BAC Information

Click to search

BAC

Clone NameB6Ng01-099L03
Chromosome1 (Build37)
Map Location 105,151,555 - 105,152,694
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041056, LOC100041067
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099L03.bB6Ng01-099L03.g
ACCDH909418DH909419
length1,126780
definitionDH909418|Mus musculus domesticus DNA, BAC clone: B6Ng01-099L03, 5' end.DH909419|Mus musculus domesticus DNA, BAC clone: B6Ng01-099L03, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaattgcttttctagtccaaagttccaaagatttccacattcctc
caaaatagcacactcagattagccaaagcaatagcctacttcctgatctt
gatttctttcttaatcacatacttttatgttcctgtaataaattcattat
gaaaaaggtaaatcataacaaaaactacctagtagagtttacagtttttg
aacagccatgttgttttaatcatcttcttgcttcgagtaaatgagatata
taaccaaaacaactttgggaaaagtatttattttattgagagttgaaaga
cagtccatcactgcaaaggaatggtaccggaccttgaggcagctggtcac
attgcatctgtaataaggaaacaggcagaaagcaatggaaattgttgttc
agctcccctattccttattgtacagtcaaaaattgtatccaatagaactg
tgatgcttgccttaagatagactacccctcctcagttaacctaatttata
aattacagcataggagtttatctctgtgccaacaagtttatctctgagat
gactgtagtttttggtatctacaataagctatcatacatgcactgaaact
ctgactctggtagatgacagttaggtaggtaggtacgtagctagagcata
aaaaatgggtagataatagattttccaacacttctttttttttttttttt
tttttttcactatatcattatttaattttattttcattctttacataaaa
tacactacagttttccctacttcctttcctcccattcccacatacacctc
ccttctctcctagatccatcccttcctccatttaccttaaaacaaacaag
caaacaaaaacaaaagaggagcggcctctcaggaatattaatcgaacata
gcgtaacaaattacaataagactaggcacaaactctcacatgaaggctgg
ataaagactcaagcacaagcagagagtcagatgtactctcaaattccact
gtaggggttccataagagcacaatgataatataacaatattaagagctta
gctggagaactagacagaagtttgatgtccctcagtctcatgagccccta
tgagcatagctaagtaatatgtgggt

gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaaactcacacaatatatactccctgataagtggatattagccccaaac
ctaggatacccaagatataagatataaatttgctaaacacatgaaactca
agaagaatgaagactgaagtgtggacactatgcccctcttagatttgggg
aacaaaaacacccatggaaggagttacagagacaaagtttggagctgata
tgaaatgtatggacattgtagagactgtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_105151555_105152694
seq2: B6Ng01-099L03.b_46_1171

seq1  GAATTCAATTGCTTTTCTAGTCCAAAGTTCCAAAGATTTCCACATTCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTGCTTTTCTAGTCCAAAGTTCCAAAGATTTCCACATTCCTC  50

seq1  CAAAATAGCACACTCAGATTAGCCAAAGCAATAGCCTACTTCCTGATCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAGCACACTCAGATTAGCCAAAGCAATAGCCTACTTCCTGATCTT  100

seq1  GATTTCTTTCTTAATCACATACTTTTATGTTCCTGTAATAAATTCATTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTTTCTTAATCACATACTTTTATGTTCCTGTAATAAATTCATTAT  150

seq1  GAAAAAGGTAAATCATAACAAAAACTACCTAGTAGAGTTTACAGTTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGGTAAATCATAACAAAAACTACCTAGTAGAGTTTACAGTTTTTG  200

seq1  AACAGCCATGTTGTTTTAATCATCTTCTTGCTTCGAGTAAATGAGATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCATGTTGTTTTAATCATCTTCTTGCTTCGAGTAAATGAGATATA  250

seq1  TAACCAAAACAACTTTGGGAAAAGTATTTATTTTATTGAGAGTTGAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAAAACAACTTTGGGAAAAGTATTTATTTTATTGAGAGTTGAAAGA  300

