BAC Information

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BAC

Clone NameB6Ng01-099M10
Chromosome1 (Build37)
Map Location 153,175,717 - 153,376,144
singlet/doubletdoublet
Overlap geneIvns1abp, 1200016B10Rik, 1190005F20Rik, Rnf2
Upstream genePdc, BC003331, Tpr, EG625534, EG545370, LOC668040, LOC676758, EG668050, LOC668055, 3110040M04Rik, LOC100043286
Downstream geneNiban, Edem3, 1700025G04Rik, LOC668076, 5730449L18Rik, Glt25d2, Rgl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099M10.bB6Ng01-099M10.g
ACCDH909476DH909477
length5561,096
definitionDH909476|Mus musculus domesticus DNA, BAC clone: B6Ng01-099M10, 5' end.DH909477|Mus musculus domesticus DNA, BAC clone: B6Ng01-099M10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(153,175,717 - 153,176,278)(153,375,036 - 153,376,144)
sequence
aattccacttccggctctagtctgcactcctgtctagtctagaactgtaa
acctggaccgggtactattgcaaccactctcgaaagggcattgctttata
ttttctccacgtttattgttgttttgtttttgtttaattctcaagttgct
tacgatgttactcagctgtgaaacaaaattgactcagatgtgagcagact
gtggtatgtgaagctgggtataaagtgcggctcactcaccaggcacatcc
cactgttgggtggcaactcatttctaacaggatgagcctggccaagagac
tggtgggtgtggtggtgtgtacctttaattccagcactcgggagatagat
ctctgagttcaaggtcggcctggtttatttacatagtgttccagacttaa
aaaaaaaaaatctgtgttctctccagaccagagaatgatctataacatcc
acacccatagttttagttttgaatgagcttatatatagtatatagcaagt
caaaataaaagaatagtagccaaaaagaaggaggaggaggaggaggagga
ggagga
gaattccttagagagctgacacggcttttccagaatgttctctagcagct
atccagagaaggctgtctgaagagtgaacatggctctttcagaatttttt
ctgattttgattggaaaacccaataattacttttagaatttttctaacag
gatttttgacttggtcagaagatccaagaatttttttatagcagtttttc
tgactttggtcagaaaacccatgagctactcagagagtttttaaattttt
ttctgctgtttgtttgtttgtttgtttgtttgtttgtttgtttgtttgag
acagggtttctctgtgtagccctggctgtcctggaactcactctgtagac
catgctggcctcgaactcagaaatccgcctgcttctgcctcccaagggct
gggatcaaaggcgtgcgcctccactgcctggtgagcttttacagttttta
caagcagagaaaactgtcccaagcaaagctgtctagagcagagcagagca
gaacacacacacacacacacacacacacacacacacacacacacacacac
acacacactcacactcagagagagagagagagagaaagaaagagaggaga
gaaaagaggagaggagaggagagaacccagtctgggaaagtcatctcagc
agaacaaaggcttccagcttggacccacagtttgacttctcaggaaccct
ctgcaaaccaaggctgtccttggcaaaggaggacttcatgtattcatctt
actggttctctatccagcacctagatgagtgttcagaatgcaatgaaacc
ctcagagcgtattcacagaaagttaaacagatgaagtaactcttggagta
cctttcagcataaagggcatttaggaagccacattatttggtgccacttg
atcatttcctacagatatttctatagaggacaggagtgggttagcaggta
aaatgttgccacttcaagatggcctggggttgagcctaggatccctgtag
cctgtgcagtgctccagtccaccacccagcatggtcgtgcaggggggaag
aggacggaaaactgggagaacatctcttctggtttcatgtcctctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_153175717_153176278
seq2: B6Ng01-099M10.b_47_608

seq1  GAATTCAATTCCACTTCCGGCTCTAGTCTGCACTCCTGTCTAGTCTAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTCCACTTCCGGCTCTAGTCTGCACTCCTGTCTAGTCTAGAA  50

