BAC Information

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BAC

Clone NameB6Ng01-099G06
Chromosome1 (Build37)
Map Location 106,867,731 - 107,014,375
singlet/doubletdoublet
Overlap geneCdh20
Upstream geneLOC383546, LOC100041134
Downstream geneRnf152, LOC100041985, Pign, LOC666249, 2310035C23Rik, LOC100042023, Tnfrsf11a, EG635504, Zcchc2, EG435634
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099G06.bB6Ng01-099G06.g
ACCDH909197DH909198
length1,0461,216
definitionDH909197|Mus musculus domesticus DNA, BAC clone: B6Ng01-099G06, 5' end.DH909198|Mus musculus domesticus DNA, BAC clone: B6Ng01-099G06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,867,731 - 106,868,381)(107,013,141 - 107,014,375)
sequence
gaattctctataagtcagaaattgaatcattatatgtttatgactgggaa
ggcctagagcaaagaactcctttctaacagcaaaaccagttctaagaagc
aggaccacaaaactatagctttgttcttttcaagtttcagattagcaaaa
ataacaaaaacaaacaaaaaaacaaaaacaaaaacaaacaactgtattag
aactacttttgctgcatccctaaagctctggtaagttctgtttccatttc
cctctctgatttcaataacccaaagattattaaagggtatattgtttcat
tttaatttctagtttctacaggttctcttgctattgatttctaggttttt
tttattgcattatgatctggtagcagaaattactttaggctcatttttgt
atttgttagaacattttttgtaacttaactttatttttgagaaagtttca
tatgctgctaaaagagtttatcttatacacatgttgggtgaaatattatg
tagatatttagacatgccatttgatctgtggggaggctgaactctaaaat
ttttagaatgtttaaaatctagatgactcatagctgctgtattaatgtca
cccaccattattatatctgcacctttctgtcctcttatgcccaataatgc
ctgttttgtgaaattatgtgcaccaatattcaaggcatatatactaacaa
tcattttttgaggcagaatttcactgtgtagccctggcttggcctatacc
ttgctaggtaaaaaagagtgccctcaaactcaaagaaatctgtctgcctc
tgtttcatccatgctggcaaagggcattcactaccatgcctggctacaaa
cattgcatcttcttaagtgattgctctttttcctaatttgtgttacccta
tttacctcttctaattagaaaagtatactttcactactcatttgcttcca
gatttcacttgttagaggttgtaattccatccttcattttcagccatgtg
cctttcatatgaaatgagtttcttgcaaaaatagtcatgtctcatg
gaattctttcttgtctcaaacaacaacagaagcaacaagaaaataagaaa
atagacactccaaaccaaaaatatctatacctagcaagactcttgaagag
caagcatgggaggagaaagtctagggcagttcaccccatcctgcagtaag
taccttccattgcgcagtctcacccctcccatacctcactgggaagcctt
ctccttaccccttctttatcctcactatgaattattggtagcttttactt
gccatatttttgctatcaggtaattttgttctatcatttattttaatgtg
acaaaactcttggcttggcctgtttttaatttccaaatattagtggaagt
cttcacgggactcttgttttcttttctaaactgatctcttttcttaaaaa
aaaaaaaagtctcccaaggacagccaagaaatgaaaggaagaaagctgta
ttacctgctgcttgttgggagatcttgggaaataattttcaaagcaatat
ggtctgagaataaacaggcctcaggagtttatgtgggggaaactgcacca
tttatatctgaaagtattttggaggtgggcacattactaggcatgctcaa
tttcaaatgtggtctacttaggtcaaggtcatcgctcaaggaggaaaaag
agcagaaaggaatacttctgaacatgcgtaattcacgtcagaaatacagt
gggcatcaatagttcttagagtgtttatcttctttcccaaaaaagattca
tctacaacaaaatatcactcttaaagatgcattactgtaagttttgccac
tacggggcccaccttaacaatctagcattcccaaaagacaaagcagggcg
attagaactatgaagcagactaaactatatagtggagatcctgtcacaca
cacacacacacacacacacacacacacacacgcaccccaaaattctcatg
tgattttttccccttaagggtcttcaggtttgcaggaagaatttgtcaca
ttgacatccttttaaagacagtctctgtgtgagcctagaagtggtatgtg
atcagctggctcaaattaacgaatccctgtcttatgttccaagggccagg
attaaggcatggcccccaccctacctggctcacatcaatttctttaagca
gttcctattggtgattagcgaacaaaaatattggctgatgttttaagcca
ctttaggtgagccata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_106867731_106868381
seq2: B6Ng01-099G06.b_47_697

