BAC Information

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BAC

Clone NameB6Ng01-100I12
Chromosome1 (Build37)
Map Location 183,874,561 - 184,048,956
singlet/doubletdoublet
Overlap geneEnah
Upstream geneTmem63a, Ephx1, 9130409I23Rik, EG625597, Fgfr3-ps, Nvl, Cnih4, Wdr26, LOC100042363, LOC666519, Cnih3, Ccdc121, A230079K17Rik, Lbr, EG433384
Downstream geneSrp9, EG625823, Degs1, 1700047M11Rik, Fbxo28, LOC435657, ENSMUSG00000073482, Trp53bp2, Capn2, LOC666624, Capn8, 4922505E12Rik, Susd4, Tlr5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100I12.bB6Ng01-100I12.g
ACCDH910005DH910006
length1,1731,071
definitionDH910005|Mus musculus domesticus DNA, BAC clone: B6Ng01-100I12, 5' end.DH910006|Mus musculus domesticus DNA, BAC clone: B6Ng01-100I12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(184,047,780 - 184,048,956)(183,874,561 - 183,875,508)
sequence
gaattcactgtagaccaggctggcctcgaactcagaaacttcgcctgcct
cttgcctcccaagtactgggattaaagacatgcgccaccacacccgccag
ctctcttctcttattccatccacattctatgtgatccaacccactctagg
aaattcattcacttcagactatttctagactgaagtcactacttatctgt
agttatggcccctcgttatgcccttactcttgctattatactgaggatgg
ggctttcctccgtcttcacagttaatatcgtcacaaatcttacctgcatc
cggaaatcacattacagtgttctataatgaggagagcttggggggccgct
tctaaaaactttacaagaaacattgggccaggacacggaagtaggctcca
ggcaagaatttgactttaggttaagaccaggaaatagtctcagataagaa
tattaacattgggctaatacaaagctcaaggtaacctcagcagaagaatg
tggcatttctgttatcttggacattcagataagccactggaaacattgat
caagggactttgtttattgtcttgtttgtcccttgactatttgtgtttat
tgccttgtttgttccttaacctagaactgaccatattatttgcacgtgct
taaaatggtataaaagcagactgggcaaaattaaacctgcttcagcctca
gaacaggctgggtcatgctacagtgttgtctagtggtcatatttgcgttt
tgatcctcgttccctccccggagaatccgtcgactgactgagctggcttg
gtcattataagatggtcatttctgttccagagttttgttttgccctcagg
aaaattgccctggctccatggtagccttccctgcctcccttaggcattgg
aatcccaaggtagcagccattagttttactactgtgctctaggatgcctg
gattagtactgagtctagacctcttctctgaactgccaggtctgggctaa
ccccagacttgaattgaaagattaaaacaggttttcagtaaatcatataa
atgtctaggcaaagaatgtaattacctgattccttccgacttaggacgtt
ggcagatttattgacacttcatactcgtgattgacagccaggatttctgt
aaacttcagtccgttcttcttac
gaattccaggacagccagggctttgtacagagaccctatcctgactagtt
ttatgccaactagacacaagctagagttatctgaaaggagggaacctcag
ttttgaaaatacttctgtaatatacagctataaggtatttatttaattag
tggttaattgggggtgggtccagcccattttgggtcgggccaaccctgag
taggtggttctgggctctataagaaagcaggttgagcaggccatgtggag
gaggccagtaagcagcacccctccatggcctctgcctcagctcctgcctc
caggttcctagcccacttgaactcctgccttgatgtccttcggttatgaa
tagtgataaacatcaaataagcccttccctttctaagtagctttggttat
gattttctcacagtaagagtgacccgatctgagaccttatcttaaaaaag
gcaaaaaagcgctaggtgtggtgctttaatcccagcactcgggaggcaga
ggcaggcggatttctgaggccagcctggtctacaaagtgagttccaggac
agacggggctacagagaaaccctgtctggaaaaaacaaaaaacaaacaaa
caaacaaaaaaaggcaaaagcaaaaacaaagacaaagacctgaacacgtt
cagaaaacaccactcctgtgttttttcttgtgaatcatcttagaaattaa
actcacagaaatagcaagtctacctcagaagaaccattttttagtaactt
tacacaaatagcatgctacatttgctaaatccatttcccaatcaccactt
tgtgcagtatttacactgccttgcagatatttccagccaagttttgtagt
ctctgatgaagtaaaagaacatataagaccaagctttcaatcattccatt
gttcctttattcctctattatcctgtaacacagtatctatgtacaataca
aaaaatctgtccactgagcttttatctagactattaattttagaatattt
gggattaataagcatacaacatctgatatgaaatcaacttcaaagatcta
ccatcgatatttaaactgatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_184047780_184048956
seq2: B6Ng01-100I12.b_45_1217 (reverse)

