BAC Information

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BAC

Clone NameB6Ng01-099M08
Chromosome1 (Build37)
Map Location 31,553,652 - 31,554,812
singlet/doubletsinglet
Overlap genenone
Upstream geneEG624138, LOC100040699, Phf3, EG638995, Ptp4a1, EG435615, LOC669402, EG435616, 4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik, EG226957, EG624262
Downstream geneLOC624275, LOC666056, LOC100041238, Khdrbs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099M08.bB6Ng01-099M08.g
ACCDH909472DH909473
length1,1461,154
definitionDH909472|Mus musculus domesticus DNA, BAC clone: B6Ng01-099M08, 5' end.DH909473|Mus musculus domesticus DNA, BAC clone: B6Ng01-099M08, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaattgatttctaagataccacttccactattatactattatact
agtgggaatggtatactatattatattgtatattatgcatatatactata
tattactataatatattatacagtgaaaactgaaacatgactttaaatct
tgttttttttatattttgatatcatgtttgatgtatttgattacataata
gtgtaagctctttgtccattgtgtgtattaaatattcttgatgttctatc
ccaagtttatcccaagttagaaatatcttaatacataaagtttacttcta
cttattattaaaaactacaaatgtattgctgacaaagatattgtttattt
actgtgatgctattttagtaaataagcaagcatcattaatttaaattcag
tttaaaatgacaaaagcattgcactgtagtatcaaaaatgctttaattag
tcaataaaactttcaatgtctgtccaaactcaagattccctgtgttcttt
attgtttgtatgtttttgtataaatctatattagggacttctctcagctt
ttatcacgatttctgtcataatctacactggaaatctactaaaaaatttt
tattcaacacagaaaaattacctagtatctttctgatctcttccagtact
aagaagtcattgacgtattgaccatatccccctgcctatattggattctt
cacatccttttcaccagtctgctgaatatctaaaatacacatctgtgcat
ttattttatagagaatgtaagtactctctctacctgtcaaggatttaact
tcaaaagctctataactaactagaaagctctcaaaaactcagcataaaga
aacagagttaatggatattcagttcactatgccagacataaagcagaaag
gacatgcaatttattcattctttaggtaatttaaaatatgtccttcaaat
aaaatagatcatcaaaattttcatatctagttacatactttgatcttcta
acttttatatgtgtatttaatgctttatactatgtaccacctgttactat
gccaccaacttagaactaaacccagtcatcagccttatcaaaatgtcact
agctttatttaacagttcagagtcaggattcctagaaagctgcttt
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagattggctaagatcaaaaattcaggtgacagc
agatgctggcatggatgtggaaaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactacgggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaagtggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagttggaaagaacccagat
gcccttcaacagagtaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggcagcatcctgtgtgaggtaacacattcacaaa
ggaactcacacaatatgtactcacttataagtggatattagcccaaaaac
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aataatgaagactgaagtgtggacactatgcccctccttagaattgggaa
caaaacacccatggaaggagttacaaacacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatatactagcaagattttatagaaa
ggacccagatgtagctgtctcttgtgagactatgccggggtctagcaaac
acagaagtggatgctcacagtcaggtaatggatggatcacagggcttcca
tggaggagctagagaaagtacccaagagctaaaggatctgcaaccctata
gtggaacaacatatgactacagtaccccggagctctgactttagctgcat
tgtatcaagaatgctagtgcatcactgtaagaaggccattgaacctcaac
tttttatgccagtacagggacgcaggccaaaagggagtggtgggttagcg
aagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_31553652_31554812
seq2: B6Ng01-099M08.b_52_1197 (reverse)

seq1  AAAGCAAGCTTTTCTAGAGATTCTTGACTCTGAACTTGATAAATAAAGCT  50
      ||||| ||| ||||||| || || ||||||||||| || |||||||||||
seq2  AAAGC-AGC-TTTCTAG-GAATCCTGACTCTGAAC-TGTTAAATAAAGCT  46

seq1  AGTGACATTTTTGATAAGGCTGATTGACTGGGTTTTAGTCTAAGTTGGTG  100
      ||||||| ||||||||||||||| |||||||||||   ||||||||||||
seq2  AGTGACA-TTTTGATAAGGCTGA-TGACTGGGTTTAGTTCTAAGTTGGTG  94

seq1  GCATAGTAACAGGTTGGTAACATAGTATTAAAGCATTAAAATACACATAT  150
      ||||||||||||| |||| |||||||| ||||||||| ||||||||||||
seq2  GCATAGTAACAGG-TGGT-ACATAGTA-TAAAGCATT-AAATACACATAT  140

