BAC Information

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BAC

Clone NameB6Ng01-100H11
Chromosome1 (Build37)
Map Location 31,306,870 - 31,481,271
singlet/doubletdoublet
Overlap geneEG226957, EG624262
Upstream geneEG624138, LOC100040699, Phf3, EG638995, Ptp4a1, EG435615, LOC669402, EG435616, 4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik
Downstream geneLOC624275, LOC666056, LOC100041238, Khdrbs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100H11.bB6Ng01-100H11.g
ACCDH909958DH909959
length915854
definitionDH909958|Mus musculus domesticus DNA, BAC clone: B6Ng01-100H11, 5' end.DH909959|Mus musculus domesticus DNA, BAC clone: B6Ng01-100H11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,306,870 - 31,307,536)(31,480,418 - 31,481,271)
sequence
gaattctcacctgaggaatactgaatggctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagagaaatgcaaatcaaaacaaccctgagaa
taacttttaaagtaggcatctattaacttaggaaatatggctagcaaatg
acaaatcagaccctgtgaaatgaaagaagtctctgtgggatgccctgttt
tattctctctggcccctacaggagaaattctctaccctctgtattgtctc
tgtttggtgcaccaatcacgtgtcaaatcatgtatgttttttgtttcatt
gtctgaatgattgtttcattgtctgaatgactgactgttttatgttttat
gttgaaaaaaaatggataaaactttacctgctgattcactctcagtttgc
acaatggaggctgaaagaggcccctcactttaaccaaaaatcaagcacag
caggagaggtcctgctgaaaaacttgtttttaaagaaaatgagtctacaa
cctcttaattctaaggcaaataagctgatagttgtttttccttaaaaagt
ctcggcaattttgtgattattgtgtttagcaaatgacaaaatgtgttttt
atcttataattatagctataaaaagtaaaattctttgattgatctaaatt
cataagattcgtgtagccacttcatttggtttttaattgatcttaaaggt
ataaatataatctgcatatcttggtcatagaaaattggcttataagttat
ttgagtatgattaagaaggtataacactggttacaaagttagcttaagta
gtaactcagggctagcgtcattttcaaacaaaagcacctggcataaacca
gcccagaaaactagtcctctaaagatacttctaaattgagataatatttt
atgtaattcttatcc
gaattccactctttgttgttgttgttgttgttgttgttgttgcccacttc
taagaaggaccaaattatccatactttggtcttccttcttcttgagcttc
atttggtctgtgaattgtatcttgggtattccaagcttcttggctaataa
ccatttatcactgagtgtataccatgtgtgttcttttgtttcctcactca
gaaacttaaagaaacagatttagtgtaatccctaccaaaattacaaggat
cttgcccacataactatgaaaaaaatctaatatttataaggaaacccatc
acctggtatagttaagatgaaccaataaaattttcatatatataaaaatt
gttattacctggaaaactaatagaataatgtacagatgatacatatgaat
tgttttttgttttattttgttttttattagatattttctttatttatact
tcaaatgtgtttccctttctgggtctcaacttcagaaactccctatccca
tcccttctccccctgcctctatggggtgctcccccacccacccattcctg
tcctcctgtcctggtactcccctatattggggcattgaacaccctcaagc
ccaagagcctctcctcccactgatgatcaacaagtccatcctctgccata
tatgtggccagcaccatgtatattctttggttggtggtccagtgcccagg
agctctggggggggggaggtctggactgttgatactgttgcttcctccat
gggagctgcaaccctcttagctcctttcagtcccttctccaactccttca
ttgggacccacgagctcaatccaacggtaggatttgttttctctctagtg
atac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_31306870_31307536
seq2: B6Ng01-100H11.b_45_711

seq1  GAATTCTCACCTGAGGAATACTGAATGGCTGAGAAGCACCTGAAAAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCTGAGGAATACTGAATGGCTGAGAAGCACCTGAAAAAATG  50

seq1  TTCAGCATCCTTAATCATCAGAGAAATGCAAATCAAAACAACCCTGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCATCCTTAATCATCAGAGAAATGCAAATCAAAACAACCCTGAGAA  100

seq1  TAACTTTTAAAGTAGGCATCTATTAACTTAGGAAATATGGCTAGCAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTTAAAGTAGGCATCTATTAACTTAGGAAATATGGCTAGCAAATG  150

seq1  ACAAATCAGACCCTGTGAAATGAAAGAAGTCTCTGTGGGATGCCCTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCAGACCCTGTGAAATGAAAGAAGTCTCTGTGGGATGCCCTGTTT  200

seq1  TATTCTCTCTGGCCCCTACAGGAGAAATTCTCTACCCTCTGTATTGTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCTCTGGCCCCTACAGGAGAAATTCTCTACCCTCTGTATTGTCTC  250

seq1  TGTTTGGTGCACCAATCACGTGTCAAATCATGTATGTTTTTTGTTTCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGTGCACCAATCACGTGTCAAATCATGTATGTTTTTTGTTTCATT  300

seq1  GTCTGAATGATTGTTTCATTGTCTGAATGACTGACTGTTTTATGTTTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAATGATTGTTTCATTGTCTGAATGACTGACTGTTTTATGTTTTAT  350

seq1  GTTGAAAAAAAATGGATAAAACTTTACCTGCTGATTCACTCTCAGTTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAAAAAAATGGATAAAACTTTACCTGCTGATTCACTCTCAGTTTGC  400

