BAC Information

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BAC

Clone NameB6Ng01-101F12
Chromosome1 (Build37)
Map Location 77,811,406 - 77,962,652
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039137, Tfdp1-ps, Epha4, LOC100039330
Downstream genePax3, LOC100039210, Sgpp2, LOC100039382, Farsb, Mogat1, Acsl3, Utp14b, LOC620521, Kcne4, LOC100039260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101F12.bB6Ng01-101F12.g
ACCDH910557DH910558
length1,0101,025
definitionDH910557|Mus musculus domesticus DNA, BAC clone: B6Ng01-101F12, 5' end.DH910558|Mus musculus domesticus DNA, BAC clone: B6Ng01-101F12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,961,625 - 77,962,652)(77,811,406 - 77,812,446)
sequence
gaattcccagggggtgcctgttgggttctgggataaaggaatgagttcag
ggagggaggttaggaagagaaggtctttgtgatccactgacaaaagagtg
gatggggaggaagaccacagcaggtctttgctgtggagctggggataaga
ctggagggttggatttggaggggcagagggaaaaatgaagatctacattt
agcttacctgattctctggccagagtgattggttatttattaatgatgca
attaagtagctaggattagcttttaaaacctggtagaagtttattagttt
tagatactaaagtccagtaaaatgttgattttgattgtagctcagcaaaa
aaaaaaacatctgcttatctcagataaggccatgggttccaacctcagtc
ctagaacaatcagttttgaagtttgtgctgttctgaattaaccaatatct
tctcaacaaatactttgattttataggacatgtgctagatttgaatgaga
aagttcctttggtcccaaggtgagtgggctaagtaacggtgatagaaatt
acacttcagtttcccactagttaagcttattcagcatttacagaaatagt
aatcaaatacttattaggaaataatgagacatctaggaaggactcatttc
agaagcactaagttcttatgtatttttaaccatagggttttctgtgattt
tgcttatctgttcccaggaagtgattcatgcgcttgaagggtaggcctag
ttcttgctatgtaactgtggatactgtgagtacagtggaaggaaagcaat
cctctctcgttctattgttttcctatatgggataatatgttgtagagcct
gaagatcagcaggctcatttttttttttttttttggagcacttctctatt
gggtgatggcccaggaaagtgtctatttcacaggaatggtggggactggg
gagctgggctgctaacggggtgctcagcctcagaatgctggcataacaga
gtagtgttga
gaattccaacatctttccatgtgccaaaaggaatctatgcattagttact
ttcatgtccctgtgacaaggcgtgaaataagcaagttaaggaataagaag
tgtatttcggctcatggtcccagagggttttatctatcagggtgagagaa
aaaagtgggagattgtgatagtgctggagtgggaattcagacaccagata
cctcagcaggaggctgacaaggcgtgaaataagcaagttaaggaataaga
agtgtatttcggctcatggtcccagagggttttatctatcagggtgagag
aaaaaagtgggagattgtgatagtgctggagtgggaattcagacaccaga
tacctcagcaggaggcagaaagagctggttcaggaccaaaggtagacaac
ccttccaaaactctgccccaatggtccaccagcaggcccagctctttcag
gttctacagtatacctgaacaccacttccagcctgagaatgataacccaa
aacatgagtccgtgagggacctctccaattcaaaccaggaggtagaagaa
gatggaaaagaagggcaagatgtctctcatgccttagaaagattgcctaa
atgaagggggattggagattggaaatggaaggagcaggggacaggcaaac
agttaagaagctcctgtgaccgcacatgtaaagatggaggaaagacaggc
atagtaagtttcaactttgaaatataaaatcaataggccctaaaaattgt
caagggaggggagaagggaaggcggaaagttaaaaagcctatcacgctta
cctctgtgtccctaattcttggcacagcgcctagaatttagcatggattg
ctttgttgttctgcccaagggaagtagttttagaagattgagaaggtttt
agatataacataaattcttttctcaaagagctctaatcctggaaatttgt
ttataggatagagctttcattataatacctttgtgttagcagtaagaaaa
tggtactccatacatcaccgtggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_77961625_77962652
seq2: B6Ng01-101F12.b_47_1056 (reverse)

seq1  TCAACACTTCCTCTTGGTTATGCCAGCATTCCTGAAGGCTGAGCCCACCC  50
      ||||||| | ||||  |||||||||||||| ||| ||||||||  |||||
seq2  TCAACAC-TACTCT--GTTATGCCAGCATT-CTG-AGGCTGAG--CACCC  43

seq1  ACGTTACAGCAGCCCCAGCTCACCAGTCCCCACCAATTCCTGTGCAACTA  100
       ||||  ||||| |||||||| |||||||||||| ||||||||| || ||
seq2  -CGTT--AGCAG-CCCAGCTCCCCAGTCCCCACC-ATTCCTGTG-AAATA  87

