BAC Information

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BAC

Clone NameB6Ng01-100D13
Chromosome1 (Build37)
Map Location 128,722,938 - 128,804,654
singlet/doubletdoublet
Overlap geneE030049G20Rik
Upstream geneLypd1
Downstream geneLOC383559, Mgat5, LOC667090, Tmem163, Acmsd, Ccnt2, Ysk4, Rab3gap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100D13.bB6Ng01-100D13.g
ACCDH909782DH909783
length1,1451,098
definitionDH909782|Mus musculus domesticus DNA, BAC clone: B6Ng01-100D13, 5' end.DH909783|Mus musculus domesticus DNA, BAC clone: B6Ng01-100D13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,803,502 - 128,804,654)(128,722,938 - 128,724,052)
sequence
gaattcaggatcatgttcaaatataacatttaagtacaactgaaaaaacc
taggatggaaaacaataaaagataaatgatagagttttttcttctttttc
caacataacaataagaaaggaaggaagatgaatggaggaagttatgaatc
taaagaaagtcaagaaaaagccaggcggtggtggcacaggcctttaatcc
cagcactcaggaggcagaagcaggcggatttctgagttcgagtccagcct
ggtctacagagtgagttccaggacagccagggctacccagagaaaccctg
tctcgaaaaaaccaaaacaaaaaacaaaaaacaacaaaaaaaaaagaaag
tcaagaaaaatttcactcagctataataattgaaccttcattgtattctt
actccatgaacagactgtgaagttttgcagtatttgggctggggagatga
ctaagtggataaagtgcttactatgcaaatttacaaggacctgaatttgg
acccctagaaccaaactctagaagaacatgaaagtcttaactgctagaat
ctctctagcccctcaacaagttcttttaatggcagatggaggtaatgtat
aagcagaaaccatttcgcatgaaatgtatctgtgtcaatcaatgtcacat
acatattctgatagacttaatgttactataacaatagctgaagaaacaat
ggttatatagataatcaccaccctgttttggtggcataaaatatttgagt
cagtttgaattgattatttttctgttgctgtgtgaaataccagaccaaca
gcaagttagtatttaaagaaaaaagatttattttggttcagctccagagg
catatatatagtctcttattgggggaagatacggcaattggctgggaagg
cgcagaggcaggagcaggaagctggctgtcacatttttatttgcatactg
gaagagaaagagagaaccagaaaaggagccaggctatcaactattacaag
ccacaaccctcagtgcatacttctagcagatgtatcctcttaagtctaca
acttcctcaacagtgccatcagctcatgaccaagtgtcaaatattgcctg
cataagggtatgcatgtgtgtgtgaccagttcctgcccttggagc
gaattcagtctgtcaagcctgggtaggcatgaaggcaggagctaaggttt
gcctgacaggaggcagagatcaaatttcatccacacgcaggaagcaaagt
gagcaggaagtggggccaggctataagacttccatgcccgcctccccagt
gatgtattttctccagcagcctctacctcctagaggctccataacctttg
caaacagcttcaccagctgagaccaaggattcaaactagtgagtctatag
ggaagatttcattttcaaaccacagcactgtgtaaaatgccaggtgctat
gacaggaaaaacatcggaaacattagtaacaataagacaggggacagagg
taggcagatccctggaagttttctgtaatgaccaagttccaggccagtga
gagactctgtctcaaaattgaaaaggtagaagatgtctgaggaacaacat
tcaacattcagtacctggatcccctcgcatgtgcactgtacatgcatgca
ctcgtacactcacacatacatggacacacggagagaaagaggaagaggaa
gaggaagaggaagagatggaggaagagaggaagagagagcaaactcattg
attttacagaaccacaatattgaagcaatatttgaatcacattgtataaa
aaatgacccacccctacacatcacagaatggaaattcaaaacaagacgta
ttctagcctacaggtagctcaagaagcatgattctctatgcctagcctct
ctgactttccctgcaagtagtattctcagatctgtgtgaccacagtgact
caactctgctggaacagctcagaggcagccacagacaataagtcaacaaa
caggtgtggctgtcttccaataaaactttatccacacaaaaacacagtgg
gcaggttttcgcttgattgtagcttgtcaattcctgtgctagctgagaga
ggaggctggactttgcttaaaggcatcaaacctctgcctgatcaaagctc
tatctttctccttatcctctcgcactgttcagaattagtaaaccttcgtg
tctggtccttcttcgaaagtggtggagcttcttcagctcccagtcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_128803502_128804654
seq2: B6Ng01-100D13.b_48_1192 (reverse)

