BAC Information

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BAC

Clone NameB6Ng01-099H05
Chromosome1 (Build37)
Map Location 26,004,615 - 26,110,567
singlet/doubletdoublet
Overlap genenone
Upstream gene4930472D16Rik, LOC669171, Bai3, LOC665595
Downstream gene4931408C20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099H05.bB6Ng01-099H05.g
ACCDH909238DH909239
length1,086834
definitionDH909238|Mus musculus domesticus DNA, BAC clone: B6Ng01-099H05, 5' end.DH909239|Mus musculus domesticus DNA, BAC clone: B6Ng01-099H05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,109,559 - 26,110,567)(26,004,615 - 26,005,450)
sequence
gaattcctttctgtatcttcacacctgcattatctgtaatcttgattagc
gttatagaataactgataggactgatgcacgccaactccctgacgagcta
ctcactaccatttcatgaatctctgcctgtttctgtttctcataattgag
ggcatctatgaaagtccggtcctgaaaaaaaactcagcataggggagcta
atcaagggctacctccatctggcctggggaccaaatagtcactcccaatg
agtcaacatcagttttcaagaacccccagcaacgattgtggaaaggcccc
ataaccctcaccattcccaaagacacccataacccttaagacaaggccta
acaatcaagataaaaagtcgcctaacccacttggaataccctctgatgtc
ctttaaattgaacctgagagggcactttcgggtcttcatttacatgaatg
gtagacacatgcctgcaggctttctgacctatttaagctctttgcttttg
cttactatttgagtctgggttaccgctccctgcggattccaagaccctta
ctgaactatatctaaggcattcctacttttaagcatatcatttgaagcat
actttatttgacatactggtatgcttgattttacactgatctctcatcta
gcggtgattgtggcactatggtttgaataaaatggtatgtcaagaatttt
aaagcagaattaataatactaacccctggcaatgtcaatatgcattcagt
cctccttacacacacacaattgtacatattgatcaaatagcaattactag
tgatgactttattatgctttataacactcttcctctcttgagtctcacat
taatttgtgatggagtcacagattttgtgtacactctccagtaacttagg
agagcaggttaaaaggttacatctgtcttgctgcttttgaatgaatggtt
atactatagaggcagtgttttgggtatgaacttactaacattataaaaag
aatacaacacaacgtggaaaaatgaaatttctgatggtccagtcccaatt
ctccctgaatgagaatttagcatcatacagccgata
gaattctctgttaagatatctaccccatttttaaattatggtgtttagat
tttgtgatatctaatttgttgaattctctatattttggatattagacatc
tatctataaatatggacttgctaaaatccttttccattccttgggcttcc
tctttgtctgatagatggtgtcctttgttttactcaaattttctgtttca
tgagggtccgtttattaaacactgaccttgatgcatttggtgcccaatat
atacatataaatgatagatattggaatattctttctttgtttaaatttct
tgatttgaagtaatggtctttggtctagtctactatgttttccatatgac
agtatatcctttggaattattgctaaatttgttcttgattattccacatt
caagtttctttcccattcttcctctgatggatatttctatggaaaatacc
ttacgtgcattccaagtttcatttcatcctcaaaaaaacctcacacttta
cttactccatttcttattgtttttctagttgtttatatactaaaacttat
ttttaattaaaattggactaaaaaactataccttccaccgaatttatgtg
atttttgttcctctgataacttttcctatcgattgagcatcaaatgtcct
tgattatttgtatgttagatacatttgcccattcactcttaaggctcaaa
aaggactttgacgatttcctaagaagaaattcagctttctggtcagtgcc
cgttcctggtcaccttggggcatcttcccaccttcctttgaagactctcc
actctctcttacgaacactggtgagtggccacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_26109559_26110567
seq2: B6Ng01-099H05.b_148_1130 (reverse)