seq1  GACACCTTCCCTGGCCATCACCCAATAGAGAAGTTGCTACAAAAAAAAAA  150
      ||||| ||||  ||||||||||||||||||||| |||| |||||||||||
seq2  GACACTTTCCTGGGCCATCACCCAATAGAGAAG-TGCTCCAAAAAAAAAA  136

seq1  AAAAAAATGAGCCTGCTGAGTCTTCAGGCTCTACAACATAATTATCCCAT  200
      ||||||||||||||||||| ||||||||||||||||||| ||||||||||
seq2  AAAAAAATGAGCCTGCTGA-TCTTCAGGCTCTACAACAT-ATTATCCCAT  184

seq1  ATAGGAAAGCAATAAGAAACGAGAGAGGATTGCTTTCCTTCCACTGTACT  250
      |||||||| |||||   |||||||||||||||||||||||||||||||||
seq2  ATAGGAAAACAATA--GAACGAGAGAGGATTGCTTTCCTTCCACTGTACT  232

seq1  CACAGTATCCACAGTTACATAGCAAGAACTAGGCCTACCCTTCAAGCGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTATCCACAGTTACATAGCAAGAACTAGGCCTACCCTTCAAGCGCA  282

seq1  TGAATCACTTCCTGGGAACAGATAAGCAAAATCACAGAAAACCCTATGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCACTTCCTGGGAACAGATAAGCAAAATCACAGAAAACCCTATGGT  332

seq1  TAAAAATACATAAGAACTTAGTGCTTCTGAAATGAGTCCTTCCTAGATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATACATAAGAACTTAGTGCTTCTGAAATGAGTCCTTCCTAGATGT  382

seq1  CTCATTATTTCCTAATAAGTATTTGATTACTATTTCTGTAAATGCTGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTATTTCCTAATAAGTATTTGATTACTATTTCTGTAAATGCTGAAT  432

seq1  AAGCTTAACTAGTGGGAAACTGAAGTGTAATTTCTATCACCGTTACTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTAACTAGTGGGAAACTGAAGTGTAATTTCTATCACCGTTACTTAG  482

seq1  CCCACTCACCTTGGGACCAAAGGAACTTTCTCATTCAAATCTAGCACATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCACCTTGGGACCAAAGGAACTTTCTCATTCAAATCTAGCACATG  532

seq1  TCCTATAAAATCAAAGTATTTGTTGAGAAGATATTGGTTAATTCAGAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATAAAATCAAAGTATTTGTTGAGAAGATATTGGTTAATTCAGAACA  582

seq1  GCACAAACTTCAAAACTGATTGTTCTAGGACTGAGGTTGGAACCCATGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAACTTCAAAACTGATTGTTCTAGGACTGAGGTTGGAACCCATGGC  632

seq1  CTTATCTGAGATAAGCAGATGTTTTTTTTTTTGCTGAGCTACAATCAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTGAGATAAGCAGATGTTTTTTTTTTTGCTGAGCTACAATCAAAA  682

seq1  TCAACATTTTACTGGACTTTAGTATCTAAAACTAATAAACTTCTACCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACATTTTACTGGACTTTAGTATCTAAAACTAATAAACTTCTACCAGG  732

seq1  TTTTAAAAGCTAATCCTAGCTACTTAATTGCATCATTAATAAATAACCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAGCTAATCCTAGCTACTTAATTGCATCATTAATAAATAACCAA  782

seq1  TCACTCTGGCCAGAGAATCAGGTAAGCTAAATGTAGATCTTCATTTTTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTGGCCAGAGAATCAGGTAAGCTAAATGTAGATCTTCATTTTTCC  832

seq1  CTCTGCCCCTCCAAATCCAACCCTCCAGTCTTATCCCCAGCTCCACAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCCCTCCAAATCCAACCCTCCAGTCTTATCCCCAGCTCCACAGCA  882

seq1  AAGACCTGCTGTGGTCTTCCTCCCCATCCACTCTTTTGTCAGTGGATCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTGCTGTGGTCTTCCTCCCCATCCACTCTTTTGTCAGTGGATCAC  932

seq1  AAAGACCTTCTCTTCCTAACCTCCCTCCCTGAACTCATTCCTTTATCCCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACCTTCTCTTCCTAACCTCCCTCCCTGAACTCATTCCTTTATCCCA  982

seq1  GAACCCAACAGGCACCCCCTGGGAATTC  1028
      ||||||||||||||||||||||||||||
seq2  GAACCCAACAGGCACCCCCTGGGAATTC  1010

seq1: chr1_77811406_77812446
seq2: B6Ng01-101F12.g_68_1092

seq1  GAATTCCAACATCATTCCATGTGCCAAAAGGAATCTATGCATTAGTTACT  50
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACATCTTTCCATGTGCCAAAAGGAATCTATGCATTAGTTACT  50