seq1  CTGTAAACCTGGACCGGGTACTATTGCAACCACTCTCGAAAGGGCATTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAACCTGGACCGGGTACTATTGCAACCACTCTCGAAAGGGCATTGC  100

seq1  TTTATATTTTCTCCACGTTTATTGTTGTTTTGTTTTTGTTTAATTCTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTTTCTCCACGTTTATTGTTGTTTTGTTTTTGTTTAATTCTCAA  150

seq1  GTTGCTTACGATGTTACTCAGCTGTGAAACAAAATTGACTCAGATGTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTTACGATGTTACTCAGCTGTGAAACAAAATTGACTCAGATGTGAG  200

seq1  CAGACTGTGGTATGTGAAGCTGGGTATAAAGTGCGGCTCACTCACCAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGTGGTATGTGAAGCTGGGTATAAAGTGCGGCTCACTCACCAGGC  250

seq1  ACATCCCACTGTTGGGTGGCAACTCATTTCTAACAGGATGAGCCTGGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCCACTGTTGGGTGGCAACTCATTTCTAACAGGATGAGCCTGGCCA  300

seq1  AGAGACTGGTGGGTGTGGTGGTGTGTACCTTTAATTCCAGCACTCGGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTGGTGGGTGTGGTGGTGTGTACCTTTAATTCCAGCACTCGGGAG  350

seq1  ATAGATCTCTGAGTTCAAGGTCGGCCTGGTTTATTTACATAGTGTTCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATCTCTGAGTTCAAGGTCGGCCTGGTTTATTTACATAGTGTTCCAG  400

seq1  ACTTAAAAAAAAAAAATCTGTGTTCTCTCCAGACCAGAGAATGATCTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAAAAAAAAAAATCTGTGTTCTCTCCAGACCAGAGAATGATCTATA  450

seq1  ACATCCACACCCATAGTTTTAGTTTTGAATGAGCTTATATATAGTATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCACACCCATAGTTTTAGTTTTGAATGAGCTTATATATAGTATATA  500

seq1  GCAAGTCAAAATAAAAGAATAGTAGCCAAAAAGAAGGAGGAGGAGGAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTCAAAATAAAAGAATAGTAGCCAAAAAGAAGGAGGAGGAGGAGGA  550

seq1  GGAGGAGGAGGA  562
      ||||||||||||
seq2  GGAGGAGGAGGA  562

seq1: chr1_153375036_153376144
seq2: B6Ng01-099M10.g_69_1164 (reverse)

seq1  CAGAGGACATGAAACCATGGAAGA-ATGCTCTTCCAGTTTTCCTGTACCC  49
      |||||||||||||||||  ||||| ||| ||| |||||||||| ||  ||
seq2  CAGAGGACATGAAACCA--GAAGAGATGTTCTCCCAGTTTTCC-GT--CC  45

seq1  TCCTCCCACCATGCCACAGACATGCTGGGGTGGTGGACTTGAGCCACTGC  99
      || |||| || || |||   |||||| |||||||||||| ||| ||||||
seq2  TCTTCCC-CCCTG-CACGACCATGCT-GGGTGGTGGACTGGAG-CACTGC  91

seq1  ACAGGCTTACAGGGATCCTAGGGCTCAACCCCAGGCCATCCTAGAGTGGC  149
      |||||| ||||||||||||| ||||||||||||||||||| |  ||||||
seq2  ACAGGC-TACAGGGATCCTA-GGCTCAACCCCAGGCCATCTTGAAGTGGC  139

seq1  AAACATTTTACCTGCTAACCCACTCCTGT-CTCTATAAGAAATTATCTGT  198
       |||||||||||||||||||||||||||| |||||| ||||| |||||||
seq2  -AACATTTTACCTGCTAACCCACTCCTGTCCTCTAT-AGAAA-TATCTGT  186

