BAC Information

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BAC

Clone NameB6Ng01-101E18
Chromosome9 (Build37)1 (Build37)
Map Location 33,026,641 - 33,027,08195,979,581 - 95,980,708
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGrit, Kcnj5, Kcnj1, Fli1, LOC669759, LOC100041398, Ets1, LOC100041426
Downstream geneLOC100042343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101E18.bB6Ng01-101E18.g
ACCDH910525DH910526
length8841,123
definitionDH910525|Mus musculus domesticus DNA, BAC clone: B6Ng01-101E18, 5' end.DH910526|Mus musculus domesticus DNA, BAC clone: B6Ng01-101E18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(33,026,641 - 33,027,081)(95,979,581 - 95,980,708)
sequence
gaattcagaacttttcagctggggaacgagagtaccagtgagtacagctt
tacgaggtaagtctgatcttgaactttctaaggaaattcaagacagtcta
tcagaagtaaagtggaaaatgtttggccttgaattttttctagtgttaga
agcccttttgttccttttcacatgttatcaagtggttaaggcagggcgga
ttctagatgaaattcaggacaagctatcagaagtaaagtggggagagaga
gtaggaacaaagaggaaatatggtacacaaaataagtatacaggcctttc
caagggtcttgaacccgaggaaaagttaaggttaggtaggaatacctgga
gagagattagaagaaaaagaggaaaaagggaaaagaagaaagatcaatta
gcggaggtctctaggaaaaggagcctgtgctcatcgctggatgggctcgg
ggagccagctcttagtaactctgaagcagatgaagaattctcctctgagg
aaacagactgggaggaagaagcagctcattatgagaaaaaagggtaccag
ccaggtaaagtgctagctaatcagttaaggaagccaaaagcggctggcga
aggccagtttgctgattggcctcagggcagtcggcttcaaggtccgccct
atgcggagtccccgccctgcgtagtgcgtcagcagtgcgcagagagacaa
tgcgcagagaggcagtgcgcagactcattcattcccagagaggaacaaag
gaaaatacaacaggcatttccggtctttgaaggagccgagggtgggcgtg
tccacgctccggtagaatacttacaaattaaagaaattgccgagtcggtt
ccgtaaatacggaaccaatgctaattttactttg
gaattcccctaatgtacttcaaattgggcctgtgagcttacctgggcatc
tccatcttggtaaatagtagaccccagcatgcgggacttctgaagaataa
aacattctttgcttttacatatggtttgagtccaggggtatcattcttca
gtgattcatgaaccctgatttatgtagaagatgtgtatgggaaaaggtaa
atcagtaacagatgtaagtaataagaatagacacgatccatgcatgttag
accagtatgctctatttggagaatagtatttctactgacattctgactaa
taaacccatcgcctttagtttttagtgaatatacatgattaaatatgtct
aggtgatttaaagggcaaatctaaatcaaatcctcttagagttgaaatga
aatgcaatgtgcaaacctaatctagtcaaaaccaacatgacaccaatttg
aagatgttccctttggtcaaaattagaatcaaaacaataatgatgcacac
aggttttaatgaattgaatttctcatcatctacaaaatgaagaatgacag
agggagagaaaataagaaaggggggtaggggtggcagtaaagctgccttt
ggcaacctagtaactatttgtaaacctactctaccaaggctgccagggaa
atgctttccccacaagtcttcctggtagtagtttaagttgcaaggatgat
tatttgattaaaatctttttagcattttatttactcataattttatgtgg
acactggggctttcctgcatgtatgtctgtgtaccatgttcatgaaagtg
cccacagaggccagaagacatttagacccctgaaattgaattatagacag
ttgtgagccatcatgtggatactgggaatcaaacctgaatcctctgtaag
gcaagtgattgttactctccttccaatcctccactgcaaattgcccagtc
ggatcccaagcttcgtatcagaccaacttgcagggactgtcctccctctc
agccttaattgccttgagaatgctcactgaatctcatgcagatcagcttg
tcttttctgtgggcctcccgctcggtggcttcggtctgctggccccaaaa
ttcctctcatcttcctcccattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_33026641_33027081
seq2: B6Ng01-101E18.b_43_477 (reverse)

