BAC Information

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BAC

Clone NameB6Ng01-101B04
Chromosome1 (Build37)
Map Location 178,655,883 - 178,713,952
singlet/doubletdoublet
Overlap geneCep170
Upstream geneWdr64, Exo1, Gm104, Pld5, B020018G12Rik
Downstream geneSdccag8, LOC666235, Akt3, Zfp238, EG631449, LOC100040770, 1700016C15Rik, Adss
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101B04.bB6Ng01-101B04.g
ACCDH910376DH910377
length933902
definitionDH910376|Mus musculus domesticus DNA, BAC clone: B6Ng01-101B04, 5' end.DH910377|Mus musculus domesticus DNA, BAC clone: B6Ng01-101B04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(178,713,028 - 178,713,952)(178,655,883 - 178,656,782)
sequence
gaattcaggaactagattctttgaaatcacaggattctgtccactcacta
aagtatttgttgcagaacagagattaatggagttgaatagagttgtttat
aggtctaagaagttctgttcataaatttactgattttattactcaccctc
cttctcacacacgcacatgaacacacacacacatcatgctgattacagct
ttctccccttgaaatgattgatgaatgctttgaattagtaaaggatggta
gtagaatttagtacgtaattataaaattgctttcattgtagggttaaata
atggtaggaaataggacctctagaggattgatctttaataagaagccttg
ttgtttaggcataataatgaaagcattcattatatctaagtacttgttct
catgtgtatagaatcattgtttgataatgtaacatgaccttattgcagta
catgtagggaagggggtggtgaggttacatatgaaccctaattatagcat
tcattttctttgtacttgcaaaatgaaccccatttttatcaaagttcatg
caaatctaagtaatcagtcccttaaggattgatttttggctactgactca
tgagatatttttacacttttgtgactaggtatctataattttcttctttt
ggtcctgtcatattgttgcttatgaaaattaaaaatgtttgtgttctaat
tttttaaaggccaatattgtctaaagattatatttactagattttaaagg
tttaatatttatcataatatttattatgtattttaagtattttttgttta
ttaaagggaatattccaggcttcaggctacattccaggtacttctggagc
ttccaggagatctcaaatttaaaaatagactagagacctgcttctataaa
aatattttttgttaagttgtggagattgtgggt
gaattcaaggtcatctccagctacacactgtgaatgtgggtgcagtgaaa
ccagcagactagaccacgctgtgggaagaagggaaggtttatggaggacc
gaactgccaggctgtctcttaaaggcagagagaacagcaaatggcatgaa
aaaccttgccagttttaaggggacaggtagcagtgtgtgtggggtccggg
gatatgcaggttagaacagcctgattggggcggggggctttgatttgttg
caggcttgttttcattaaccagggaccaatgacctcttgaagcagttggc
taaggaggggttgggaggaggactaggcaagtattggcttttcccgacaa
acagaaaactacttccaagacttctgagagtttaggatttttgtttaccc
cctaacaatccttcgtttatccagtcagaggcaggctgagctgagcccag
gttgtcatttaggacattgtcagtggcaccgccatttgggagcctgcttt
ggacccaacacacagtgaattgcaggtcagtctgggctacatgagacagc
agagagaagagatagatagatagatagatagatagatagatagatagata
gataggataggtaaaataatcttattttattttatcaagataccatctca
gcataatgctgtctgggcagctcagctggcataatattttaggtatagtt
tacttcaaagaccaccactcttcatatatctttttaaatatacatgtgca
tgtctgtataatctgtgtttttttttttttgtgtgtgttgtgttatttgt
ctgtgcctcctgctatatataaatgttttacttattcactgagggaaacc
atgaaggccttgaatacagaattgggtactgaaaggccaatttggccctg
at
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_178713028_178713952
seq2: B6Ng01-101B04.b_47_979 (reverse)

seq1  AACCAC-ATCTCCAC-ACTTAAACAAAAATATTTTTATAG-AGCAGGTCT  47
      | |||| |||||||| ||||||  |||||||||||||||| |||||||||
seq2  ACCCACAATCTCCACAACTTAACAAAAAATATTTTTATAGAAGCAGGTCT  50