seq1  GCTCCAAGGGCAGGAACT-GTGTCACACACATGCATACCCCTTATGCAGC  49
      |||||||||||||||||| ||  |||||||||||||| ||||||||||| 
seq2  GCTCCAAGGGCAGGAACTGGTCACACACACATGCATA-CCCTTATGCAGG  49

seq1  CAATATTTGAACACTTGGTCATGAGCTGATGGCACTGTTTGAGGAAGTTG  99
      ||||||||| ||||||||||||||||||||||||||| ||||||||||||
seq2  CAATATTTG-ACACTTGGTCATGAGCTGATGGCACTG-TTGAGGAAGTTG  97

seq1  TAGAACCTTTAGGAGATAACATCTTGCTAGAAGTATGCCACTGGAGGGTT  149
      ||||  ||| ||  ||| ||||| ||||||||||||| |||| |||||||
seq2  TAGA--CTTAAGAGGAT-ACATC-TGCTAGAAGTATG-CACT-GAGGGTT  141

seq1  GT-GCTTGT-ATAGTTGATAGCCTGGCTCCTTTTCTGGTTCTCTCTTTCT  197
      || |||||| ||||||||||||||||||||||||||||||||||||||| 
seq2  GTGGCTTGTAATAGTTGATAGCCTGGCTCCTTTTCTGGTTCTCTCTTTC-  190

seq1  TCTTCCAGTATGCAAATAAAAATGTGGACAGCCAGCTTCCTGCTCCTGCC  247
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCTTCCAGTATGCAAATAAAAATGT-GACAGCCAGCTTCCTGCTCCTGCC  239

seq1  TCTGCGCCTTCCCAGCCAATTGCCGTATCTTCCCCCAATAAGAGACTATA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCGCCTTCCCAGCCAATTGCCGTATCTTCCCCCAATAAGAGACTATA  289

seq1  TATATGCCTCTGGAGCTGAACCAAAATAAATCTTTTTTCTTTAAATACTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCCTCTGGAGCTGAACCAAAATAAATCTTTTTTCTTTAAATACTA  339

seq1  ACTTGCTGTTGGTCTGGTATTTCACACAGCAACAGAAAAATAATCAATTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTGTTGGTCTGGTATTTCACACAGCAACAGAAAAATAATCAATTC  389

seq1  AAACTGACTCAAATATTTTATGCCACCAAAACAGGGTGGTGATTATCTAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGACTCAAATATTTTATGCCACCAAAACAGGGTGGTGATTATCTAT  439

seq1  ATAACCATTGTTTCTTCAGCTATTGTTATAGTAACATTAAGTCTATCAGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCATTGTTTCTTCAGCTATTGTTATAGTAACATTAAGTCTATCAGA  489

seq1  ATATGTATGTGACATTGATTGACACAGATACATTTCATGCGAAATGGTTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATGTGACATTGATTGACACAGATACATTTCATGCGAAATGGTTT  539

seq1  CTGCTTATACATTACCTCCATCTGCCATTAAAAGAACTTGTTGAGGGGCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTATACATTACCTCCATCTGCCATTAAAAGAACTTGTTGAGGGGCT  589

seq1  AGAGAGATTCTAGCAGTTAAGACTTTCATGTTCTTCTAGAGTTTGGTTCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGATTCTAGCAGTTAAGACTTTCATGTTCTTCTAGAGTTTGGTTCT  639

