACTCCATAAACCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATAATGAACTTTTATGCCATCAGTAGTATTCACTCCATAAACCAT  200

seq1  CCATCTCTGTCATCTGAACCCTATCTGCTATCAACATGACCCCAATAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCTGTCATCTGAACCCTATCTGCTATCAACATGACCCCAATAAAC  250

seq1  AATAATATTTTCCCATTTTGCTGCCCTACTCAAAGAAATCAGGCTGTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATATTTTCCCATTTTGCTGCCCTACTCAAAGAAATCAGGCTGTTGA  300

seq1  CATATTTGCTTTATTCTACATGTAGACATCCAGTTAGATCAGCATCATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTGCTTTATTCTACATGTAGACATCCAGTTAGATCAGCATCATTT  350

seq1  CTTGAAGACCCTTTCTTTTATATACTTGTATGGTTTGGCTATTTTGTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGACCCTTTCTTTTATATACTTGTATGGTTTGGCTATTTTGTCAA  400

seq1  AAATAAGTAGTATGAAGGTGTGTGGGTTTATTTCTGAGATTTGATCTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGTAGTATGAAGGTGTGTGGGTTTATTTCTGAGATTTGATCTGAT  450

seq1  TCCCTTGAGCAATATAGCTCATTAAATACCAATATCATGCAATGTTTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGAGCAATATAGCTCATTAAATACCAATATCATGCAATGTTTATT  500

seq1  CGGTATGAAATATAATGGTCTGTCATATAGCTTGAAACCAGGGATGGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTATGAAATATAATGGTCTGTCATATAGCTTGAAACCAGGGATGGTGA  550

seq1  TAACTATCAAAGATGTTTTATTGTATAGAGATGTTTTTGCTATCTTGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTATCAAAGATGTTTTATTGTATAGAGATGTTTTTGCTATCTTGGGT  600

seq1  TTTTTTAATATTCAAGGTGAGAATTGTTTGTTCAAAGATCATAAAGAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAATATTCAAGGTGAGAATTGTTTGTTCAAAGATCATAAAGAATT  650

seq1  GTAATAAAATATTGATGCAATTTGCATCATCTCTGTAGGTTGATTTTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAAAATATTGATGCAATTTGCATCATCTCTGTAGGTTGATTTTGGT  700

seq1  AAGATGCCTCCTCCACCTCCTCCTCCTCCTCCTCCTCC  738
      ||||||||||||||||||||||||||||||||||| ||
seq2  AAGATGCCTCCTCCACCTCCTCCTCCTCCTCCTCCACC  738

seq1: chr1_101584219_101584920
seq2: B6Ng01-098P12.g_69_771 (reverse)

seq1  CACCCCTCCCCCCACACACACACAAGTGTAG-AACCTGTAAAATATGTAT  49
      ||||| ||||||||||||||||||||||||| ||||||||||||||||||
seq2  CACCCTTCCCCCCACACACACACAAGTGTAGAAACCTGTAAAATATGTAT  50

seq1  GTATGTTTATGCATTACTTATCAGCCTGATAATTTTTTTAATCTTTATTT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTTTATGCATTACTTATCAGCCTGATAATTTTTTTAATCTTTATTT  100

seq1  TGGCAGGTACATATTTTTAACGTTTATTGTAAATTGTGGAGGAGTTTCCC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGTACATATTTTTAACGTTTATTGTAAATTGTGGAGGAGTTTCCC  150

seq1  TATACTCTGGTATGCACTACTTACAAAATCATTATTACTTTTAAAAGACT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTCTGGTATGCACTACTTACAAAATCATTATTACTTTTAAAAGACT  200

seq1  AGTTTTGTTTACATTTATGTGTCTGTGAACAAACACACATGTACATGGAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGTTTACATTTATGTGTCTGTGAACAAACACACATGTACATGGAT  250

seq1  GTATCTCTAGCGGACTGAAAATTTGATGTAGTGCCTGTAGCTAGATACAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTCTAGCGGACTGAAAATTTGATGTAGTGCCTGTAGCTAGATACAG  300

seq1  GCAGGCAGTTATGTGCTATTGAACATGTTTGTTGGGAACTGACCTTGGGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCAGTTATGTGCTATTGAACATGTTTGTTGGGAACTGACCTTGGGT  350

seq1  CTTCTGTAGGAGCAGTCATGCTCTTAGGTGCTGAACATCTCTCCTACCCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTAGGAGCAGTCATGCTCTTAGGTGCTGAACATCTCTCCTACCCA  400

seq1  TATATTTTCTTCAGAAAGAAGAAGAAAGGTGGAACTCTGAACATCTCTCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTCTTCAGAAAGAAGAAGAAAGGTGGAACTCTGAACATCTCTCA  450

seq1  GTCTGATTCATAGGGCTTTTCTAAATGTAAAGACATAACTGTTTCCTGTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGATTCATAGGGCTTTTCTAAATGTAAAGACATAACTGTTTCCTGTG  500

seq1  ATTTCTGTACTATTTCCACAACAATACTTATGTACCTTTAAAATGTAAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGTACTATTTCCACAACAATACTTATGTACCTTTAAAATGTAAAG  550

seq1  GGGACATGCCCTTTCCCACTATCTTTCTTGATCAAAACCAAAATGGATAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACATGCCCTTTCCCACTATCTTTCTTGATCAAAACCAAAATGGATAT  600

seq1  GTTTTCTACCACATTCTTCTTTCAGATGAAGAACCTTTGAGAAAGTATAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTACCACATTCTTCTTTCAGATGAAGAACCTTTGAGAAAGTATAT  650

seq1  CCATCACCTTCAATCAAAAGAGCTCTGTGGTACAGTCAGAGCTCAGAGAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCACCTTCAATCAAAAGAGCTCTGTGGTACAGTCAGAGCTCAGAGAA  700

seq1  TTC  702
      |||
seq2  TTC  703