BAC Information

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BAC

Clone NameB6Ng01-100J17
Chromosome1 (Build37)
Map Location 78,745,061 - 78,884,856
singlet/doubletdoublet
Overlap geneLOC620521, Kcne4, LOC100039260
Upstream genePax3, LOC100039210, Sgpp2, LOC100039382, Farsb, Mogat1, Acsl3, Utp14b
Downstream geneEG545332, Scg2, Ap1s3, Wdfy1, Mrpl44, Serpine2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100J17.bB6Ng01-100J17.g
ACCDH910051DH910052
length6931,047
definitionDH910051|Mus musculus domesticus DNA, BAC clone: B6Ng01-100J17, 5' end.DH910052|Mus musculus domesticus DNA, BAC clone: B6Ng01-100J17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,884,290 - 78,884,856)(78,745,061 - 78,746,157)
sequence
gaattctttgtttagctctgtttccaatttcttaatagggttatttggtt
ttctggagtccaacttcttgatatatatatatatatgaagaacaatatga
actaaccagtaccccccagagctccctgggactaaaccaccaaagaaaac
acacagagactcatggctccagctgcatatgtagctgagggtggcctagt
cagtcctcaatgggaagagaggcccttggtcctatgaaggttctatgccc
cagcatgggggaatgccagggccaggaagcaggagtgggtgtgttggtga
gcagggggagcgaggaagagataggggattttctcagaggggaaactagt
aaaggggatagcatttgaaatgtaaataaagaaagtatctaataaaaaat
aaatgcaaataaaaatacctgtaaggaaataagtatttgtgactagctaa
attggagaagatggtcaggtaaagaaggaagacccaagtgggtgcaacat
ccaccttcctgtacttaagtgtagcactagaaacagaaacatatctttac
tcagattaaactttccaagacttaccactgatatcgtttcagtttgtttg
tttttctctcttggtaaaagttggtattgttttctcttagtactttttgt
tgcttgtttctttttggttggttgttttgtttggggagttgaa
gaattcacagggatccacctgctcctgcctccagaattttgggattaagg
tgtctgccttcatgcctggtaaaattccggtttttaatgctaagttcttg
gaggtgaaactcaggtcttcatgactgtatagcaaacacttaattgactg
tgctatctcccagctcctatataagttcttttgcaaggcatccattcaaa
ccttgtgctcattttaaaaatcaggttattttgttataattaattactct
acatttaaaaattatttattttgtgtgcactggtgttttgcctgcatgta
tgtccctgtttgggtgtcagattccctggaactggagtcactaatagttg
tgagctgccatgtgggtgctgggaattgaacctgggtattctggaagaat
ggctagtgctcttaaccactgaggcatctggaaggaaatacaatttataa
cattcatatataggttagtgaccttgtgttttgttcaagaaagtttgtct
atcctcaattttcaaaatttttctccagggatagtggtgtgtctcaatgg
tagaatagtttcttctcaggtgtgttaagctctgtagtagatacccattg
cacataatttttctcacatttacatatttactgttgttgaagtgatctag
ttgataacttctttgtttacaattcacttagaattaaaaaaaaactttca
ttttctgggagatgtagaagcctaccataatatgtgtccttttactcttc
tctctgcatggtcttgccatatatattatagtcacatatgtttaaatatg
tactatagctatatctggtggtacacacctataatttcagaacggggaat
cacagaatatgtgtcactggagtccccaactctaggcaatctttccctct
agagattacaaaacacaggaggacagtgagtttaagaccatccttggcta
ctttaacaaaactgcctcaataaccaatcccaaccctaaattccccaaac
tcacactgttatcttgtcattaatttctttaacaaaacaaaccaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_78884290_78884856
seq2: B6Ng01-100J17.b_165_733 (reverse)

