BAC Information

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BAC

Clone NameB6Ng01-099N20
Chromosome18 (Build37)1 (Build37)
Map Location 71,848,625 - 71,849,078170,677,420 - 170,678,226
singlet/doubletsingletsinglet
Overlap geneDcc
Upstream genenone
Downstream geneLOC629684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099N20.bB6Ng01-099N20.g
ACCDH909540DH909541
length634957
definitionDH909540|Mus musculus domesticus DNA, BAC clone: B6Ng01-099N20, 5' end.DH909541|Mus musculus domesticus DNA, BAC clone: B6Ng01-099N20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(71,848,625 - 71,849,078)(170,677,420 - 170,678,226)
sequence
gaattcactgcctacgtagactgttttgtttggtttggtttctaggatga
ctattttcatagtgttagtctttttgtttttgtttgtttgtttgtttttc
tttaatattgagaatttcacatatgcatataataaaatacaatatgtata
cacccatctccttcttcaaactctccccaacacaaagcaactaatttccc
tttttgtctttttccaattttttattagatattttcttcatttacatttc
aaatgctatcccgaaagtcctctataccctccccaccccctgctccacta
cccacccactcccacttcttggccctggtgttcccctgtactgaggcata
taaagtttgcaataccaaggggcctctcttctcaatgatggctgactagg
ccatcttctgctacatatgcagctagagacacgagctctgggggtactag
ttagttcatattgttgttccacctatagggttgcagacctcttcagctcc
ttaggtactttctctagctcctccattgggggccctgtattccatccaat
agctgactgtgagcatctacttctgtgtttaccaggcactgacatagcct
cacaagaaacagctatatcaaggtcctttcagca
gaattctctatgcagacaaagctagctataaactcacaaagatctacatg
cctccgaagacacacgagataatcttataaagcatgtactgtgtgctctg
aaaaatttctgtgatggtaatgataataaatttctgtctccaatatttaa
ggaaagaattggaaaatgatataaaaatactatcagtgtgggacccatcc
accctgctggagacatattttccttttggtcccataacttgtcctgttgc
agattcagtgttccagaccacctcccatacccaaagacagtctgacttga
ggaagtccattatacccaggctcataggagggacaggctccagtaagaga
cagcaaggccaattaactccagagataaccagatagagagaggcaagtgc
aagaacataagcatcggaaaccaatgccacttggggtcatcagaacctag
ttctcccaccagagcaagccctggataccccaacacacttgaaaagcaag
attctgccctaaaatcccatttcatgaaggtgatagaggacagtaaagag
gacattagaaaactcccttaaagaatacaagagaacaagggtaagcaggt
agaagcccttaaagaggaaacacataaatccctataagaaatacaggaaa
acacaatcaaacaggtaaaaaacaaacaaacaaacaaacaaaaaacaaaa
acaaaactgaataaaaccattcaggatctaataatgaaatagaaacaaag
ggaggcaagcctggagatggaaaacctaggaaagagaccagatataagca
ctaccaacaaagtacaagatatggaagagagaatttcaggtgtagaagat
accacagaagatgttgacacatcagcaaagcaaagtgcaaaatcctccta
actcaaaacatccagaaaatacaggacacaatggaaagaacaaatctaac
aataaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_71848625_71849078
seq2: B6Ng01-099N20.b_165_681

seq1  --------------------------------------------------  0
                                                        
seq2  CACATATGCATATAATAAAATACAATATGTATACACCCATCTCCTTCTTC  50

seq1  -------------CACATATGCATATAA----------TAGCTTTTTTCA  27
                   |||| | |||  |||          |  |||||| ||
seq2  AAACTCTCCCCAACACA-AAGCAACTAATTTCCCTTTTTGTCTTTTTCCA  99

seq1  A-TTTTTATTAGGTATTTACTTCATTTACATTTCAAACGCTATCCTGAAA  76
      | |||||||||| ||||| |||||||||||||||||| ||||||| ||||
seq2  ATTTTTTATTAGATATTTTCTTCATTTACATTTCAAATGCTATCCCGAAA  149

seq1  GTCCCCTATACCCTCCCCCTCCCCCTGCTTCCCTACCCACCTACTCCTAC  126
      |||| ||||||||| |||| ||||||||| | ||||||||| ||||| ||
seq2  GTCCTCTATACCCT-CCCCACCCCCTGCTCCACTACCCACCCACTCCCAC  198

seq1  TTCTTGGCCCTGGTGTTCCCCTGTACTGGGGCATACATATAAAGTTTGCA  176
      |||||||||||||||||||||||||||| ||    |||||||||||||||
seq2  TTCTTGGCCCTGGTGTTCCCCTGTACTGAGG----CATATAAAGTTTGCA  244

seq1  AAACCAAGGGGCCTCTCTGCCCAATGATGGCCAACTAGGCCATCTTCTGC  226
      | |||||||||||||||| | ||||||||||  |||||||||||||||||
seq2  ATACCAAGGGGCCTCTCTTCTCAATGATGGCTGACTAGGCCATCTTCTGC  294