seq1  AAAAGTTAGAAGAATCAAAGTAATGTAACTTAGATATGAAAATTTTTGAT  200
      |||||||||||| |||||||| ||||||| |||||||||||| |||||||
seq2  AAAAGTTAGAAG-ATCAAAGT-ATGTAAC-TAGATATGAAAA-TTTTGAT  186

seq1  GATCTATTTTATTTTGAAGGACATATTTTAAATTACCTAAAGAATGAATA  250
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GATCTATTTTA-TTTGAAGGACATATTTTAAATTACCTAAAGAATGAATA  235

seq1  AATTGCATGTCCTTTCTGCTTTATGTCTGGCATAGTGAACTGAATATCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCATGTCCTTTCTGCTTTATGTCTGGCATAGTGAACTGAATATCCA  285

seq1  TTAACTCTGTTTCTTTATGCTGAGTTTTTGAGAGCTTTCTAGTTAGTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCTGTTTCTTTATGCTGAGTTTTTGAGAGCTTTCTAGTTAGTTAT  335

seq1  AGAGCTTTTGAAGTTAAATCCTTGACAGGTAGAGAGAGTACTTACATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTTTGAAGTTAAATCCTTGACAGGTAGAGAGAGTACTTACATTCT  385

seq1  CTATAAAATAAATGCACAGATGTGTATTTTAGATATTCAGCAGACTGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAAATAAATGCACAGATGTGTATTTTAGATATTCAGCAGACTGGTG  435

seq1  AAAAGGATGTGAAGAATCCAATATAGGCAGGGGGATATGGTCAATACGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGATGTGAAGAATCCAATATAGGCAGGGGGATATGGTCAATACGTC  485

seq1  AATGACTTCTTAGTACTGGAAGAGATCAGAAAGATACTAGGTAATTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTTCTTAGTACTGGAAGAGATCAGAAAGATACTAGGTAATTTTTC  535

seq1  TGTGTTGAATAAAAATTTTTTAGTAGATTTCCAGTGTAGATTATGACAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGAATAAAAATTTTTTAGTAGATTTCCAGTGTAGATTATGACAGA  585

seq1  AATCGTGATAAAAGCTGAGAGAAGTCCCTAATATAGATTTATACAAAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGTGATAAAAGCTGAGAGAAGTCCCTAATATAGATTTATACAAAAAC  635

seq1  ATACAAACAATAAAGAACACAGGGAATCTTGAGTTTGGACAGACATTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAACAATAAAGAACACAGGGAATCTTGAGTTTGGACAGACATTGAA  685

seq1  AGTTTTATTGACTAATTAAAGCATTTTTGATACTACAGTGCAATGCTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTATTGACTAATTAAAGCATTTTTGATACTACAGTGCAATGCTTTT  735

seq1  GTCATTTTAAACTGAATTTAAATTAATGATGCTTGCTTATTTACTAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTTAAACTGAATTTAAATTAATGATGCTTGCTTATTTACTAAAAT  785

seq1  AGCATCACAGTAAATAAACAATATCTTTGTCAGCAATACATTTGTAGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCACAGTAAATAAACAATATCTTTGTCAGCAATACATTTGTAGTTT  835

seq1  TTAATAATAAGTAGAAGTAAACTTTATGTATTAAGATATTTCTAACTTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAATAAGTAGAAGTAAACTTTATGTATTAAGATATTTCTAACTTGG  885

seq1  GATAAACTTGGGATAGAACATCAAGAATATTTAATACACACAATGGACAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAACTTGGGATAGAACATCAAGAATATTTAATACACACAATGGACAA  935

seq1  AGAGCTTACACTATTATGTAATCAAATACATCAAACATGATATCAAAATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTACACTATTATGTAATCAAATACATCAAACATGATATCAAAATA  985

seq1  TAAAAAAAACAAGATTTAAAGTCATGTTTCAGTTTTCACTGTATAATATA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAACAAGATTTAAAGTCATGTTTCAGTTTTCACTGTATAATATA  1035

seq1  TTATAGTAATATATAGTATATATGCATAATATACAATATAATATAGTATA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTAATATATAGTATATATGCATAATATACAATATAATATAGTATA  1085

seq1  CCATTCCCACTAGTATAATAGTATAATAGTGGAAGTGGTATCTTAGAAAT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCCCACTAGTATAATAGTATAATAGTGGAAGTGGTATCTTAGAAAT  1135

seq1  CAATTGAATTC  1161
      |||||||||||
seq2  CAATTGAATTC  1146