seq1  AGGAAATGATCAAGTGGCACCAAATAATGTGGCTTCCTAAATGCCCTTTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATGATCAAGTGGCACCAAATAATGTGGCTTCCTAAATGCCCTTTA  236

seq1  TGCCTGAAAGGTACTCCAAGAGTTACTTCATCTGTTTAACTTTCTGTGAA  298
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TG-CTGAAAGGTACTCCAAGAGTTACTTCATCTGTTTAACTTTCTGTGAA  285

seq1  TACGCTCTGAGGGTTTCATTGCATTCTGAACACTCATCTAGGTGCTGGAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGCTCTGAGGGTTTCATTGCATTCTGAACACTCATCTAGGTGCTGGAT  335

seq1  AGAGAACCAGTAAGATGAATACATGAAGTCCTCCTTTGCCAAGGACAGCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACCAGTAAGATGAATACATGAAGTCCTCCTTTGCCAAGGACAGCC  385

seq1  TTGGTTTGCAGAGGGTTCCTGAGAAGTCAAACTGTGGGTCCAAGCTGGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTGCAGAGGGTTCCTGAGAAGTCAAACTGTGGGTCCAAGCTGGAA  435

seq1  GCCTTTGTTCTGCTGAGATGACTTTCCCAGACTGGGTTCTCTCCTCTCCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGTTCTGCTGAGATGACTTTCCCAGACTGGGTTCTCTCCTCTCCT  485

seq1  CTCCTCTTTTCTCTCCTCTCTTTCTTTCTCTCTCTCTCTCTCTCTGAGTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTTTTCTCTCCTCTCTTTCTTTCTCTCTCTCTCTCTCTCTGAGTG  535

seq1  TGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  585

seq1  TGTGTGTGTTCTGCTCTGCTCTGCTCTAGACAGCTTTGCTTGGGACAGTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTTCTGCTCTGCTCTGCTCTAGACAGCTTTGCTTGGGACAGTT  635

seq1  TTCTCTGCTTGTAAAAACTGTAAAAGCTCACCAGGCAGTGGAGGCGCACG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGCTTGTAAAAACTGTAAAAGCTCACCAGGCAGTGGAGGCGCACG  685

seq1  CCTTTGATCCCAGCCCTTGGGAGGCAGAAGCAGGCGGATTTCTGAGTTCG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGATCCCAGCCCTTGGGAGGCAGAAGCAGGCGGATTTCTGAGTTCG  735

seq1  AGGCCAGCATGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGCATGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAG  785

seq1  AGAAACCCTGTCTCAAACAAACAAACAAACAAACAAACAAACAAACAAAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCCTGTCTCAAACAAACAAACAAACAAACAAACAAACAAACAAAC  835

seq1  AAACAGCAGAAAAAAATTTAAAAACTCTCTGAGTAGCTCATGGGTTTTCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCAGAAAAAAATTTAAAAACTCTCTGAGTAGCTCATGGGTTTTCT  885

seq1  GACCAAAGTCAGAAAAACTGCTATAAAAAAATTCTTGGATCTTCTGACCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAAGTCAGAAAAACTGCTATAAAAAAATTCTTGGATCTTCTGACCA  935

seq1  AGTCAAAAATCCTGTTAGAAAAATTCTAAAAGTAATTATTGGGTTTTCCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAAAATCCTGTTAGAAAAATTCTAAAAGTAATTATTGGGTTTTCCA  985

seq1  ATCAAAATCAGAAAAAATTCTGAAAGAGCCATGTTCACTCTTCAGACAGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAATCAGAAAAAATTCTGAAAGAGCCATGTTCACTCTTCAGACAGC  1035

seq1  CTTCTCTGGATAGCTGCTAGAGAACATTCTGGAAAAGCCGTGTCAGCTCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTGGATAGCTGCTAGAGAACATTCTGGAAAAGCCGTGTCAGCTCT  1085

seq1  CTAAGGAATTC  1109
      |||||||||||
seq2  CTAAGGAATTC  1096