seq1  TACATATGCATCTAGAGACACGAGCTCTGGGGGGTACTGGTTAGTTCATA  276
      |||||||||| ||||||||||||||||| ||||||||| |||||||||||
seq2  TACATATGCAGCTAGAGACACGAGCTCT-GGGGGTACTAGTTAGTTCATA  343

seq1  ATGTTGTTCCACCTATAGGGTTGCAGGTCCCCTCAGCTCCTTGGGTACTT  326
       |||||||||||||||||||||||||  | | |||||||||| |||||||
seq2  TTGTTGTTCCACCTATAGGGTTGCAGACCTCTTCAGCTCCTTAGGTACTT  393

seq1  TCTCTAGCTCCTCCATTAGGGGCCCTGTGTTCCATCCAATAGCTGTCTGT  376
      ||||||||||||||||| |||||||||| |||||||||||||||| ||||
seq2  TCTCTAGCTCCTCCATTGGGGGCCCTGTATTCCATCCAATAGCTGACTGT  443

seq1  GAGCATCCACTTCTGTGTTTGCCAGGCACTGGCATAGCCTCACAAGAGAC  426
      ||||||| |||||||||||| |||||||||| ||||||||||||||| ||
seq2  GAGCATCTACTTCTGTGTTTACCAGGCACTGACATAGCCTCACAAGAAAC  493

seq1  AGCTATGTCAGGGAGGGTCCTTTCAGCA  454
      |||||| ||    | |||||||||||||
seq2  AGCTATATC----AAGGTCCTTTCAGCA  517

seq1: chr1_170677420_170678226
seq2: B6Ng01-099N20.g_67_873

seq1  GAATTCTCTATGCAGACAAAGCTAGCTATAAACTCACAAAGATCTACATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTATGCAGACAAAGCTAGCTATAAACTCACAAAGATCTACATG  50

seq1  CCTCCGAAGACACACGAGATAATCTTATAAAGCATGTACTGTGTGCTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCGAAGACACACGAGATAATCTTATAAAGCATGTACTGTGTGCTCTG  100

seq1  AAAAATTTCTGTGATGGTAATGATAATAAATTTCTGTCTCCAATATTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTTCTGTGATGGTAATGATAATAAATTTCTGTCTCCAATATTTAA  150

seq1  GGAAAGAATTGGAAAATGATATAAAAATACTATCAGTGTGGGACCCATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAATTGGAAAATGATATAAAAATACTATCAGTGTGGGACCCATCC  200

seq1  ACCCTGCTGGAGACATATTTTCCTTTTGGTCCCATAACTTGTCCTGTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGCTGGAGACATATTTTCCTTTTGGTCCCATAACTTGTCCTGTTGC  250

seq1  AGATTCAGTGTTCCAGACCACCTCCCATACCCAAAGACAGTCTGACTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCAGTGTTCCAGACCACCTCCCATACCCAAAGACAGTCTGACTTGA  300

seq1  GGAAGTCCATTATACCCAGGCTCATAGGAGGGACAGGCTCCAGTAAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCCATTATACCCAGGCTCATAGGAGGGACAGGCTCCAGTAAGAGA  350

seq1  CAGCAAGGCCAATTAACTCCAGAGATAACCAGATAGAGAGAGGCAAGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGGCCAATTAACTCCAGAGATAACCAGATAGAGAGAGGCAAGTGC  400

seq1  AAGAACATAAGCATCGGAAACCAATGCCACTTGGGGTCATCAGAACCTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACATAAGCATCGGAAACCAATGCCACTTGGGGTCATCAGAACCTAG  450

seq1  TTCTCCCACCAGAGCAAGCCCTGGATACCCCAACACACTTGAAAAGCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCACCAGAGCAAGCCCTGGATACCCCAACACACTTGAAAAGCAAG  500

seq1  ATTCTGCCCTAAAATCCCATTTCATGAAGGTGATAGAGGACAGTAAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCCCTAAAATCCCATTTCATGAAGGTGATAGAGGACAGTAAAGAG  550

seq1  GACATTAGAAAACTCCCTTAAAGAATACAAGAGAACAAGGGTAAGCAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTAGAAAACTCCCTTAAAGAATACAAGAGAACAAGGGTAAGCAGGT  600

seq1  AGAAGCCCTTAAAGAGGAAACACATAAATCCCTATAAGAAATACAGGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCCTTAAAGAGGAAACACATAAATCCCTATAAGAAATACAGGAAA  650

seq1  ACACAATCAAACAGGTAAAAAACAAACAAACAAACAAACAAAAAACAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATCAAACAGGTAAAAAACAAACAAACAAACAAACAAAAAACAAAA  700

seq1  ACAAAACTGAATAAAACCATTCAGGATCTAATAATGAAATAGAAACAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACTGAATAAAACCATTCAGGATCTAATAATGAAATAGAAACAAAG  750

seq1  GGAGGCAAGCCTGGAGATGGAAAACCTAGGAAAGAGACCAGATATAAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAAGCCTGGAGATGGAAAACCTAGGAAAGAGACCAGATATAAGCA  800

seq1  CTACCAA  807
      |||||||
seq2  CTACCAA  807