BAC Information

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BAC

Clone NameB6Ng01-099O23
Chromosome1 (Build37)6 (Build37)
Map Location 195,394,807 - 195,395,91239,756,641 - 39,756,738
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneHhat, A730013G03Rik, Sertad4, LOC100039677, Syt14, AA408296, Irf6, A130010J15Rik, Traf3ip3, Hsd11b1, G0s2, Lamb3, Camk1g
Downstream geneLOC667208
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099O23.bB6Ng01-099O23.g
ACCDH909586DH909587
length1,096348
definitionDH909586|Mus musculus domesticus DNA, BAC clone: B6Ng01-099O23, 5' end.DH909587|Mus musculus domesticus DNA, BAC clone: B6Ng01-099O23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(195,394,807 - 195,395,912)(39,756,641 - 39,756,738)
sequence
gaattctcaagatgtgaggatgccaacaggggagaggctaaggcaggagg
aattcatcctttgtagattgcagttccaactcttcaggggatgctcagct
caggcaagcagggagttaaggtctgagaagagtggaattttccccgtggc
cgtacagacttgttttaaccacaggaatgaacacaagatgcgacttgttc
cctctgctattgtctggttccctttccctccagcaggcagccaggctaat
gtgtgacatttctccaggcatccagagtgttccctgcccttctctttata
gcttttcagctgcctttctcccagaccttcaccaacctcaccttcaaagg
cttttcaataagccagggctgtcctctgtggactgggcagggaaggcatg
tggatttaggttatttattaatttcaagatgtgtgctccctgttctttct
gtgccatctcctacattttcttctggcaacctagaaattccaccattatc
ttttcccaatccctaagtggcatgatgggcaccaggcacaggagccgccc
atgctggctggggcttccaacagcctcatcagcacactgagaggacagca
gttttcctctcaattaattcttgttgccagcccccaccccccccccaagc
tctaagtccttccaagccttggttagaggtcttattttatggatgtgcca
gttgtctagtctctgcatagctcaggggaggccgctccccagccccagca
catttccatcattaaccttgagtacagagggactcagctttactcccaga
tggtgggacagacagagggtgtaggagagggattacacatcacatacgag
tcctctcccttggtttctccatattcctgttgtaccttttcacctctttg
cctggttctccagttctctttgcgcacaccagatgacaaatgacaacagg
aaatccaagtaagcctgcagctgggactcacttctccctgctgggactga
atgaaagcttttctgcagacatgttctttaaaaatccacttaaagcagca
ttagaaatgaaaatatgttttctttcaaagcatacccttggataag
tttgagtgtggctagtgacaagttacccatgctacagtggatgggctgcc
ccacacccatgagtaaaaggccagcacttagtgtattatttcaaaaaaaa
aaatggcagagaggaaagaaggaaattaaaatgggaggagaatgtgtgct
ggagaagatctgttgggagttggagaaggaaaatggggactagatatgat
catatttcgttgtatgtttgtatgaaattctcaaagaatacgttttaaaa
agtaaaaaaaaaaaaaatagccaagtggtagtggtgcatgcctttttttt
ccagtacttgggaggcagaggtagatgaatctctgagttcaaggccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_195394807_195395912
seq2: B6Ng01-099O23.b_49_1144

seq1  GAATTCTCAAGATGTGAGGATGCCAACAGGGGAGAGGCTAAGGCAGGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAGATGTGAGGATGCCAACAGGGGAGAGGCTAAGGCAGGAGG  50

seq1  AATTCATCCTTTGTAGATTGCAGTTCCAACTCTTCAGGGGATGCTCAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATCCTTTGTAGATTGCAGTTCCAACTCTTCAGGGGATGCTCAGCT  100

seq1  CAGGCAAGCAGGGAGTTAAGGTCTGAGAAGAGTGGAATTTTCCCCGTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAAGCAGGGAGTTAAGGTCTGAGAAGAGTGGAATTTTCCCCGTGGC  150

seq1  CGTACAGACTTGTTTTAACCACAGGAATGAACACAAGATGCGACTTGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACAGACTTGTTTTAACCACAGGAATGAACACAAGATGCGACTTGTTC  200

seq1  CCTCTGCTATTGTCTGGTTCCCTTTCCCTCCAGCAGGCAGCCAGGCTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCTATTGTCTGGTTCCCTTTCCCTCCAGCAGGCAGCCAGGCTAAT  250

seq1  GTGTGACATTTCTCCAGGCATCCAGAGTGTTCCCTGCCCTTCTCTTTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGACATTTCTCCAGGCATCCAGAGTGTTCCCTGCCCTTCTCTTTATA  300