seq1  CTAGTCTATTTTTAAATTTGAGATTCTCCTGGTAGCTCCAG-AGTACCTG  96
      ||||||||||||||||||||||| |||||||| |||||||| ||||||||
seq2  CTAGTCTATTTTTAAATTTGAGA-TCTCCTGGAAGCTCCAGAAGTACCTG  99

seq1  GAATGTAGCCTG-AGCCTGGAATATTCCCTTTAATAA--CAAAAATACTT  143
      |||||||||||| ||||||||||||||||||||||||   ||||||||||
seq2  GAATGTAGCCTGAAGCCTGGAATATTCCCTTTAATAAACAAAAAATACTT  149

seq1  AAAATACATAATAAATATTATGATAAATATT-AACCTTTAAAATCTAGTA  192
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAAATACATAATAAATATTATGATAAATATTAAACCTTTAAAATCTAGTA  199

seq1  AATATAATC-TTAGACAATATTGGCCTTTAAATAATTAGAACACAAACAT  241
      ||||||||| |||||||||||||||||||||| |||||||||||||||||
seq2  AATATAATCTTTAGACAATATTGGCCTTTAAAAAATTAGAACACAAACAT  249

seq1  TTTTAATTTTCATAAGCAACAATATGACAGGACCAAAAGAAGAAAATTAT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTTTCATAAGCAACAATATGACAGGACCAAAAGAAGAAAATTAT  299

seq1  AGATACCTAGTCACAAAAGTGTAAAAATATCTCATGAGTCAGTAGCCAAA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACCTAGTCACAAAAGTGTAAAAATATCTCATGAGTCAGTAGCCAAA  349

seq1  AATCAATCCTTAAGGGACTGATTACTTAGATTTGCATGAACTTTGATAAA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATCCTTAAGGGACTGATTACTTAGATTTGCATGAACTTTGATAAA  399

seq1  AATGGGGTTCATTTTGCAAGTACAAAGAAAATGAATGCTATAATTAGGGT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGGTTCATTTTGCAAGTACAAAGAAAATGAATGCTATAATTAGGGT  449

seq1  TCATATGTAACCTCACCACCCCCTTCCCTACATGTACTGCAATAAGGTCA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATGTAACCTCACCACCCCCTTCCCTACATGTACTGCAATAAGGTCA  499

seq1  TGTTACATTATCAAACAATGATTCTATACACATGAGAACAAGTACTTAGA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACATTATCAAACAATGATTCTATACACATGAGAACAAGTACTTAGA  549

seq1  TATAATGAATGCTTTCATTATTATGCCTAAACAACAAGGCTTCTTATTAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATGAATGCTTTCATTATTATGCCTAAACAACAAGGCTTCTTATTAA  599

seq1  AGATCAATCCTCTAGAGGTCCTATTTCCTACCATTATTTAACCCTACAAT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAATCCTCTAGAGGTCCTATTTCCTACCATTATTTAACCCTACAAT  649

seq1  GAAAGCAATTTTATAATTACGTACTAAATTCTACTACCATCCTTTACTAA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAATTTTATAATTACGTACTAAATTCTACTACCATCCTTTACTAA  699

seq1  TTCAAAGCATTCATCAATCATTTCAAGGGGAGAAAGCTGTAATCAGCATG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGCATTCATCAATCATTTCAAGGGGAGAAAGCTGTAATCAGCATG  749

seq1  ATGTGTGTGTGTGTTCATGTGCGTGTGTGAGAAGGAGGGTGAGTAATAAA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTGTGTGTTCATGTGCGTGTGTGAGAAGGAGGGTGAGTAATAAA  799

seq1  ATCAGTAAATTTATGAACAGAACTTCTTAGACCTATAAACAACTCTATTC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTAAATTTATGAACAGAACTTCTTAGACCTATAAACAACTCTATTC  849

seq1  AACTCCATTAATCTCTGTTCTGCAACAAATACTTTAGTGAGTGGACAGAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCATTAATCTCTGTTCTGCAACAAATACTTTAGTGAGTGGACAGAA  899

seq1  TCCTGTGATTTCAAAGAATCTAGTTCCTGAATTC  925
      ||||||||||||||||||||||||||||||||||
seq2  TCCTGTGATTTCAAAGAATCTAGTTCCTGAATTC  933