seq1  TATCTGGCTGGTATGATTTGTTTAAATTCTCATTTCAGTGAGAATTTGGG  50
      |||| |||| |||||||     |||||||||| ||||| ||||| |||||
seq2  TATC-GGCT-GTATGAT---GCTAAATTCTCA-TTCAGGGAGAA-TTGGG  43

seq1  ACTTGACCAATCAGAAATTTCATTTTTTTCACGTTGTTGTTTGTTATTTC  100
      ||| |||| ||||||||||||| ||||| |||||||     |||| | | 
seq2  ACTGGACC-ATCAGAAATTTCA-TTTTTCCACGTTG-----TGTTGTAT-  85

seq1  TTTTTTTATAATTGTTTAGTAATTTCATTACCCAAAACACTGCCTCTTAT  150
      | ||||||||||   ||||||| |||| |||||||||||||||||| |||
seq2  TCTTTTTATAAT--GTTAGTAAGTTCA-TACCCAAAACACTGCCTC-TAT  131

seq1  AGTAATAACCATTCATTTCAAAAGCAGCAAGACAGATCTTAACCTTTTTA  200
      ||| ||||||||||| |||||||||||||||||||||  ||||| |||||
seq2  AGT-ATAACCATTCA-TTCAAAAGCAGCAAGACAGAT-GTAACC-TTTTA  177

seq1  ACCTGCTCTCCTAAGTTACTGGAGAGTGTACACAAAACTCTGTGACTCCA  250
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACCTGCTCTCCTAAGTTACTGGAGAGTGTACACAAAA-TCTGTGACTCCA  226

seq1  TCACAAATTAATGTGAGAACTCAAGAGAGGAAGAGTGTTATAAAGCATAA  300
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCACAAATTAATGTGAG-ACTCAAGAGAGGAAGAGTGTTATAAAGCATAA  275

seq1  TAAATGTCATTAATAATAATTACTATTTGTTCAATATGTACAATTGTGTG  350
      |||| ||||| | || ||||| ||||||| ||||||||||||||||||||
seq2  TAAA-GTCATCACTAGTAATTGCTATTTGATCAATATGTACAATTGTGTG  324

seq1  TGTGTAATTTTGACTTTATGCATAATTACATTGCCA-GGGTTAGTATTAT  399
      |||||||    ||||  ||||||| | ||||||||| |||||||||||||
seq2  TGTGTAAGGAGGACTGAATGCATATTGACATTGCCAGGGGTTAGTATTAT  374

seq1  TAATTCTGCTTTAAAATTCTTGACATAAAATTTTATTCAAACCATAGAGC  449
      |||||||||||||||||||||||||||  |||||||||||||||||| ||
seq2  TAATTCTGCTTTAAAATTCTTGACATACCATTTTATTCAAACCATAGTGC  424

seq1  AATAATCAATGCTAGATGAGAGATCAGTGTAAAATCAAGTATACCAGTAT  499
       | |||||  ||||||||||||||||||||||||||||| ||||||||||
seq2  CACAATCACCGCTAGATGAGAGATCAGTGTAAAATCAAGCATACCAGTAT  474

seq1  CTAAAATAAAGTATACTTTAAATGATATGCTTAAAAGTAGGAATGCTTTA  549
       | ||||||||||| ||| ||||||||||||||||||||||||||| |||
seq2  GTCAAATAAAGTATGCTTCAAATGATATGCTTAAAAGTAGGAATGCCTTA  524

seq1  GATATAGTTTTGTAAGGGTCTTTGAATCCGCAGGGAGTGGTAACCCAGAC  599
      |||||||||  ||||||||||| |||||||||||||| ||||||||||||
seq2  GATATAGTTCAGTAAGGGTCTTGGAATCCGCAGGGAGCGGTAACCCAGAC  574

seq1  TCAAATAGTATGCAAAAGCAAAGAGCTTAAATTGTGCAGAAAGCCTGCAT  649
      |||||||||| ||||||||||||||||||||| |  ||||||||||||| 
seq2  TCAAATAGTAAGCAAAAGCAAAGAGCTTAAATAGGTCAGAAAGCCTGCAG  624