seq1  GCTTTTCAGCTGCCTTTCTCCCAGACCTTCACCAACCTCACCTTCAAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCAGCTGCCTTTCTCCCAGACCTTCACCAACCTCACCTTCAAAGG  350

seq1  CTTTTCAATAAGCCAGGGCTGTCCTCTGTGGACTGGGCAGGGAAGGCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCAATAAGCCAGGGCTGTCCTCTGTGGACTGGGCAGGGAAGGCATG  400

seq1  TGGATTTAGGTTATTTATTAATTTCAAGATGTGTGCTCCCTGTTCTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTAGGTTATTTATTAATTTCAAGATGTGTGCTCCCTGTTCTTTCT  450

seq1  GTGCCATCTCCTACATTTTCTTCTGGCAACCTAGAAATTCCACCATTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCATCTCCTACATTTTCTTCTGGCAACCTAGAAATTCCACCATTATC  500

seq1  TTTTCCCAATCCCTAAGTGGCATGATGGGCACCAGGCACAGGAGCCGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCAATCCCTAAGTGGCATGATGGGCACCAGGCACAGGAGCCGCCC  550

seq1  ATGCTGGCTGGGGCTTCCAACAGCCTCATCAGCACACTGAGAGGACAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGCTGGGGCTTCCAACAGCCTCATCAGCACACTGAGAGGACAGCA  600

seq1  GTTTTCCTCTCAATTAATTCTTGTTGCCAGCCCCCACCCCCCCCCCAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCTCTCAATTAATTCTTGTTGCCAGCCCCCACCCCCCCCCCAAGC  650

seq1  TCTAAGTCCTTCCAAGCCTTGGTTAGAGGTCTTATTTTATGGATGTGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTCCTTCCAAGCCTTGGTTAGAGGTCTTATTTTATGGATGTGCCA  700

seq1  GTTGTCTAGTCTCTGCATAGCTCAGGGGAGGCCGCTCCCCAGCCCCAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCTAGTCTCTGCATAGCTCAGGGGAGGCCGCTCCCCAGCCCCAGCA  750

seq1  CATTTCCATCATTAACCTTGAGTACAGAGGGACTCAGCTTTACTCCCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCATCATTAACCTTGAGTACAGAGGGACTCAGCTTTACTCCCAGA  800

seq1  TGGTGGGACAGACAGAGGGTGTAGGAGAGGGATTACACATCACATACGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGACAGACAGAGGGTGTAGGAGAGGGATTACACATCACATACGAG  850

seq1  TCCTCTCCCTTGGTTTCTCCATATTCCTGTTGTACCTTTTCACCTCTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCCCTTGGTTTCTCCATATTCCTGTTGTACCTTTTCACCTCTTTG  900

seq1  CCTGGTTCTCCAGTTCTCTTTGCGCACACCAGGATGACAAATGACAACAG  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCTGGTTCTCCAGTTCTCTTTGCGCACACCA-GATGACAAATGACAACAG  949

seq1  GAAATCCAAGTAAGCCTGCAGCTGGGGACTCACTTCTCCCTGCTGGGACT  1000
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GAAATCCAAGTAAGCCTGCAGCT-GGGACTCACTTCTCCCTGCTGGGACT  998

seq1  GGAATGGAAAGCTTTTCTGCAGACAATGTTCTTTAAAAAATCCACTTTAA  1050
       |||| |||||||||||||||||| ||||||||| |||||||||| ||||
seq2  -GAAT-GAAAGCTTTTCTGCAGAC-ATGTTCTTT-AAAAATCCAC-TTAA  1043

seq1  AGCAGCATTAGAAAAATTAAAATATGTTTCTTTCCAAAGCATACCCCTTG  1100
      |||||||||||  |||| |||||||||||  || ||||||||| ||||||
seq2  AGCAGCATTAG--AAATGAAAATATGTTTTCTTTCAAAGCATA-CCCTTG  1090

seq1  GATAAG  1106
      ||||||
seq2  GATAAG  1096

seq1: chr6_39756641_39756738
seq2: B6Ng01-099O23.g_320_422

seq1  TAAAAAGTAAAAAAAAAAAAA--TGTCTGGTGGTGATGGCACACGGC-TT  47
      |||||||||||||||||||||   | |  |||||  |||  || | | ||
seq2  TAAAAAGTAAAAAAAAAAAAAATAGCCAAGTGGTAGTGGTGCATGCCTTT  50

seq1  TAATCCCAACACTTGGGAGGCAGAG--ACAGGAGGATCTGAGTTCGAGGC  95
      |  | |||  |||||||||||||||  | | ||   ||||||||| ||||
seq2  TTTTTCCAGTACTTGGGAGGCAGAGGTAGATGAATCTCTGAGTTCAAGGC  100

seq1  CAG  98
      |||
seq2  CAG  103