BAC Information

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BAC

Clone NameB6Ng01-100G17
Chromosome1 (Build37)10 (Build37)
Map Location 149,216,330 - 149,216,8564,165,379 - 4,165,667
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC383571, B830045N13Rik, LOC100043240
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100G17.bB6Ng01-100G17.g
ACCDH909924DH909925
length768745
definitionDH909924|Mus musculus domesticus DNA, BAC clone: B6Ng01-100G17, 5' end.DH909925|Mus musculus domesticus DNA, BAC clone: B6Ng01-100G17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(149,216,330 - 149,216,856)(4,165,379 - 4,165,667)
sequence
gaattctacctaagtggatcctggcttggcatcgggaaagaatgggctgg
gataggtgccctcattgtggtccttgttttggcatgcatgttgtgtgtat
ggtgtatgtgttggttgtggaatgcccaggtccacactgccgcatggtgg
tgcaagcttttgccacagtgaaagcagggcagtcacctcagagttggctt
gctgccatgaagaatgaacaatgaagccattgctccatagggttgtaagg
ctaagcactgcacagaggttagtctggaagctgtttgacaatctctggga
ggtatgtctgattgcatgagggttgagtgtcctagtgtccttcccccagg
aaatatggcatgggagcaggtcagtgttgatctgggtaaaaacctgtgag
cctaagagtcaatcctgtacatggcccctatttctgcacactggggatca
gacctctattttcacccatggagcttgcttcaaaagaatataaaaggggg
gattgtggaaagccactccagactccctggccagctggacagaaatctgt
gccaggcagtaaacgagcccatatttggtggatggctcgcccttaatccc
tgattggctgagcaagcctgcctggtgaggtgatgtgacctgtggtgatt
ggttgaggcatggttgtggcttgagtggataaaaatgcttgtaccccgag
gctcgatgctcgaggagttgaagagaatctgcctgagtaaactgcattaa
gaaaaacaggtggttgca
gaattcttgatctttccaagactttttatcatgaatgggtgttgaatttt
ttcaaatgctttctcagcatctaatgagatgatcatgtggtttttgtctt
tgagtttgtttatatagtggattatgttgatggatttccctatattgaat
catgcctctacacccctgggatgaagtctactttatcatgttggatgatc
cttttgatctgtacttggattcagttggtgagaattttcttgagtatttt
tgcatcgatattcataagagaaattgttctgaagttctctttctctgttg
agtctttgtgtggtttaggtataaaagtgtttgtggcttcatagaatgaa
ttgggtagagtatcttctgtttctatgttgtagaatagtttgatgagttg
tggaattaggtcttctttaaatgtctgatggaactctgcactaaacccat
ctggtcttgggcttttttgcttggtagactattaatgactctttctattt
cttttgggaatatgggactgtttagattgttaatctgatcctgattttac
cttggtaactttttatgtctctagacaattgttttatttcatccaagttt
tccagttttgttgaatatagccttttgtagtaggaactgatgtttttttg
tatttcctcagattctgttgtgatgtcttccttttcatttctgatttttg
tcattaggcaaatcctttttctctaacagggcaagaaaaagaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_149216330_149216856
seq2: B6Ng01-100G17.b_44_570

seq1  GAATTCTACCTAAGTGGATCCTGGCTTGGCATCGGGAAAGAATGGGCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACCTAAGTGGATCCTGGCTTGGCATCGGGAAAGAATGGGCTGG  50

seq1  GATAGGTGCCCTCATTGTGGTCCTTGTTTTGGCATGCATGTTGTGTGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGTGCCCTCATTGTGGTCCTTGTTTTGGCATGCATGTTGTGTGTAT  100

seq1  GGTGTATGTGTTGGTTGTGGAATGCCCAGGTCCACACTGCCGCATGGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTATGTGTTGGTTGTGGAATGCCCAGGTCCACACTGCCGCATGGTGG  150

seq1  TGCAAGCTTTTGCCACAGTGAAAGCAGGGCAGTCACCTCAGAGTTGGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGCTTTTGCCACAGTGAAAGCAGGGCAGTCACCTCAGAGTTGGCTT  200

seq1  GCTGCCATGAAGAATGAACAATGAAGCCATTGCTCCATAGGGTTGTAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCATGAAGAATGAACAATGAAGCCATTGCTCCATAGGGTTGTAAGG  250

seq1  CTAAGCACTGCACAGAGGTTAGTCTGGAAGCTGTTTGACAATCTCTGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCACTGCACAGAGGTTAGTCTGGAAGCTGTTTGACAATCTCTGGGA  300

seq1  GGTATGTCTGATTGCATGAGGGTTGAGTGTCCTAGTGTCCTTCCCCCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGTCTGATTGCATGAGGGTTGAGTGTCCTAGTGTCCTTCCCCCAGG  350

seq1  AAATATGGCATGGGAGCAGGTCAGTGTTGATCTGGGTAAAAACCTGTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGGCATGGGAGCAGGTCAGTGTTGATCTGGGTAAAAACCTGTGAG  400

seq1  CCTAAGAGTCAATCCTGTACATGGCCCCTATTTCTGCACACTGGGGATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGAGTCAATCCTGTACATGGCCCCTATTTCTGCACACTGGGGATCA  450

seq1  GACCTCTATTTTCACCCATGGAGCTTGCTTCAAAAGAATATAAAAGGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCTATTTTCACCCATGGAGCTTGCTTCAAAAGAATATAAAAGGGGG  500

seq1  GATTGTGGAAAGCCACTCCAGACTCCC  527
      |||||||||||||||||||||||||||
seq2  GATTGTGGAAAGCCACTCCAGACTCCC  527

seq1: chr10_4165379_4165667
seq2: B6Ng01-100G17.g_68_357 (reverse)

seq1  AGAGAACTTCAGACCAATTTCCCCCATGAATAACGATGCAAAAATACTCA  50
      ||||||||||||| ||||||| |  ||||||| |||||||||||||||||
seq2  AGAGAACTTCAGAACAATTTCTCTTATGAATATCGATGCAAAAATACTCA  50

seq1  ATAAAATTTTTGCTAACCGAACACAAAAACACATCAAAA-TACCATCCAA  99
      | |||||| |  | ||| |||  |||  ||| |||||||  | |||||||
seq2  AGAAAATTCTCACCAACTGAATCCAAGTACAGATCAAAAGGATCATCCAA  100

seq1  CCTGACCAAGTAGATCTCATTCCAGCG--ATTCAGGGATAGTTTAATATA  147
      | |||  |||||||  |||| |||| |   |  ||| ||  || ||||||
seq2  CATGATAAAGTAGACTTCATCCCAGGGGTGTAGAGGCATGATTCAATATA  150

seq1  CCGAAATCCATCAACATAATCCACTATATAAACAAACACAAAGACAGAAA  197
        ||||||||||||||||||||||||||||||||||| |||||||| |||
seq2  GGGAAATCCATCAACATAATCCACTATATAAACAAACTCAAAGACAAAAA  200

seq1  CCACATGATCATCTCATCAGATGCTGAGAAAGCATTTGACAAAATCCAAC  247
      ||||||||||||||||| ||||||||||||||||||||| ||||| ||||
seq2  CCACATGATCATCTCATTAGATGCTGAGAAAGCATTTGAAAAAATTCAAC  250

seq1  ACCCATTCATGATAAAAAAAATCTTGGAAAGATCAGGAATTC  289
      |||||||||||||  ||||| |||||||||||||| ||||||
seq2  ACCCATTCATGAT--AAAAAGTCTTGGAAAGATCAAGAATTC  290