BAC Information

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BAC

Clone NameB6Ng01-099O12
Chromosome1 (Build37)
Map Location 140,413,903 - 140,414,896
singlet/doubletsinglet
Overlap geneNek7
Upstream geneLOC100043143, Ptprc, LOC100042596, Atp6v1g3, LOC100042600
Downstream geneLOC545363, LOC667745, Lhx9, 2310009B15Rik, 1700019P21Rik, LOC100042623, Dennd1b, Crb1, Zbtb41, Aspm, F13b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099O12.bB6Ng01-099O12.g
ACCDH909568DH909569
length1,148987
definitionDH909568|Mus musculus domesticus DNA, BAC clone: B6Ng01-099O12, 5' end.DH909569|Mus musculus domesticus DNA, BAC clone: B6Ng01-099O12, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaggaataccaaatggctgagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacagcagtcagaatggctaagatcaaaaattcaggtgatagc
agatgctggttacgttgtggagaaagagaaacactcctccgttgttggtg
ggattgcaagcttgtacaaccactctggaaatcagcctggtggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaagtgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgacattcctaggcaa
atggatggatctggagggtatcatcctgagtgaggtaacccaatcacaaa
agaactcacatgatatgtactcactgataactggatatttgcccagaaac
ttaggatacccaaaatacaatttgcaaaacacatgaacactcaagaagaa
cgaagaccaaagtgtggacactttgccccttcttagaattgggaacaaaa
cacccatggaaggagttacagagacaaagtttggagctgagaagaaagga
tggaccatccagagactgccacacccagggatccatcccataatcagcca
ccaaatgcagacagtattgcgtatgccagcaagattttgctgaaaggacc
ctgatatagctgtctcttgtgaggctatgccagtgcctggcaaacacaga
agtggatgtatgctctcagtcagctattggatggaacacaggccccaatg
agagctagagaaagtactcagagctgagggtctgcaccctataggtggac
aacatatgactacagtacccctcggagctcgtgtctctagctgcatatgt
atcagagatgctagtcgcaattggaagagaacctgattgcaactttaatg
ccataacatgaacaccaggtcaagatgggatggggtgtgttataagaa
gaattctagttaaaggttgagctgcatgggtgactagaaacaccataatt
tactaaaacttaagtcatggtataaaagttttcatgagtgtattcactgc
acataacaaagcaaagctgtcttttgaatggatgaaactacgttctggag
agtgagatggtcacaggaaagctgaagcaaagcactgagagtatcaacag
gctgtcggagggaggggtccagagactgaaagggaaactgctaaacacaa
ccagaagcccacagctacagagcagcgtcgtccagtttcctgtcttaagt
ttaacaggaaactatgaaagcagcatagcaagatccaagctctcagcccc
actggatactctgtatataaaaatcatttttaaaaacaacagtgcagtgg
gtttcttactgaatagtacttataaattaccaacatgaagaaacggtacc
tttaaacagcttttttttttcctacaaagctttaaaaaaaaatcttaact
ttatgaagcatatgtcctaacatcaacttttaaatctgtttttttactgt
atttgaaaaccacatttggaaaagttcaaccaattaattttttggtattg
aatgcaaaaaaaaaaaaaaaaccctatatttgaaaaagtgaaaagccagc
ccttctgagtcgcacctgtggccagctaagggcgggctaaaatggcaaag
ctacagggaaactccgggagtcttttccatcagcaacacccaacaccccc
ctgcacgtgtgcccacttgctagagaaagaaaaaattgtctgtttaaaaa
aaggtaaaaaatactaggctaatttttccaacatagccactgggctgaaa
aatcaataactttttgcattttcttagcaagtaagtagtaacctattcta
atgaccaggtaatatgaaagtagacactgtccttctactatggagaaatg
cccatattggggtttcaaagaggtttcttttttggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_140413903_140414896
seq2: B6Ng01-099O12.g_70_1056

seq1  GAATTCTAGTTAAAGGTTGAGCTGCATGGGTGACTAGAAACACCATAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGTTAAAGGTTGAGCTGCATGGGTGACTAGAAACACCATAATT  50

seq1  TACTAAAACTTAAGTCATGGTATAAAAGTTTTCATGAGTGTATTCACTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAAACTTAAGTCATGGTATAAAAGTTTTCATGAGTGTATTCACTGC  100

seq1  ACATAACAAAGCAAAGCTGTCTTTTGAATGGATGAAACTACGTTCTGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAACAAAGCAAAGCTGTCTTTTGAATGGATGAAACTACGTTCTGGAG  150