seq1  GAATTCTCTATAAGTCAGAAATTGAATCATTATATGTTTATGACTGGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTATAAGTCAGAAATTGAATCATTATATGTTTATGACTGGGAA  50

seq1  GGCCTAGAGCAAAGAACTCCTTTCTAACAGCAAAACCAGTTCTAAGAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAGAGCAAAGAACTCCTTTCTAACAGCAAAACCAGTTCTAAGAAGC  100

seq1  AGGACCACAAAACTATAGCTTTGTTCTTTTCAAGTTTCAGATTAGCAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCACAAAACTATAGCTTTGTTCTTTTCAAGTTTCAGATTAGCAAAA  150

seq1  ATAACAAAAACAAACAAAAAAACAAAAACAAAAACAAACAACTGTATTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAAAAACAAACAAAAAAACAAAAACAAAAACAAACAACTGTATTAG  200

seq1  AACTACTTTTGCTGCATCCCTAAAGCTCTGGTAAGTTCTGTTTCCATTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACTTTTGCTGCATCCCTAAAGCTCTGGTAAGTTCTGTTTCCATTTC  250

seq1  CCTCTCTGATTTCAATAACCCAAAGATTATTAAAGGGTATATTGTTTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTGATTTCAATAACCCAAAGATTATTAAAGGGTATATTGTTTCAT  300

seq1  TTTAATTTCTAGTTTCTACAGGTTCTCTTGCTATTGATTTCTAGGTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTCTAGTTTCTACAGGTTCTCTTGCTATTGATTTCTAGGTTTTT  350

seq1  TTTATTGCATTATGATCTGGTAGCAGAAATTACTTTAGGCTCATTTTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGCATTATGATCTGGTAGCAGAAATTACTTTAGGCTCATTTTTGT  400

seq1  ATTTGTTAGAACATTTTTTGTAACTTAACTTTATTTTTGAGAAAGTTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTAGAACATTTTTTGTAACTTAACTTTATTTTTGAGAAAGTTTCA  450

seq1  TATGCTGCTAAAAGAGTTTATCTTATACACATGTTGGGTGAAATATTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGCTAAAAGAGTTTATCTTATACACATGTTGGGTGAAATATTATG  500

seq1  TAGATATTTAGACATGCCATTTGATCTGTGGGGAGGCTGAACTCTAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATTTAGACATGCCATTTGATCTGTGGGGAGGCTGAACTCTAAAAT  550

seq1  TTTTAGAATGTTTAAAATCTAGATGACTCATAGCTGCTGTATTAATGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAATGTTTAAAATCTAGATGACTCATAGCTGCTGTATTAATGTCA  600

seq1  CCCACCATTATTATATCTGCACCTTTCTGTCCTCTTATGCCCAATAATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCATTATTATATCTGCACCTTTCTGTCCTCTTATGCCCAATAATGC  650

seq1  C  651
      |
seq2  C  651

seq1: chr1_107013141_107014375
seq2: B6Ng01-099G06.g_68_1283 (reverse)

seq1  TATGTGCTCTACCTAAAGTATGGCTTAAAGCCATCAGCATATTATTTCTG  50
      |||| |||| ||||||||  |||||||||  |||||||  | ||||| ||
seq2  TATG-GCTC-ACCTAAAG--TGGCTTAAA-ACATCAGC-CAATATTTTTG  44

seq1  TTCGGCTAAAATCACCAATAAGAACCTGCTTAAGAATATTGATGTGAGCC  100
      ||| |||  ||||||||||| ||| ||||||||  | |||||||||||||
seq2  TTC-GCT--AATCACCAATAGGAA-CTGCTTAAAGAAATTGATGTGAGCC  90

seq1  AGGTGTGGTGTGGTGCATGCCTTTAATCCTAGCCCTTGGGACATAAAGAC  150
      ||||  |||| ||  |||||| |||||||| |||||||| |||| |||||
seq2  AGGTAGGGTGGGGGCCATGCC-TTAATCCTGGCCCTTGGAACAT-AAGAC  138

seq1  AGGGGATCGGTAAATTTGAGCCAGGCTGATCTACATAGCAACTTCTAGGG  200
      | |||||  || ||||||||||| ||||||| ||||| | ||||||| ||
seq2  A-GGGATTCGTTAATTTGAGCCA-GCTGATC-ACATA-CCACTTCTA-GG  183

seq1  CTACACACAGAGACTGTCTTTTAAAAAGGATGTCAATGTTGACAAATTCT  250
      || ||||||||||||||||||  ||||||||||||||| |||||||||||
seq2  CT-CACACAGAGACTGTCTTT--AAAAGGATGTCAATG-TGACAAATTCT  229