seq1  ACAATGGAGGCTGAAAGAGGCCCCTCACTTTAACCAAAAATCAAGCACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGGAGGCTGAAAGAGGCCCCTCACTTTAACCAAAAATCAAGCACAG  450

seq1  CAGGAGAGGTCCTGCTGAAAAACTTGTTTTTAAAGAAAATGAGTCTACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAGGTCCTGCTGAAAAACTTGTTTTTAAAGAAAATGAGTCTACAA  500

seq1  CCTCTTAATTCTAAGGCAAATAAGCTGATAGTTGTTTTTCCTTAAAAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTAATTCTAAGGCAAATAAGCTGATAGTTGTTTTTCCTTAAAAAGT  550

seq1  CTCGGCAATTTTGTGATTATTGTGTTTAGCAAATGACAAAATGTGTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGCAATTTTGTGATTATTGTGTTTAGCAAATGACAAAATGTGTTTTT  600

seq1  ATCTTATAATTATAGCTATAAAAAGTAAAATTCTTTGATTGATCTAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTATAATTATAGCTATAAAAAGTAAAATTCTTTGATTGATCTAAATT  650

seq1  CATAAGATTCGTGTAGC  667
      |||||||||||||||||
seq2  CATAAGATTCGTGTAGC  667

seq1: chr1_31480418_31481271
seq2: B6Ng01-100H11.g_68_921 (reverse)

seq1  GTATCACTAGAGAGATAAACAAATCCTACCGTTGGATTGAGCTCGTGGGT  50
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTATCACTAGAGAGA-AAACAAATCCTACCGTTGGATTGAGCTCGTGGGT  49

seq1  CCCAAATGAAGGAGTTGGAGAAGGGACTG-AAGGAGCTGAGAGGGTTGCA  99
      ||| ||||||||||||||||||||||||| |||||||| |||||||||||
seq2  CCC-AATGAAGGAGTTGGAGAAGGGACTGAAAGGAGCTAAGAGGGTTGCA  98

seq1  GCT-CCATGGAGGAAGCAACAGTATCAACAGTCCAGACCTCCCCCCCCCC  148
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCATGGAGGAAGCAACAGTATCAACAGTCCAGACCTCCCCCCCCCC  148

seq1  AGAGCTCCTGGGCACTGGACCACCAACCAAAGAATATACATGGTGCTGGC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCCTGGGCACTGGACCACCAACCAAAGAATATACATGGTGCTGGC  198

seq1  CACATATATGGCAGAGGATGGACTTGTTGATCATCAGTGGGAGGAGAGGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATATGGCAGAGGATGGACTTGTTGATCATCAGTGGGAGGAGAGGC  248

seq1  TCTTGGGCTTGAGGGTGTTCAATGCCCCAATATAGGGGAGTACCAGGACA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGCTTGAGGGTGTTCAATGCCCCAATATAGGGGAGTACCAGGACA  298

seq1  GGAGGACAGGAATGGGTGGGTGGGGGAGCACCCCATAGAGGCAGGGGGAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGACAGGAATGGGTGGGTGGGGGAGCACCCCATAGAGGCAGGGGGAG  348

seq1  AAGGGATGGGATAGGGAGTTTCTGAAGTTGAGACCCAGAAAGGGAAACAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGATGGGATAGGGAGTTTCTGAAGTTGAGACCCAGAAAGGGAAACAC  398

seq1  ATTTGAAGTATAAATAAAGAAAATATCTAATAAAAAACAAAATAAAACAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAGTATAAATAAAGAAAATATCTAATAAAAAACAAAATAAAACAA  448

seq1  AAAACAATTCATATGTATCATCTGTACATTATTCTATTAGTTTTCCAGGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAATTCATATGTATCATCTGTACATTATTCTATTAGTTTTCCAGGT  498

seq1  AATAACAATTTTTATATATATGAAAATTTTATTGGTTCATCTTAACTATA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAATTTTTATATATATGAAAATTTTATTGGTTCATCTTAACTATA  548

seq1  CCAGGTGATGGGTTTCCTTATAAATATTAGATTTTTTTCATAGTTATGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTGATGGGTTTCCTTATAAATATTAGATTTTTTTCATAGTTATGTG  598

seq1  GGCAAGATCCTTGTAATTTTGGTAGGGATTACACTAAATCTGTTTCTTTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGATCCTTGTAATTTTGGTAGGGATTACACTAAATCTGTTTCTTTA  648

seq1  AGTTTCTGAGTGAGGAAACAAAAGAACACACATGGTATACACTCAGTGAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTGAGTGAGGAAACAAAAGAACACACATGGTATACACTCAGTGAT  698

seq1  AAATGGTTATTAGCCAAGAAGCTTGGAATACCCAAGATACAATTCACAGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGTTATTAGCCAAGAAGCTTGGAATACCCAAGATACAATTCACAGA  748

seq1  CCAAATGAAGCTCAAGAAGAAGGAAGACCAAAGTATGGATAATTTGGTCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGAAGCTCAAGAAGAAGGAAGACCAAAGTATGGATAATTTGGTCC  798

seq1  TTCTTAGAAGTGGGCAACAACAACAACAACAACAACAACAACAAAGAGTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGAAGTGGGCAACAACAACAACAACAACAACAACAACAAAGAGTG  848

seq1  GAATTC  854
      ||||||
seq2  GAATTC  854