seq1  AGGGGTCCAAATTCAGGTCCTTGTAAATTTGCATAGTAAGCACTTTATCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTCCAAATTCAGGTCCTTGTAAATTTGCATAGTAAGCACTTTATCC  689

seq1  ACTTAGTCATCTCCCCAGCCCAAATACTGCAAAACTTCACAGTCTGTTCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGTCATCTCCCCAGCCCAAATACTGCAAAACTTCACAGTCTGTTCA  739

seq1  TGGAGTAAGAATACAATGAAGGTTCAATTATTATAGCTGAGTGAAATTTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTAAGAATACAATGAAGGTTCAATTATTATAGCTGAGTGAAATTTT  789

seq1  TCTTGACTTTCTTTTTTTTTTGTTGTTTTTTGTTTTTTGTTTTGGTTTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGACTTTCTTTTTTTTTTGTTGTTTTTTGTTTTTTGTTTTGGTTTTT  839

seq1  TCGAGACAGGGTTTCTCTGGGTAGCCCTGGCTGTCCTGGAACTCACTCTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGACAGGGTTTCTCTGGGTAGCCCTGGCTGTCCTGGAACTCACTCTG  889

seq1  TAGACCAGGCTGGACTCGAACTCAGAAATCCGCCTGCTTCTGCCTCCTGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCAGGCTGGACTCGAACTCAGAAATCCGCCTGCTTCTGCCTCCTGA  939

seq1  GTGCTGGGATTAAAGGCCTGTGCCACCACCGCCTGGCTTTTTCTTGACTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGGATTAAAGGCCTGTGCCACCACCGCCTGGCTTTTTCTTGACTT  989

seq1  TCTTTAGATTCATAACTTCCTCCATTCATCTTCCTTCCTTTCTTATTGTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGATTCATAACTTCCTCCATTCATCTTCCTTCCTTTCTTATTGTT  1039

seq1  ATGTTGGAAAAAGAAGAAAAAACTCTATCATTTATCTTTTATTGTTTTCC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGGAAAAAGAAGAAAAAACTCTATCATTTATCTTTTATTGTTTTCC  1089

seq1  ATCCTAGGTTTTTTCAGTTGTACTTAAATGTTATATTTGAACATGATCCT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAGGTTTTTTCAGTTGTACTTAAATGTTATATTTGAACATGATCCT  1139

seq1  GAATTC  1153
      ||||||
seq2  GAATTC  1145

seq1: chr1_128722938_128724052
seq2: B6Ng01-100D13.g_69_1166

seq1  GAATTCAGTCTGTCAAGCCTGGGTAGGCATGAAGGCAGGAGCTAAGGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCTGTCAAGCCTGGGTAGGCATGAAGGCAGGAGCTAAGGTTT  50

seq1  GCCTGACAGGAGGCAGAGATCAAATTTCATCCACACGCAGGAAGCAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGACAGGAGGCAGAGATCAAATTTCATCCACACGCAGGAAGCAAAGT  100

seq1  GAGCAGGAAGTGGGGCCAGGCTATAAGACTTCCATGCCCGCCTCCCCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGAAGTGGGGCCAGGCTATAAGACTTCCATGCCCGCCTCCCCAGT  150

seq1  GATGTATTTTCTCCAGCAGCCTCTACCTCCTAGAGGCTCCATAACCTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTATTTTCTCCAGCAGCCTCTACCTCCTAGAGGCTCCATAACCTTTG  200

seq1  CAAACAGCTTCACCAGCTGAGACCAAGGATTCAAACTAGTGAGTCTATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGCTTCACCAGCTGAGACCAAGGATTCAAACTAGTGAGTCTATAG  250

seq1  GGAAGATTTCATTTTCAAACCACAGCACTGTGTAAAATGCCAGGTGCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGATTTCATTTTCAAACCACAGCACTGTGTAAAATGCCAGGTGCTAT  300

seq1  GACAGGAAAAACATCGGAAACATTAGTAACAATAAGACAGGGGACAGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGAAAAACATCGGAAACATTAGTAACAATAAGACAGGGGACAGAGG  350