seq1  GATGAGTATAGGCTCCTTCTCCTAGAAACCTCCGCTGATTGATCTTTTTT  50
      |||||| | ||||||||| ||||||| ||||||||| |||||||||| ||
seq2  GATGAGCACAGGCTCCTTTTCCTAGAGACCTCCGCTAATTGATCTTTCTT  50

seq1  CTTTTCC------------TTCCTTCTAATCTCTCCCCAGGTATTCTTAC  88
      |||||||            || ||||||||||||| |||||||||| |||
seq2  CTTTTCCCTTTTTCCTCTTTTTCTTCTAATCTCTCTCCAGGTATTCCTAC  100

seq1  CTGACCTAAACTTTTCCTCGGGTTCAAGACCCTTGGAAAGGCCTGTATAC  138
      || |||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCTTAACTTTTCCTCGGGTTCAAGACCCTTGGAAAGGCCTGTATAC  150

seq1  TTATTTTGTGTACCATATTTCCTCTTTGCTCCTACTCTCTCTCCCCGCTT  188
      |||||||||||||||||||||||||||| ||||||||||||||||| |||
seq2  TTATTTTGTGTACCATATTTCCTCTTTGTTCCTACTCTCTCTCCCCACTT  200

seq1  TACTTCTGATAGATTGCCCTGAATTTCATCCAGAATTTTCAGCCCTGCCT  238
      |||||||||||| ||| ||||||||||||| ||||   || |||||||||
seq2  TACTTCTGATAGCTTGTCCTGAATTTCATCTAGAA---TCCGCCCTGCCT  247

seq1  TAACCACTTGATAACATGTGAAAAGGAACAAAAAGGCTCCTAACACTAGA  288
      ||||||||||||||||||||||||||||||||| |||| |||||||||||
seq2  TAACCACTTGATAACATGTGAAAAGGAACAAAAGGGCTTCTAACACTAGA  297

seq1  GAAAGTTCAAGGCCAAACATACCTTGTAAAGCTATTTCCCACTTTACTTC  338
       ||| |||||||||||||               |||| ||||||||||||
seq2  AAAAATTCAAGGCCAAAC---------------ATTTTCCACTTTACTTC  332

seq1  TGATAGACTGTCTTGAATTTCGTTAGAAAGTTCAAGACCAGACTTACCTT  388
      ||||||||||||||||||||| ||||||||||||||| ||||||||||| 
seq2  TGATAGACTGTCTTGAATTTCCTTAGAAAGTTCAAGATCAGACTTACCTC  382

seq1  GTAAAGCTATACTTACTGGTACCCCTATTCCCCAGCTGAAGAGTTCTGAA  438
      |||||||| |||| |||||||| |   ||||||||||||| |||||||||
seq2  GTAAAGCTGTACTCACTGGTACTCTCGTTCCCCAGCTGAAAAGTTCTGAA  432

seq1  TTC  441
      |||
seq2  TTC  435

seq1: chr1_95979581_95980708
seq2: B6Ng01-101E18.g_69_1191 (reverse)

seq1  GAATGGGAGGAGGATGGAGAGGGATTCTGGGGACCAGACAGGACAGGAGC  50
      ||||||||||| ||| |||||| ||| ||||| |||| || ||| | |||
seq2  GAATGGGAGGAAGAT-GAGAGGAATTTTGGGG-CCAG-CA-GACCGAAGC  46

seq1  CACACGAAGCCGAGAGGCCCACAGAAAGGAC-AGCTGGATCTGCCATGAG  99
      ||| |||   || |||||||||||||| ||| |||| |||||| ||||||
seq2  CAC-CGA--GCGGGAGGCCCACAGAAAAGACAAGCT-GATCTG-CATGAG  91

seq1  ATTCAGTG-GCA-TCTCAAGGCAGTAAGGGCTGAGAGGGAGGACAGTCCC  147
      |||||||| ||| |||||||||| | | ||||||||||||||||||| ||
seq2  ATTCAGTGAGCATTCTCAAGGCAATTAAGGCTGAGAGGGAGGACAGT-CC  140

seq1  CTGCAAGTT-GTCTGATACGGAGCTTGGGATCCGACTGGGCAATTTGCAG  196
      ||||||||| |||||||||| |||||||||||||||||||||||||||||
seq2  CTGCAAGTTGGTCTGATACGAAGCTTGGGATCCGACTGGGCAATTTGCAG  190