seq1  TTCATGTCCCTGTGACAAGGCGTGAAATAAGCAAGTTAAGGAATAAGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTCCCTGTGACAAGGCGTGAAATAAGCAAGTTAAGGAATAAGAAG  100

seq1  TGTATTTCGGCTCATGGTCCCAGAGGGTTTTATCTATCAGGGTGAGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTCGGCTCATGGTCCCAGAGGGTTTTATCTATCAGGGTGAGAGAA  150

seq1  AAAAGTGGGAGATTGTGATAGTGCTGGAGTGGGAATTCAGACACCAGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGGGAGATTGTGATAGTGCTGGAGTGGGAATTCAGACACCAGATA  200

seq1  CCTCAGCAGGAGGCTGACAAGGCGTGAAATAAGCAAGTTAAGGAATAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCAGGAGGCTGACAAGGCGTGAAATAAGCAAGTTAAGGAATAAGA  250

seq1  AGTGTATTTCGGCTCATGGTCCCAGAGGGTTTTATCTATCAGGGTGAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTATTTCGGCTCATGGTCCCAGAGGGTTTTATCTATCAGGGTGAGAG  300

seq1  AAAAAAGTGGGAGATTGTGATAGTGCTGGAGTGGGAATTCAGACACCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGTGGGAGATTGTGATAGTGCTGGAGTGGGAATTCAGACACCAGA  350

seq1  TACCTCAGCAGGAGGCAGAAAGAGCTGGTTCAGGACCAAAGGTAGACAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCAGCAGGAGGCAGAAAGAGCTGGTTCAGGACCAAAGGTAGACAAC  400

seq1  CCTTCCAAAACTCTGCCCCAATGGTCCACCAGCAGGCCCAGCTCTTTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAAAACTCTGCCCCAATGGTCCACCAGCAGGCCCAGCTCTTTCAG  450

seq1  GTTCTACAGTATACCTGAACACCACTTCCAGCCTGAGAATGATAACCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTACAGTATACCTGAACACCACTTCCAGCCTGAGAATGATAACCCAA  500

seq1  AACATGAGTCCGTGAGGGACCTCTCCAATTCAAACCAGGAGGTAGAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGAGTCCGTGAGGGACCTCTCCAATTCAAACCAGGAGGTAGAAGAA  550

seq1  GATGGAAAAGAAGGGCAAGATGTCTCTCATGCCTTAGAAAGATTGCCTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAAAAGAAGGGCAAGATGTCTCTCATGCCTTAGAAAGATTGCCTAA  600

seq1  ATGAAGGGGGATTGGAGATTGGAAATGGAAGGAGCAGGGGACAGGCAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGGGGATTGGAGATTGGAAATGGAAGGAGCAGGGGACAGGCAAAC  650

seq1  AGTTAAGAAGCTCCTGTGACCGCACATGTAAAGATGGAGGAAAGACAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAGAAGCTCCTGTGACCGCACATGTAAAGATGGAGGAAAGACAGGC  700

seq1  ATAGTAAGTTTCAACTTTGAAATATAAAATCAATAGGCCCTAAAAATTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAAGTTTCAACTTTGAAATATAAAATCAATAGGCCCTAAAAATTGT  750

seq1  CAAGGGAGGGGAGAAGGGAAGGCGGAAAGTTAAAAAGCCTATCACGCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGAGGGGAGAAGGGAAGGCGGAAAGTTAAAAAGCCTATCACGCTTA  800

seq1  CCTCTGTGTCCCTAATCCTTGGCACAGCGCCTAGAATTTAGCATGGATTG  850
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCTCTGTGTCCCTAATTCTTGGCACAGCGCCTAGAATTTAGCATGGATTG  850

seq1  CTTTGTTGTTTCTGCCCAAGGGAAGTAGTTTTAGAAGAATTGAGAAGGTT  900
      |||||||| |||||||||||||||||||||||||||| |||||||||| |
seq2  CTTTGTTG-TTCTGCCCAAGGGAAGTAGTTTTAGAAG-ATTGAGAAGG-T  897

seq1  TTTAGATATAACATAAATTCTTTTCTCAAAAGAGCTCTAATCCTGGAAAT  950
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTTAGATATAACATAAATTCTTTTCTC-AAAGAGCTCTAATCCTGGAAAT  946

seq1  TTGTTTAATAAGGATTAAGAGCCTTTCATTATAATACACTTTGTTGTCCA  1000
      |||||||   |||||  |||| ||||||||||||||| ||||||  |   
seq2  TTGTTTA--TAGGAT--AGAG-CTTTCATTATAATAC-CTTTGTGTT---  987

seq1  GGCAGTAAGAAAATGGGCACTCCCATACATCACCCGTGGGA  1041
       ||||||||||||| || ||| |||||||||| ||||||||
seq2  AGCAGTAAGAAAAT-GGTACT-CCATACATCA-CCGTGGGA  1025