seq1  TTCAACTCCCCAAAC-AAACAACCAACCAAAAAGAAACAAGCAAC-AAAA  48
      ||||||||||||||| ||||||||||||||||||||||||||||| ||||
seq2  TTCAACTCCCCAAACAAAACAACCAACCAAAAAGAAACAAGCAACAAAAA  50

seq1  GTACTAAGAGAAAACAATACCAACTTTTACCAAGAGAGAAAAACAAACAA  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTAAGAGAAAACAATACCAACTTTTACCAAGAGAGAAAAACAAACAA  100

seq1  ACTGAAACGATATCAGTGGTAAGTCTTGGAAAGTTTAATCTGAGTAAAGA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAACGATATCAGTGGTAAGTCTTGGAAAGTTTAATCTGAGTAAAGA  150

seq1  TATGTTTCTGTTTCTAGTGCTACACTTAAGTACAGGAAGGTGGATGTTGC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTCTGTTTCTAGTGCTACACTTAAGTACAGGAAGGTGGATGTTGC  200

seq1  ACCCACTTGGGTCTTCCTTCTTTACCTGACCATCTTCTCCAATTTAGCTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACTTGGGTCTTCCTTCTTTACCTGACCATCTTCTCCAATTTAGCTA  250

seq1  GTCACAAATACTTATTTCCTTACAGGTATTTTTATTTGCATTTATTTTTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAAATACTTATTTCCTTACAGGTATTTTTATTTGCATTTATTTTTT  300

seq1  ATTAGATACTTTCTTTATTTACATTTCAAATGCTATCCCCTTTACTAGTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGATACTTTCTTTATTTACATTTCAAATGCTATCCCCTTTACTAGTT  350

seq1  TCCCCTCTGAGAAAATCCCCTATCTCTTCCTCGCTCCCCCTGCTCACCAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCTGAGAAAATCCCCTATCTCTTCCTCGCTCCCCCTGCTCACCAA  400

seq1  CACACCCACTCCTGCTTCCTGGCCCTGGCATTCCCCCATGCTGGGGCATA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCACTCCTGCTTCCTGGCCCTGGCATTCCCCCATGCTGGGGCATA  450

seq1  GAACCTTCATAGGACCAAGGGCCTCTCTTCCCATTGAGGACTGACTAGGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTTCATAGGACCAAGGGCCTCTCTTCCCATTGAGGACTGACTAGGC  500

seq1  CACCCTCAGCTACATATGCAGCTGGAGCCATGAGTCTCTGTGTGTTTTCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCAGCTACATATGCAGCTGGAGCCATGAGTCTCTGTGTGTTTTCT  550

seq1  TTGGTGGTTTAGTCCCAGG  567
      |||||||||||||||||||
seq2  TTGGTGGTTTAGTCCCAGG  569

seq1: chr1_78745061_78746157
seq2: B6Ng01-100J17.g_68_1109

seq1  GAATTCACAGGGATCCACCTGCTCCTGCCTCCAGAATTTTGGGATTAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGGGATCCACCTGCTCCTGCCTCCAGAATTTTGGGATTAAGG  50

seq1  TGTCTGCCTTCATGCCTGGTAAAATTCCGGTTTTTAATGCTAAGTTCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCCTTCATGCCTGGTAAAATTCCGGTTTTTAATGCTAAGTTCTTG  100

seq1  GAGGTGAAACTCAGGTCTTCATGACTGTATAGCAAACACTTAATTGACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGAAACTCAGGTCTTCATGACTGTATAGCAAACACTTAATTGACTG  150

seq1  TGCTATCTCCCAGCTCCTATATAAGTTCTTTTGCAAGGCATCCATTCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATCTCCCAGCTCCTATATAAGTTCTTTTGCAAGGCATCCATTCAAA  200

seq1  CCTTGTGCTCATTTTAAAAATCAGGTTATTTTGTTATAATTAATTACTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGCTCATTTTAAAAATCAGGTTATTTTGTTATAATTAATTACTCT  250

