BAC Information

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BAC

Clone NameB6Ng01-101H21
Chromosome1 (Build37)
Map Location 23,159,003 - 23,259,632
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040338, Rims1, Rims1, EG665725, LOC665731, 4933415F23Rik, Rn4.5s-ps4
Downstream geneEG623356, Ogfrl1, LOC665782, B3gat2, Smap1, 1110058L19Rik, 4921533L14Rik, LOC665808, Col9a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101H21.bB6Ng01-101H21.g
ACCDH910659DH910660
length1,168715
definitionDH910659|Mus musculus domesticus DNA, BAC clone: B6Ng01-101H21, 5' end.DH910660|Mus musculus domesticus DNA, BAC clone: B6Ng01-101H21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,258,465 - 23,259,632)(23,159,003 - 23,159,636)
sequence
gaattctgattattgaaatgtctgtgtttttgtgtcttggacaaaaccga
cttccacatgacttgtctccaattcactaaatccaaatcattcatatgga
aatgatgttgttagtaataatgaaataatatctgcagagagaatagaaaa
ataattagttccatttgtctttctatttctgacatggatgaaggacaatt
gcctttgtgaggcaaaataccagatcctttaactctccttttatgaaaat
tacatttttttcatgaaatcttgagtttaatcatgctgttttctcactgt
gtgctgtgttttaaaatatgtagataaatggatgaatagcatattttgaa
ctgtacatggcacctgggtatgatgtgctaaatgcagctcatgtggagtg
aggacaatattaaggatctttctgtaatttatcatagtctaatagaacta
cagaacacacttctcaaaaactttctcagatggttgtgtaacccttttgt
ttgaactgtaaaattccctgcaggtaggaaaaggaaagttcaaaagtctc
aggaagttcatgaaacttacaggacttacaagttcctctgcttatataag
cagtaaaacattgctattagagaggagactgttctgaggaatagatacca
gaatattcactgggcagggagttccattgacccagcttccataagtcatc
cttcatgttggagtggcctatttggtgacaaactgcctaacttatgtaag
cttgcccttggtaaaccaaactagacactgggaaatcatttctttggtct
gttcttgctactctgttttctcaatagatgttttgttcttgactccccag
ggagaaaatatcacacatatgaatgatgcctaaatagactgaccaaagaa
ccaaagatgagtccatgagaagcagttgagagaagagacagccagttggg
aatgatctgtctgaggatgacttgcatgggaagaaaatattgaatagggc
agtcatatcaagcttggtatggtaagggatgatgcattctctgtactgtc
ttagcagtcgtgtactggtggtgggcttatggcatgcaggaacctggatc
atcacgttccacaagtcagtctggggaggatatttttcagtttgtaattg
gagttctttcctgggata
gaattcattgtgtctattttaccaaaaggaagaaaataagattttaaaag
gcattgtgggaggaaaagaggagaaaggagtggggagagatggttttgaa
attgttacgcagcatgcatccagcaagttctacagaagggcagtgatcca
agagtgtagtgacaactttggatattttgtttctttgaaaaaaaaaaaca
gaaatattatgagaaagtgttttcattttaatcccaggtgtggtgatata
aggatacttagaactgtccacagcagctgactatgatttgcctcatgctc
caaagaggtgtggttttgccagcctgctgcagataatttctgcaattgtg
tgccacttggaattccaggaacattttagaaggtatataaaagctaggac
cccacaggtggggttgttggttgttggccattcaggtattggctgtggtt
tgttagttatagtcaaagaataaacaaaagaagttacattcaaagatctc
tatcactctctttcccccttatccttctttctctcctatctagttatagg
ggtgaaactggtgggataaaggggtggaaaaagaagaacccacacaacat
caaaggccagatacacaggagtcaatctcaaaagaagagaggctgaaggg
atttgataggaaagcaagctagaggtttctatgagagtgagccaaatctc
tggaagcagcaatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_23258465_23259632
seq2: B6Ng01-101H21.b_46_1213 (reverse)

seq1  TATCCCA-GAAAGGACTTCAATTACTAACTGAAAAATTATTCCTCCCCAG  49
      ||||||| ||||| ||| ||||||| |||||||||||   ||||||||||
seq2  TATCCCAGGAAAGAACTCCAATTACAAACTGAAAAAT--ATCCTCCCCAG  48

seq1  GCTGGCTTGATGAACGTGGATGATTCAGGTTCCTGCATTGCATAAAGCCC  99
       ||| ||||  |||||| |||||| |||||||||||||  ||| ||||||
seq2  ACTGACTTGTGGAACGT-GATGATCCAGGTTCCTGCATGCCAT-AAGCCC  96

seq1  ACCA-CAGTACACGACTGCTAGGACAGTACAGAG-ATGCATCATCCCTTA  147
      |||| |||||||||||||||| |||||||||||| |||||||||||||||
seq2  ACCACCAGTACACGACTGCTAAGACAGTACAGAGAATGCATCATCCCTTA  146

seq1  CCATACCAAGCTTG-TATGACTGCCCTATTC-ATATTTTCTTTCCATGCA  195
      |||||||||||||| |||||||||||||||| |||||||||| |||||||
seq2  CCATACCAAGCTTGATATGACTGCCCTATTCAATATTTTCTTCCCATGCA  196

seq1  AGTCATCCTCAGACAGATCATTCCCAACTGGCTGTCTCTTCTCTCAACTG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATCCTCAGACAGATCATTCCCAACTGGCTGTCTCTTCTCTCAACTG  246