seq1  GTAAGAAGAACGAGACTTGAAG-TTACAGAATTCCTGGCTGTCAATCACA  49
      |||||||||||| ||| ||||| |||||||| ||||||||||||||||| 
seq2  GTAAGAAGAACG-GAC-TGAAGTTTACAGAAATCCTGGCTGTCAATCAC-  47

seq1  GGGTATG-AGTGACAAT-AATCTGCCAACGCTCCTAAGTCGGAAGGAATC  97
      | ||||| |||| |||| |||||||||||| |||||||||||||||||||
seq2  GAGTATGAAGTGTCAATAAATCTGCCAACG-TCCTAAGTCGGAAGGAATC  96

seq1  AGGT-ATTACATCTATTGCTTAGACATTATTATGATTTACTGAAAAACTG  146
      |||| |||||||   |||| ||||||||  |||||||||||||||| |||
seq2  AGGTAATTACATTCTTTGCCTAGACATTTATATGATTTACTGAAAACCTG  146

seq1  TTTTAATCTCTCAAATTCAAGTCTGGGGTTAGCCCAGGACCTGGCAGTTC  196
      ||||||||| || ||||||||||||||||||||||| |||||||||||||
seq2  TTTTAATCTTTC-AATTCAAGTCTGGGGTTAGCCCA-GACCTGGCAGTTC  194

seq1  AGAGAAGAGGTCTAGACTCAGTACTAATCCAGGCATCCTAGAGCACAGTA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGAGGTCTAGACTCAGTACTAATCCAGGCATCCTAGAGCACAGTA  244

seq1  GGTAAAACTAATGGCTGCTACCTTGGGATTCCAATGCCTAAGGGAGGCAG  296
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -GTAAAACTAATGGCTGCTACCTTGGGATTCCAATGCCTAAGGGAGGCAG  293

seq1  GGAAGGCTACCATGGAGCCAGGGCAATTTTCCCTGAGGGCAAAACAAAAC  346
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGAAGGCTACCATGGAGCCAGGGCAATTTT-CCTGAGGGCAAAACAAAAC  342

seq1  TCTGGAACAGAAATGACCATCTTATAATGACCAAGCCAGCTCAGTCAGTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAACAGAAATGACCATCTTATAATGACCAAGCCAGCTCAGTCAGTC  392

seq1  GACGGATTCTCCGGGGAGGGAACGAGGATCAAAACGCAAATATGACCACT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGATTCTCCGGGGAGGGAACGAGGATCAAAACGCAAATATGACCACT  442

seq1  AGACAACACTGTAGCATGACCCAGCCTGTTCTGAGGCTGAAGCAGGTTTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACACTGTAGCATGACCCAGCCTGTTCTGAGGCTGAAGCAGGTTTA  492

seq1  ATTTTGCCCAGTCTGCTTTTATACCATTTTAAGCACGTGCAAATAATATG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCCCAGTCTGCTTTTATACCATTTTAAGCACGTGCAAATAATATG  542