seq1  ACATTTAAAAATTATTTATTTTGTGTGCACTGGTGTTTTGCCTGCATGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTAAAAATTATTTATTTTGTGTGCACTGGTGTTTTGCCTGCATGTA  300

seq1  TGTCCCTGTTTGGGTGTCAGATTCCCTGGAACTGGAGTCACTAATAGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTGTTTGGGTGTCAGATTCCCTGGAACTGGAGTCACTAATAGTTG  350

seq1  TGAGCTGCCATGTGGGTGCTGGGAATTGAACCTGGGTATTCTGGAAGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGCCATGTGGGTGCTGGGAATTGAACCTGGGTATTCTGGAAGAAT  400

seq1  GGCTAGTGCTCTTAACCACTGAGGCATCTGGAAGGAAATACAATTTATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGTGCTCTTAACCACTGAGGCATCTGGAAGGAAATACAATTTATAA  450

seq1  CATTCATATATAGGTTAGTGACCTTGTGTTTTGTTCAAGAAAGTTTGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATATATAGGTTAGTGACCTTGTGTTTTGTTCAAGAAAGTTTGTCT  500

seq1  ATCCTCAATTTTCAAAATTTTTCTCCAGGGATAGTGGTGTGTCTCAATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCAATTTTCAAAATTTTTCTCCAGGGATAGTGGTGTGTCTCAATGG  550

seq1  TAGAATAGTTTCTTCTCAGGTGTGTTAAGCTCTGTAGTAGATACCCATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATAGTTTCTTCTCAGGTGTGTTAAGCTCTGTAGTAGATACCCATTG  600

seq1  CACATAATTTTTCTCACATTTACATATTTACTGTTGTTGAAGTGATCTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAATTTTTCTCACATTTACATATTTACTGTTGTTGAAGTGATCTAG  650

seq1  TTGATAACTTCTTTGTTTACAATTCACTTAGAATTAAAAAAAAACTTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAACTTCTTTGTTTACAATTCACTTAGAATTAAAAAAAAACTTTCA  700

seq1  TTTTCTGGGAGATGTAGAAGCCTACCATAATATGTGTCCTTTTACTCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGGGAGATGTAGAAGCCTACCATAATATGTGTCCTTTTACTCTTC  750

seq1  TCTCTGCATGGTCTTGCCATATATATTATAGTCACATATGTTTAAATATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCATGGTCTTGCCATATATATTATAGTCACATATGTTTAAATATG  800

seq1  TACTATAGCTATATCTGGTGGTACACACCTATAATTTCAGAACGGGGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATAGCTATATCTGGTGGTACACACCTATAATTTCAGAACGGGGAAT  850

seq1  CACAGAATATGTGTCACTGGAGTCCCCAACTCTAGGCAATCTTTCCCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAATATGTGTCACTGGAGTCCCCAACTCTAGGCAATCTTTCCCTCT  900

seq1  AGAGATTTACAAAACACAGGAGGACAGTGAGTTTAAGACCATCCTTGGCT  950
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGA-TTACAAAACACAGGAGGACAGTGAGTTTAAGACCATCCTTGGCT  949

seq1  AC-TTAACAAAACTGCCTCAAATACCAATCCCAACCCTAAATTCCCCAAA  999
      || ||||||||||||||||||  |||||||||||||||||||||||| ||
seq2  ACTTTAACAAAACTGCCTCAATAACCAATCCCAACCCTAAATTCCCC-AA  998

seq1  ACTCACACTGTATACTTGTACATTAGTTTCTTTAAAACAAAACAAAACAA  1049
      |||||||||||   ||||| ||||| |||||||  |||||||||||    
seq2  ACTCACACTGTTATCTTGT-CATTAATTTCTTT--AACAAAACAAAC---  1042

seq1  AACAAAACAAAACAAAACAAAACAAAACAAAACAAAAACAAAACAAAC  1097
                                                      
seq2  ------------------------------------------------  1042