seq1  GCATGTGTCTACCATTCATGTAAATGAAGACCAGAAAGTGACCTCACAGG  699
      |||||||||||||||||||||||||||||||| ||||||| |||| ||||
seq2  GCATGTGTCTACCATTCATGTAAATGAAGACCCGAAAGTGCCCTCTCAGG  674

seq1  TTCAATTTAAAGTACATTAGAGGGTATTCCAAGTTTGTTAGGTGACTTTT  749
      |||||||||||| |||| ||||||||||||||||  |||||| |||||||
seq2  TTCAATTTAAAGGACATCAGAGGGTATTCCAAGTGGGTTAGGCGACTTTT  724

seq1  TATCTTGATTGTTTGGCCTTGTCTCTAGGGTTATGGGTGTCTTTGGGAAT  799
      ||||||||||||| ||||||||||  ||||||||||||||||||||||||
seq2  TATCTTGATTGTTAGGCCTTGTCTTAAGGGTTATGGGTGTCTTTGGGAAT  774

seq1  TGTGAGGGCTATGGGGACTTTCCAGAATTGTTGCTGGGGGTTCTTGAAAA  849
       ||||||| ||||||| ||||||| ||| |||||||||||||||||||||
seq2  GGTGAGGGTTATGGGGCCTTTCCACAATCGTTGCTGGGGGTTCTTGAAAA  824

seq1  CTGCTGCTGACTCATTCTGAGTGACTATTTTTACCGCAGGCCAGATGGAG  899
      ||| || |||||||||  ||||||||||||   || ||||||||||||||
seq2  CTGATGTTGACTCATTGGGAGTGACTATTTGGTCCCCAGGCCAGATGGAG  874

seq1  GTAGCCCTTGATTAGCTGCCTGAGTGCTGAGTTTTTTTTCAGGACCGGAC  949
      ||||||||||||||||| ||  | ||||||||||||||||||||||||||
seq2  GTAGCCCTTGATTAGCTCCCCTA-TGCTGAGTTTTTTTTCAGGACCGGAC  923

seq1  TTGCCTAGATGACCTCAATTCTGAGAAACAGAAACAGGCCTAGATTCTTG  999
      || | |||||| |||||||| ||||||||||||||||||  |||||| ||
seq2  TTTCATAGATGCCCTCAATTATGAGAAACAGAAACAGGCAGAGATTCATG  973

seq1  AAATGGTAGT  1009
      ||||||||||
seq2  AAATGGTAGT  983

seq1: chr1_26004615_26005450
seq2: B6Ng01-099H05.g_67_900

seq1  GAATTCTCTGTTTAGATATCTACCCCATTTTTAAATTATAATGTTTAGAT  50
      |||||||||||| ||||||||||||||||||||||||||  |||||||||
seq2  GAATTCTCTGTTAAGATATCTACCCCATTTTTAAATTATGGTGTTTAGAT  50

seq1  TTTGTGATATCTAATTTGTTGAATTCTCTATATTTTGGATATTAGACATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGATATCTAATTTGTTGAATTCTCTATATTTTGGATATTAGACATC  100

seq1  TATCTATAGATATGGACTTGCTAAAATCATTTTCCATTCAGTGGGCTTCC  150
      |||||||| ||||||||||||||||||| ||||||||||  |||||||||
seq2  TATCTATAAATATGGACTTGCTAAAATCCTTTTCCATTCCTTGGGCTTCC  150

seq1  TCTTTGTCTGATAGATGGTGTCCTTTGTTTTACAGAAGTTTTCTGTTTCA  200
      |||||||||||||||||||||||||||||||||  || ||||||||||||
seq2  TCTTTGTCTGATAGATGGTGTCCTTTGTTTTACTCAAATTTTCTGTTTCA  200