seq1  GTCAGTTCTAGGTTAAGGAACAAACAAGGCAATAAACACAAATAGTCAAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTTCTAGGTTAAGGAACAAACAAGGCAATAAACACAAATAGTCAAG  592

seq1  GGACAAACAAGACAATAAACAAAGTCCCTTGATCAATGTTTCCAGTGGCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAACAAGACAATAAACAAAGTCCCTTGATCAATGTTTCCAGTGGCT  642

seq1  TATCTGAATGTCCAAGATAACAGAAATGCCACATTCTTCTGCTGAGGTTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGAATGTCCAAGATAACAGAAATGCCACATTCTTCTGCTGAGGTTA  692

seq1  CCTTGAGCTTTGTATTAGCCCAATGTTAATATTCTTATCTGAGACTATTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAGCTTTGTATTAGCCCAATGTTAATATTCTTATCTGAGACTATTT  742

seq1  CCTGGTCTTAACCTAAAGTCAAATTCTTGCCTGGAGCCTACTTCCGTGTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCTTAACCTAAAGTCAAATTCTTGCCTGGAGCCTACTTCCGTGTC  792

seq1  CTGGCCCAATGTTTCTTGTAAAGTTTTTAGAAGCGGCCCCCCAAGCTCTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCCAATGTTTCTTGTAAAGTTTTTAGAAGCGGCCCCCCAAGCTCTC  842

seq1  CTCATTATAGAACACTGTAATGTGATTTCCGGATGCAGGTAAGATTTGTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTATAGAACACTGTAATGTGATTTCCGGATGCAGGTAAGATTTGTG  892

seq1  ACGATATTAACTGTGAAGACGGAGGAAAGCCCCATCCTCAGTATAATAGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATATTAACTGTGAAGACGGAGGAAAGCCCCATCCTCAGTATAATAGC  942

seq1  AAGAGTAAGGGCATAACGAGGGGCCATAACTACAGATAAGTAGTGACTTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTAAGGGCATAACGAGGGGCCATAACTACAGATAAGTAGTGACTTC  992

seq1  AGTCTAGAAATAGTCTGAAGTGAATGAATTTCCTAGAGTGGGTTGGATCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAGAAATAGTCTGAAGTGAATGAATTTCCTAGAGTGGGTTGGATCA  1042

seq1  CATAGAATGTGGATGGAATAAGAGAAGAGAGCTGGCGGGTGTGGTGGCGC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAATGTGGATGGAATAAGAGAAGAGAGCTGGCGGGTGTGGTGGCGC  1092

seq1  ATGTCTTTAATCCCAGTACTTGGGAGGCAAGAGGCAGGCGAAGTTTCTGA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTTAATCCCAGTACTTGGGAGGCAAGAGGCAGGCGAAGTTTCTGA  1142

seq1  GTTCGAGGCCAGCCTGGTCTACAGTGAATTC  1177
      |||||||||||||||||||||||||||||||
seq2  GTTCGAGGCCAGCCTGGTCTACAGTGAATTC  1173

seq1: chr1_183874561_183875508
seq2: B6Ng01-100I12.g_209_1138

seq1  TTTAATTAGTGGTTAATTGGGGGTGGGTCCAGCCCATTTTGGGTCGGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTAGTGGTTAATTGGGGGTGGGTCCAGCCCATTTTGGGTCGGGCC  50

seq1  AACCCTGAGTAGGTGGTTCTGGGCTCTATAAGAAAGCAGGTTGAGCAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGAGTAGGTGGTTCTGGGCTCTATAAGAAAGCAGGTTGAGCAGGC  100

seq1  CATGTGGAGGAGGCCAGTAAGCAGCACCCCTCCATGGCCTCTGCCTCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGGAGGAGGCCAGTAAGCAGCACCCCTCCATGGCCTCTGCCTCAGC  150