seq1: chr1_178655883_178656782
seq2: B6Ng01-101B04.g_69_970

seq1  GAATTCAAGGTCATCTCCAGCTACACACTGTGAATGTGGGTGCAGTGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGTCATCTCCAGCTACACACTGTGAATGTGGGTGCAGTGAAA  50

seq1  CCAGCAGACTAGACCACGCTGTGGGAAGAAGGGAAGGTTTATGGAGGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGACTAGACCACGCTGTGGGAAGAAGGGAAGGTTTATGGAGGACC  100

seq1  GAACTGCCAGGCTGTCTCTTAAAGGCAGAGAGAACAGCAAATGGCATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGCCAGGCTGTCTCTTAAAGGCAGAGAGAACAGCAAATGGCATGAA  150

seq1  AAACCTTGCCAGTTTTAAGGGGACAGGTAGCAGTGTGTGTGGGGTCCGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTGCCAGTTTTAAGGGGACAGGTAGCAGTGTGTGTGGGGTCCGGG  200

seq1  GATATGCAGGTTAGAACAGCCTGATTGGGGCGGGGGGCTTTGATTTGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGCAGGTTAGAACAGCCTGATTGGGGCGGGGGGCTTTGATTTGTTG  250

seq1  CAGGCTTGTTTTCATTAACCAGGGACCAATGACCTCTTGAAGCAGTTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTGTTTTCATTAACCAGGGACCAATGACCTCTTGAAGCAGTTGGC  300

seq1  TAAGGAGGGGTTGGGAGGAGGACTAGGCAAGTATTGGCTTTTCCCGACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAGGGGTTGGGAGGAGGACTAGGCAAGTATTGGCTTTTCCCGACAA  350

seq1  ACAGAAAACTACTTCCAAGACTTCTGAGAGTTTAGGATTTTTGTTTACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAACTACTTCCAAGACTTCTGAGAGTTTAGGATTTTTGTTTACCC  400

seq1  CCTAACAATCCTTCGTTTATCCAGTCAGAGGCAGGCTGAGCTGAGCCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACAATCCTTCGTTTATCCAGTCAGAGGCAGGCTGAGCTGAGCCCAG  450

seq1  GTTGTCATTTAGGACATTGTCAGTGGCACCGCCATTTGGGAGCCTGCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCATTTAGGACATTGTCAGTGGCACCGCCATTTGGGAGCCTGCTTT  500

seq1  GGACCCAACACACAGTGAATTGCAGGTCAGTCTGGGCTACATGAGACAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCAACACACAGTGAATTGCAGGTCAGTCTGGGCTACATGAGACAGC  550

seq1  AGAGAGAAGAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAAGAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATA  600

seq1  GATAGGATAGGTAAAATAATCTTATTTTATTTTATCAAGATACCATCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGATAGGTAAAATAATCTTATTTTATTTTATCAAGATACCATCTCA  650

seq1  GCATAATGCTGTCTGGGCAGCTCAGCTGGCATAATA-TTTAGGTATAGTT  699
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GCATAATGCTGTCTGGGCAGCTCAGCTGGCATAATATTTTAGGTATAGTT  700

seq1  TACTTCAAAGACCACCACTCTTCATATATCTTTTTAAATATACATGTGCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCAAAGACCACCACTCTTCATATATCTTTTTAAATATACATGTGCA  750

seq1  TGTCTGTATAATCTGTGTGTCTCTGTGTGTGTGTGTG-TGTG---AGTGT  795
      |||||||||||||||||| | | | | | |||||||| ||||     |||
seq2  TGTCTGTATAATCTGTGTTTTTTTTTTTTTGTGTGTGTTGTGTTATTTGT  800

seq1  CTGTGTCTTCCTGTGTATATATAAATGTTTTACATATACACTGAGGAAAA  845
      ||||| | |||||  |||||||||||||||||| ||| |||||||| |||
seq2  CTGTG-CCTCCTG-CTATATATAAATGTTTTACTTATTCACTGAGGGAAA  848

seq1  CCATGAAGGCCCTTGAAGACAGACTTGGGTACTGAAAGGCCAATCTGCCC  895
      ||||||||| ||||||| ||||| |||||||||||||||||||| || ||
seq2  CCATGAAGG-CCTTGAATACAGAATTGGGTACTGAAAGGCCAATTTGGCC  897

seq1  CTGAT  900
      |||||
seq2  CTGAT  902