seq1  TGAGGTTCCATTTATTAATCACTGACCTTAATGCATTTGGTGCCCAATAT  250
      ||||| ||| |||||||| |||||||||| ||||||||||||||||||||
seq2  TGAGGGTCCGTTTATTAAACACTGACCTTGATGCATTTGGTGCCCAATAT  250

seq1  ATACATATAAGTGATAGATATTGGAATATTCTTTCTTTGTTTAAATTTCT  300
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATACATATAAATGATAGATATTGGAATATTCTTTCTTTGTTTAAATTTCT  300

seq1  TGATTTAGTGTAATGGTCTTTGGTCTAGTCTACTATGTTTTCCATATGAC  350
      ||||||   |||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGAAGTAATGGTCTTTGGTCTAGTCTACTATGTTTTCCATATGAC  350

seq1  AGTATATCCTTTGTAATTATAGCTAGATATGTTCTTGATTATTCCACATA  400
      ||||||||||||| |||||| |||| || |||||||||||||||||||| 
seq2  AGTATATCCTTTGGAATTATTGCTAAATTTGTTCTTGATTATTCCACATT  400

seq1  CAAGTTTCTTTCCCATTCTTCCTCTGATGGATATTTCTATGGTAGATACC  450
      |||||||||||||||||||||||||||||||||||||||||| | |||||
seq2  CAAGTTTCTTTCCCATTCTTCCTCTGATGGATATTTCTATGGAAAATACC  450

seq1  TTACATGCATTCCAAGTTTCATTTCAGCCTCAAAAACACCTCACACTTTA  500
      |||| ||||||||||||||||||||| ||||||||| |||||||||||||
seq2  TTACGTGCATTCCAAGTTTCATTTCATCCTCAAAAAAACCTCACACTTTA  500

seq1  CTTTCTCCATTTCTTATTATTTTTCAAGTTGTTTATATACTAAAACTTAT  550
      ||| |||||||||||||| |||||| ||||||||||||||||||||||||
seq2  CTTACTCCATTTCTTATTGTTTTTCTAGTTGTTTATATACTAAAACTTAT  550

seq1  TTTTAATTAAAATTGGACTAAAAAACTATACCTTCCACCTTATTTATGTG  600
      |||||||||||||||||||||||||||||||||||||||  |||||||||
seq2  TTTTAATTAAAATTGGACTAAAAAACTATACCTTCCACCGAATTTATGTG  600

seq1  ATTTTTGTTCCTCTGATAACTTTTCCTATTGATTGTGCATCAAATGTCCT  650
      ||||||||||||||||||||||||||||| ||||| ||||||||||||||
seq2  ATTTTTGTTCCTCTGATAACTTTTCCTATCGATTGAGCATCAAATGTCCT  650

seq1  TGATTATTTGTATGTTAGATACATTTGCCCATTCACTCTTAAGGCTAAAA  700
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGATTATTTGTATGTTAGATACATTTGCCCATTCACTCTTAAGGCTCAAA  700

seq1  AAGGACTTTGTTGATTTCCTTTAAAGAAATTTAGCTTTCTGGTCAGTGCC  750
      ||||||||||  ||||||||   |||||||| ||||||||||||||||||
seq2  AAGGACTTTGACGATTTCCTAAGAAGAAATTCAGCTTTCTGGTCAGTGCC  750

seq1  AGTTCCTGGTCACCTTGGGCACACAGTCCCACAGTCCCCAGAAGACTCTC  800
       ||||||||||||||||||  ||   ||||||  |||   ||||||||||
seq2  CGTTCCTGGTCACCTTGGG-GCATCTTCCCACCTTCCTTTGAAGACTCTC  799

seq1  CACTCGATCTTAGGATCACTGGTGAGTGGAACACAA  836
      |||||  ||||| || |||||||||||||  |||||
seq2  CACTCTCTCTTACGAACACTGGTGAGTGG-CCACAA  834