seq1  TAGGCAGATCCCTGGAAGTTTTCTGTAATGACCAAGTTCCAGGCCAGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAGATCCCTGGAAGTTTTCTGTAATGACCAAGTTCCAGGCCAGTGA  400

seq1  GAGACTCTGTCTCAAAATTGAAAAGGTAGAAGATGTCTGAGGAACAACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTCTGTCTCAAAATTGAAAAGGTAGAAGATGTCTGAGGAACAACAT  450

seq1  TCAACATTCAGTACCTGGATCCCCTCGCATGTGCACTGTACATGCATGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACATTCAGTACCTGGATCCCCTCGCATGTGCACTGTACATGCATGCA  500

seq1  CTCGTACACTCACACATACATGGACACACGGAGAGAAAGAGGAAGAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTACACTCACACATACATGGACACACGGAGAGAAAGAGGAAGAGGAA  550

seq1  GAGGAAGAGGAAGAGATGGAGGAAGAGAGGAAGAGAGAGCAAACTCATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGAGGAAGAGATGGAGGAAGAGAGGAAGAGAGAGCAAACTCATTG  600

seq1  ATTTTACAGAACCACAATATTGAAGCAATATTTGAATCACATTGTATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACAGAACCACAATATTGAAGCAATATTTGAATCACATTGTATAAA  650

seq1  AAATGACCCACCCCTACACATCACAGAATGGAAATTCAAAACAAGACGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACCCACCCCTACACATCACAGAATGGAAATTCAAAACAAGACGTA  700

seq1  TTCTAGCCTACAGGTAGCTCAAGAAGCATGATTCTCTATGCCTAGCCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGCCTACAGGTAGCTCAAGAAGCATGATTCTCTATGCCTAGCCTCT  750

seq1  CTGACTTTCCCTGCAAGTAGTATTCTCAGATCTGTGTGACCACAGTGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTTCCCTGCAAGTAGTATTCTCAGATCTGTGTGACCACAGTGACT  800

seq1  CAACTCTGCTGGAACAGCTCAGAGGCAGCCACAGACAATAAGTCAACAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCTGCTGGAACAGCTCAGAGGCAGCCACAGACAATAAGTCAACAAA  850

seq1  CAGGTGTGGCTGTCTTCCAATAAAACTTTATCCACACAAAAACACAGTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGTGGCTGTCTTCCAATAAAACTTTATCCACACAAAAACACAGTGG  900

seq1  GCAGGTTTTCGCCTGATTTGTAGCTTGTCAATTCCTGTGCTAAGCTGAGA  950
      |||||||||||| ||| |||||||||||||||||||||||| ||||||||
seq2  GCAGGTTTTCGCTTGA-TTGTAGCTTGTCAATTCCTGTGCT-AGCTGAGA  948

seq1  GAAGGAGGCTGGACTTTGCTTAAAGGCAATCAAACCACCTGCCTGATCAA  1000
      | ||||||||||||||||||||||||| ||||||||  ||||||||||||
seq2  G-AGGAGGCTGGACTTTGCTTAAAGGC-ATCAAACC-TCTGCCTGATCAA  995

seq1  AGCTCTATCTTTCTCTTTATCCTCCTCGCCACTGTTCAAGGATATTAGTA  1050
      ||||||||||||||| ||||||| |||| |||||||||  || |||||| 
seq2  AGCTCTATCTTTCTCCTTATCCT-CTCG-CACTGTTCA--GA-ATTAGT-  1039

seq1  AAACCTTCGTGTCTTGGTCCCTTCTTCAGAAAGGTGGTTGGAGCTCCTTC  1100
      ||||||||||||| |||| |||||||| |||| |||| ||||||| ||| 
seq2  AAACCTTCGTGTC-TGGT-CCTTCTTC-GAAA-GTGG-TGGAGCTTCTT-  1083

seq1  CAGCTCCCAGCCATG  1115
      |||||||||| ||||
seq2  CAGCTCCCAGTCATG  1098