seq1  AGTGAGATGGTCACAGGAAAGCTGAAGCAAAGCACTGAGAGTATCAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGATGGTCACAGGAAAGCTGAAGCAAAGCACTGAGAGTATCAACAG  200

seq1  GCTGTCGGAGGGAGGGGTCCAGAGACTGAAAGGGAAACTGCTAAACACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCGGAGGGAGGGGTCCAGAGACTGAAAGGGAAACTGCTAAACACAA  250

seq1  CCAGAAGCCCACAGCTACAGAGCAGCGTCGTCCAGTTTCCTGTCTTAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGCCCACAGCTACAGAGCAGCGTCGTCCAGTTTCCTGTCTTAAGT  300

seq1  TTAACAGGAAACTATGAAAGCAGCATAGCAAGATCCAAGCTCTCAGCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGGAAACTATGAAAGCAGCATAGCAAGATCCAAGCTCTCAGCCCC  350

seq1  ACTGGATACTCTGTATATAAAAATCATTTTTAAAAACAACAGTGCAGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGATACTCTGTATATAAAAATCATTTTTAAAAACAACAGTGCAGTGG  400

seq1  GTTTCTTACTGAATAGTACTTATAAATTACCAACATGAAGAAACGGTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTACTGAATAGTACTTATAAATTACCAACATGAAGAAACGGTACC  450

seq1  TTTAAACAGCTTTTTTTTTTCCTACAAAGCTTTAAAAAAAAATCTTAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACAGCTTTTTTTTTTCCTACAAAGCTTTAAAAAAAAATCTTAACT  500

seq1  TTATGAAGCATATGTCCTAACATCAACTTTTAAATCTGTTTTTTTACTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAAGCATATGTCCTAACATCAACTTTTAAATCTGTTTTTTTACTGT  550

seq1  ATTTGAAAACCACATTTGGAAAAGTTCAACCAATTAATTTTTTGGTATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAAACCACATTTGGAAAAGTTCAACCAATTAATTTTTTGGTATTG  600

seq1  AATGCAAAAAAAAAAAAAAAACCCTATATTTGAGAAAGTGAAAAGCCAGC  650
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AATGCAAAAAAAAAAAAAAAACCCTATATTTGAAAAAGTGAAAAGCCAGC  650

seq1  CCTTCTGAGTCGCACCTGTGGCCAGCTGAGGGCTGGCTAAAATGGCAAAG  700
      ||||||||||||||||||||||||||| ||||| ||||||||||||||||
seq2  CCTTCTGAGTCGCACCTGTGGCCAGCTAAGGGCGGGCTAAAATGGCAAAG  700

seq1  CTACAGGGAAACTACTGGAGTCCTTTTCCATCAGCAACAACCAACACCCC  750
      ||||||||||||| | ||||| ||||||||||||||||| ||||||||||
seq2  CTACAGGGAAACTCCGGGAGT-CTTTTCCATCAGCAACACCCAACACCCC  749

seq1  CCTGCCACTGTGCCCACTTGCTAGAGGAAGAAAAAA-TGTCTGTTTAAAA  799
      |||||   |||||||||||||||||| ||||||||| |||||||||||||
seq2  CCTGCACGTGTGCCCACTTGCTAGAGAAAGAAAAAATTGTCTGTTTAAAA  799

seq1  AAAGGT-AAGAATACTAGGCTAATTTTTCCTACATAG-CACATGGCTGAA  847
      |||||| || |||||||||||||||||||| |||||| |||  |||||||
seq2  AAAGGTAAAAAATACTAGGCTAATTTTTCCAACATAGCCACTGGGCTGAA  849

seq1  AAATCAATTACTTTTTGCAATTTCATTAGCAAGTAAGTCAGTAACCTATT  897
      |||||||| |||||||||| |||| ||||||||||||| |||||||||||
seq2  AAATCAATAACTTTTTGCATTTTC-TTAGCAAGTAAGT-AGTAACCTATT  897

seq1  CTAAATGACCAGGTAATAATGAAAGTAGACCACTGTCCTTCTAACTATGG  947
      || |||||||||||||| ||||||||||| |||||||||||| |||||||
seq2  CT-AATGACCAGGTAAT-ATGAAAGTAGA-CACTGTCCTTCT-ACTATGG  943

seq1  AGAAATGCCCATATT-GGGTTTCAATAGGAAGGTTTTCTTTTATGGCA  994
      ||||||||||||||| ||||||||| ||  ||| |||||||| |||||
seq2  AGAAATGCCCATATTGGGGTTTCAA-AG--AGG-TTTCTTTTTTGGCA  987