seq1  CAGTCCATCACTGCAAAGGAATGGTACCGGACCTTGAGGCAGCTGGTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCATCACTGCAAAGGAATGGTACCGGACCTTGAGGCAGCTGGTCAC  350

seq1  ATTGCATCTGTAATAAGGAAACAGGCAGAAAGCAATGGAAATTGTTGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCATCTGTAATAAGGAAACAGGCAGAAAGCAATGGAAATTGTTGTTC  400

seq1  AGCTCCCCTATTCCTTATTGTACAGTCAAAAATTGTATCCAATAGAACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCCCTATTCCTTATTGTACAGTCAAAAATTGTATCCAATAGAACTG  450

seq1  TGATGCTTGCCTTAAGATAGACTACCCCTCCTCAGTTAACCTAATTTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTTGCCTTAAGATAGACTACCCCTCCTCAGTTAACCTAATTTATA  500

seq1  AATTACAGCATAGGAGTTTATCTCTGTGCCAACAAGTTTATCTCTGAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACAGCATAGGAGTTTATCTCTGTGCCAACAAGTTTATCTCTGAGAT  550

seq1  GACTGTAGTTTTTGGTATCTACAATAAGCTATCATACATGCACTGAAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTAGTTTTTGGTATCTACAATAAGCTATCATACATGCACTGAAACT  600

seq1  CTGACTCTGGTAGATGACAGTTAGGTAGGTAGGTACGTAGCTAGAGCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCTGGTAGATGACAGTTAGGTAGGTAGGTACGTAGCTAGAGCATA  650

seq1  AAAAATGGGTAGATAATAGATTTTCCAACACTTCTTTTTTTTTTTTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGGGTAGATAATAGATTTTCCAACACTTCTTTTTTTTTTTTTTTT  700

seq1  TTTTTTTCACTATATCATTATTTAATTTTATTTTCATTCTTTACATAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCACTATATCATTATTTAATTTTATTTTCATTCTTTACATAAAA  750

seq1  TACACTACAGTTTTCCCTACTTCCTTTCCTCCCATTCCCACATACACCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTACAGTTTTCCCTACTTCCTTTCCTCCCATTCCCACATACACCTC  800

seq1  CCTTCTCTCCTAGATCCAT-CCTTCCTCCATTTACCTTAAAACAAACAAG  849
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCTTCTCTCCTAGATCCATCCCTTCCTCCATTTACCTTAAAACAAACAAG  850

seq1  CAAACAAAAACAAAAGAGGAGCAGGCCTCTCAGGAATATTAATCGAACAT  899
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CAAACAAAAACAAAAGAGGAGC-GGCCTCTCAGGAATATTAATCGAACAT  899

seq1  AGCGTAACAAATTACAATAAGACTAGGCACAAACTCTCACATGAAGGCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTAACAAATTACAATAAGACTAGGCACAAACTCTCACATGAAGGCTG  949

seq1  GATAAAGACTCAAGCACAAGCAGAAGAGTCAGATGTACTCTCAAATTCCA  999
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GATAAAGACTCAAGCACAAGCAG-AGAGTCAGATGTACTCTCAAATTCCA  998

seq1  CTGTTAGGGGTTCCATAAGAGCACCAAATGTATAATATTAACATATATAC  1049
      ||| ||||||||||||||||||||  |||| |||||| ||||| ||||  
seq2  CTG-TAGGGGTTCCATAAGAGCAC--AATG-ATAATA-TAACA-ATATTA  1042

seq1  AGAGGCCTTAGCT-GAGACCTAGACAGAGTCTGTGATGTTCACTTCAGTC  1098
      ||||  ||||||| |||| |||||||||   | ||||||   | ||||||
seq2  AGAG--CTTAGCTGGAGAACTAGACAGA-AGTTTGATGT--CCCTCAGTC  1087

seq1  TCTATGAGCCCCTATGAGCATAGCTTAGTTATTTATGTGGGT  1140
      || |||||||||||||||||||||| ||| |  |||||||||
seq2  TC-ATGAGCCCCTATGAGCATAGCTAAGTAA--TATGTGGGT  1126


| Home | SequenceCutter | Blast | Download |