seq1  TCCTGCAAACCTGAAGACCCTAAGGGGGAAAAAATCACATGAGAATTTTT  300
      ||||||||||||||||||||| | ||||||||||||||||||||| ||||
seq2  TCCTGCAAACCTGAAGACCCTTAAGGGGAAAAAATCACATGAGAA-TTTT  278

seq1  GGGGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGACAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGACAGGA  328

seq1  TCT-CACTATATAGTTTAGTCTGCTTCATAGTTCTAATCGCCCTGCTTTG  399
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACTATATAGTTTAGTCTGCTTCATAGTTCTAATCGCCCTGCTTTG  378

seq1  TCTTTT-GGAATGCTAGATTGTTAAGGTGGGCCCCGTAGTGGC-AAACTT  447
      |||||| |||||||||||||||||||||||||||||||||||| ||||||
seq2  TCTTTTGGGAATGCTAGATTGTTAAGGTGGGCCCCGTAGTGGCAAAACTT  428

seq1  ACAGTAATGCATCTTTAAGAGTGATATTTTGTTGTAGATGAATCTTTTTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAATGCATCTTTAAGAGTGATATTTTGTTGTAGATGAATCTTTTTT  478

seq1  GGGAAAGAAGATAAACACTCTAAGAACTATTGATGCCCACTGTATTTCTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGAAGATAAACACTCTAAGAACTATTGATGCCCACTGTATTTCTG  528

seq1  ACGTGAATTACGCATGTTCAGAAGTATTCCTTTCTGCTCTTTTTCCTCCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGAATTACGCATGTTCAGAAGTATTCCTTTCTGCTCTTTTTCCTCCT  578

seq1  TGAGCGATGACCTTGACCTAAGTAGACCACATTTGAAATTGAGCATGCCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCGATGACCTTGACCTAAGTAGACCACATTTGAAATTGAGCATGCCT  628

seq1  AGTAATGTGCCCACCTCCAAAATACTTTCAGATATAAATGGTGCAGTTTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATGTGCCCACCTCCAAAATACTTTCAGATATAAATGGTGCAGTTTC  678

seq1  CCCCACATAAACTCCTGAGGCCTGTTTATTCTCAGACCATATTGCTTTGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACATAAACTCCTGAGGCCTGTTTATTCTCAGACCATATTGCTTTGA  728

seq1  AAATTATTTCCCAAGATCTCCCAACAAGCAGCAGGTAATACAGCTTTCTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATTTCCCAAGATCTCCCAACAAGCAGCAGGTAATACAGCTTTCTT  778

seq1  CCTTTCATTTCTTGGCTGTCCTTGGGAGACTTTTTTTTTTTTTAAGAAAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCATTTCTTGGCTGTCCTTGGGAGACTTTTTTTTTTTTTAAGAAAA  828

seq1  GAGATCAGTTTAGAAAAGAAAACAAGAGTCCCGTGAAGACTTCCACTAAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCAGTTTAGAAAAGAAAACAAGAGTCCCGTGAAGACTTCCACTAAT  878

seq1  ATTTGGAAATTAAAAACAGGCCAAGCCAAGAGTTTTGTCACATTAAAATA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAAATTAAAAACAGGCCAAGCCAAGAGTTTTGTCACATTAAAATA  928

seq1  AATGATAGAACAAAATTACCTGATAGCAAAAATATGGCAAGTAAAAGCTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATAGAACAAAATTACCTGATAGCAAAAATATGGCAAGTAAAAGCTA  978

seq1  CCAATAATTCATAGTGAGGATAAAGAAGGGGTAAGGAGAAGGCTTCCCAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAATTCATAGTGAGGATAAAGAAGGGGTAAGGAGAAGGCTTCCCAG  1028

seq1  TGAGGTATGGGAGGGGTGAGACTGCGCAATGGAAGGTACTTACTGCAGGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTATGGGAGGGGTGAGACTGCGCAATGGAAGGTACTTACTGCAGGA  1078

seq1  TGGGGTGAACTGCCCTAGACTTTCTCCTCCCATGCTTGCTCTTCAAGAGT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGAACTGCCCTAGACTTTCTCCTCCCATGCTTGCTCTTCAAGAGT  1128

seq1  CTTGCTAGGTATAGATATTTTTGGTTTGGAGTGTCTATTTTCTTATTTTC  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTAGGTATAGATATTTTTGGTTTGGAGTGTCTATTTTCTTATTTTC  1178

seq1  TTGTTGCTTCTGTTGTTGTTTGAGACAAGAAAGAATTC  1235
      ||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGCTTCTGTTGTTGTTTGAGACAAGAAAGAATTC  1216