seq1  TGGAGGATTGGAAGGAGAGTAACAATCACTTGCCTTACAGAGGATTCAGG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGATTGGAAGGAGAGTAACAATCACTTGCCTTACAGAGGATTCAGG  240

seq1  TTTGATTCCCAGTATCCACATGATGGCTCACAACTGTCTATAATTCCAGT  296
      ||||||||||||||||||||||||||||||||||||||||||||| || |
seq2  TTTGATTCCCAGTATCCACATGATGGCTCACAACTGTCTATAATT-CAAT  289

seq1  TTCAGGGGTCT-AATGTCTTCTGGCCTCTGTGGGCAC-TTCATGAACATG  344
      ||||||||||| ||||||||||||||||||||||||| ||||||||||||
seq2  TTCAGGGGTCTAAATGTCTTCTGGCCTCTGTGGGCACTTTCATGAACATG  339

seq1  GTACACAGACATACATGCAGGAAAGCCCCAGTGTCCACATAAAATTATGA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACAGACATACATGCAGGAAAGCCCCAGTGTCCACATAAAATTATGA  389

seq1  GTAAATAAAATGCTAAAAAGATTTTAATCAAATAATCATCCTTGCAACTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATAAAATGCTAAAAAGATTTTAATCAAATAATCATCCTTGCAACTT  439

seq1  AAACTACTACCAGGAAGACTTGTGGGGAAAGCATTTCCCTGGCAGCCTTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTACTACCAGGAAGACTTGTGGGGAAAGCATTTCCCTGGCAGCCTTG  489

seq1  GTAGAGTAGGTTTACAAATAGTTACTAGGTTGCCAAAGGCAGCTTTACTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGTAGGTTTACAAATAGTTACTAGGTTGCCAAAGGCAGCTTTACTG  539

seq1  CCACCCCTACCCCCCTTTCTTATTTTCTCTCCCTCTGTCATTCTTCATTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCTACCCCCCTTTCTTATTTTCTCTCCCTCTGTCATTCTTCATTT  589

seq1  TGTAGATGATGAGAAATTCAATTCATTAAAACCTGTGTGCATCATTATTG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATGATGAGAAATTCAATTCATTAAAACCTGTGTGCATCATTATTG  639

seq1  TTTTGATTCTAATTTTGACCAAAGGGAACATCTTCAAATTGGTGTCATGT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATTCTAATTTTGACCAAAGGGAACATCTTCAAATTGGTGTCATGT  689

seq1  TGGTTTTGACTAGATTAGGTTTGCACATTGCATTTCATTTCAACTCTAAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTGACTAGATTAGGTTTGCACATTGCATTTCATTTCAACTCTAAG  739

seq1  AGGATTTGATTTAGATTTGCCCTTTAAATCACCTAGACATATTTAATCAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTGATTTAGATTTGCCCTTTAAATCACCTAGACATATTTAATCAT  789

seq1  GTATATTCACTAAAAACTAAAGGCGATGGGTTTATTAGTCAGAATGTCAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATTCACTAAAAACTAAAGGCGATGGGTTTATTAGTCAGAATGTCAG  839

seq1  TAGAAATACTATTCTCCAAATAGAGCATACTGGTCTAACATGCATGGATC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATACTATTCTCCAAATAGAGCATACTGGTCTAACATGCATGGATC  889

seq1  GTGTCTATTCTTATTACTTACATCTGTTACTGATTTACCTTTTCCCATAC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTATTCTTATTACTTACATCTGTTACTGATTTACCTTTTCCCATAC  939

seq1  ACATCTTCTACATAAATCAGGGTTCATGAATCACTGAAGAATGATACCCC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTCTACATAAATCAGGGTTCATGAATCACTGAAGAATGATACCCC  989

seq1  TGGACTCAAACCATATGTAAAAGCAAAGAATGTTTTATTCTTCAGAAGTC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTCAAACCATATGTAAAAGCAAAGAATGTTTTATTCTTCAGAAGTC  1039

seq1  CCGCATGCTGGGGTCTACTATTTACCAAGATGGAGATGCCCAGGTAAGCT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCATGCTGGGGTCTACTATTTACCAAGATGGAGATGCCCAGGTAAGCT  1089

seq1  CACAGGCCCAATTTGAAGTACATTAGGGGAATTC  1128
      ||||||||||||||||||||||||||||||||||
seq2  CACAGGCCCAATTTGAAGTACATTAGGGGAATTC  1123