seq1  TCCTGCCTCCAGGTTCCTAGCCCACTTGAACTCCTGCCTTGATGTCCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCTCCAGGTTCCTAGCCCACTTGAACTCCTGCCTTGATGTCCTTC  200

seq1  GGTTATGAATAGTGATAAACATCAAATAAGCCCTTCCCTTTCTAAGTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATGAATAGTGATAAACATCAAATAAGCCCTTCCCTTTCTAAGTAGC  250

seq1  TTTGGTTATGATTTTCTCACAGTAAGAGTGACCCGATCTGAGACCTTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTATGATTTTCTCACAGTAAGAGTGACCCGATCTGAGACCTTATC  300

seq1  TTAAAAAAGGCAAAAAAGCGCTAGGTGTGGTGCTTTAATCCCAGCACTCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAGGCAAAAAAGCGCTAGGTGTGGTGCTTTAATCCCAGCACTCG  350

seq1  GGAGGCAGAGGCAGGCGGATTTCTGAGGCCAGCCTGGTCTACAAAGTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGAGGCAGGCGGATTTCTGAGGCCAGCCTGGTCTACAAAGTGAG  400

seq1  TTCCAGGACAGACGGGGCTACAGAGAAACCCTGTCTGGAAAAAACAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGACAGACGGGGCTACAGAGAAACCCTGTCTGGAAAAAACAAAAA  450

seq1  ACAAACAAACAAACAAAAAAAGGCAAAAGCAAAAACAAAGACAAAGACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAACAAACAAAAAAAGGCAAAAGCAAAAACAAAGACAAAGACCT  500

seq1  GAACACGTTCAGAAAACACCACTCCTGTGTTTTTTCTTGTGAATCATCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACGTTCAGAAAACACCACTCCTGTGTTTTTTCTTGTGAATCATCTT  550

seq1  AGAAATTAAACTCACAGAAATAGCAAGTCTACCTCAGAAGAACCA-TTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGAAATTAAACTCACAGAAATAGCAAGTCTACCTCAGAAGAACCATTTTT  600

seq1  TAGTAACTTTACACAAATAGCATGCTACATTTGCTAAATCCATTTCCCAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAACTTTACACAAATAGCATGCTACATTTGCTAAATCCATTTCCCAA  650

seq1  TCACCACTTTGTGCAGTATTTACACTGCCTTGCAGATATTTCCAGCCAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCACTTTGTGCAGTATTTACACTGCCTTGCAGATATTTCCAGCCAAG  700

seq1  TATTGTAGTCTCTGATGAAGTAAAAG-ACATATAAGACCAAGCTTTCAAT  748
      | |||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTTGTAGTCTCTGATGAAGTAAAAGAACATATAAGACCAAGCTTTCAAT  750

seq1  CATTCCATTGTTCCTTTATTCCTCTAATATCCTGTAACACAGTATCTATG  798
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CATTCCATTGTTCCTTTATTCCTCTATTATCCTGTAACACAGTATCTATG  800

seq1  TACAAATACAAAAAAATCTGTCCACTGAGGCTTTTATTCTAAGACTATTA  848
      ||| ||||| |||||||||||||||||| ||||||| ||| |||||||| 
seq2  TAC-AATAC-AAAAAATCTGTCCACTGA-GCTTTTA-TCT-AGACTATT-  844

seq1  AATTTTAGGAATATTTTGGGAATTAATAAAGCATTACAACAATCTGTATA  898
      ||||||| ||||||||  || |||||| ||||| |||||| ||||| |||
seq2  AATTTTA-GAATATTT--GGGATTAAT-AAGCA-TACAAC-ATCTG-ATA  887

seq1  TGAAATACAAACTTCAAAGATACTACCATTCGATATTTTAAAAACTGATT  948
      ||||||   |||||||||||| |||||| |||||||||   |||||||||
seq2  TGAAAT--CAACTTCAAAGAT-CTACCA-TCGATATTT---AAACTGATT  930