seq1  CTTCTCATGGACTCATCTTTGGTTTCTTTGGTCAGTCTATTTAGGCATCA  295
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTTCTCATGGACTCATCTTTGG-TTCTTTGGTCAGTCTATTTAGGCATCA  295

seq1  TTCATATTGTGTGATATTTTCTCCCTGGGGAGTCAAGAAC-AAACATCTA  344
      |||||| ||||||||||||||||||||||||||||||||| |||||||||
seq2  TTCATA-TGTGTGATATTTTCTCCCTGGGGAGTCAAGAACAAAACATCTA  344

seq1  TTGAGAAAACAGAGTAGCAAGAACAGACCAAAGAAATGATTTCCCAGTGT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAAAACAGAGTAGCAAGAACAGACCAAAGAAATGATTTCCCAGTGT  394

seq1  CTAGTTTGGTTTACCAAGGGCAAGCTTACATAAGTTAGGCAGTTTGTCAC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTTGGTTTACCAAGGGCAAGCTTACATAAGTTAGGCAGTTTGTCAC  444

seq1  CAAATAGGCCACTCCAACATGAAGGATGACTTATGGAAGCTGGGTCAATG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGGCCACTCCAACATGAAGGATGACTTATGGAAGCTGGGTCAATG  494

seq1  GAACTCCCTGCCCAGTGAATATTCTGGTATCTATTCCTCAGAACAGTCTC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCCCTGCCCAGTGAATATTCTGGTATCTATTCCTCAGAACAGTCTC  544

seq1  CTCTCTAATAGCAATGTTTTACTGCTTATATAAGCAGAGGAACTTGTAAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTAATAGCAATGTTTTACTGCTTATATAAGCAGAGGAACTTGTAAG  594

seq1  TCCTGTAAGTTTCATGAACTTCCTGAGACTTTTGAACTTTCCTTTTCCTA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTAAGTTTCATGAACTTCCTGAGACTTTTGAACTTTCCTTTTCCTA  644

seq1  CCTGCAGGGAATTTTACAGTTCAAACAAAAGGGTTACACAACCATCTGAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGGGAATTTTACAGTTCAAACAAAAGGGTTACACAACCATCTGAG  694

seq1  AAAGTTTTTGAGAAGTGTGTTCTGTAGTTCTATTAGACTATGATAAATTA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTTTGAGAAGTGTGTTCTGTAGTTCTATTAGACTATGATAAATTA  744

seq1  CAGAAAGATCCTTAATATTGTCCTCACTCCACATGAGCTGCATTTAGCAC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGATCCTTAATATTGTCCTCACTCCACATGAGCTGCATTTAGCAC  794

seq1  ATCATACCCAGGTGCCATGTACAGTTCAAAATATGCTATTCATCCATTTA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATACCCAGGTGCCATGTACAGTTCAAAATATGCTATTCATCCATTTA  844

seq1  TCTACATATTTTAAAACACAGCACACAGTGAGAAAACAGCATGATTAAAC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATATTTTAAAACACAGCACACAGTGAGAAAACAGCATGATTAAAC  894

seq1  TCAAGATTTCATGAAAAAAATGTAATTTTCATAAAAGGAGAGTTAAAGGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGATTTCATGAAAAAAATGTAATTTTCATAAAAGGAGAGTTAAAGGA  944

seq1  TCTGGTATTTTGCCTCACAAAGGCAATTGTCCTTCATCCATGTCAGAAAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTATTTTGCCTCACAAAGGCAATTGTCCTTCATCCATGTCAGAAAT  994

seq1  AGAAAGACAAATGGAACTAATTATTTTTCTATTCTCTCTGCAGATATTAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGACAAATGGAACTAATTATTTTTCTATTCTCTCTGCAGATATTAT  1044

seq1  TTCATTATTACTAACAACATCATTTCCATATGAATGATTTGGATTTAGTG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTATTACTAACAACATCATTTCCATATGAATGATTTGGATTTAGTG  1094

seq1  AATTGGAGACAAGTCATGTGGAAGTCGGTTTTGTCCAAGACACAAAAACA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGAGACAAGTCATGTGGAAGTCGGTTTTGTCCAAGACACAAAAACA  1144

seq1  CAGACATTTCAATAATCAGAATTC  1168
      ||||||||||||||||||||||||
seq2  CAGACATTTCAATAATCAGAATTC  1168

seq1: chr1_23159003_23159636
seq2: B6Ng01-101H21.g_67_700

seq1  GAATTCATTGTGTCTATTTTACCAAAAGGAAGAAAATAAGATTTTAAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTGTCTATTTTACCAAAAGGAAGAAAATAAGATTTTAAAAG  50

seq1  GCATTGTGGGAGGAAAAGAGGAGAAAGGAGTGGGGAGAGATGGTTTTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGTGGGAGGAAAAGAGGAGAAAGGAGTGGGGAGAGATGGTTTTGAA  100

seq1  ATTGTTACGCAGCATGCATCCAGCAAGTTCTACAGAAGGGCAGTGATCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTACGCAGCATGCATCCAGCAAGTTCTACAGAAGGGCAGTGATCCA  150

seq1  AGAGTGTAGTGACAACTTTGGATATTTTGTTTCTTTGAAAAAAAAAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTAGTGACAACTTTGGATATTTTGTTTCTTTGAAAAAAAAAAACA  200

seq1  GAAATATTATGAGAAAGTGTTTTCATTTTAATCCCAGGTGTGGTGATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATTATGAGAAAGTGTTTTCATTTTAATCCCAGGTGTGGTGATATA  250

seq1  AGGATACTTAGAACTGTCCACAGCAGCTGACTATGATTTGCCTCATGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATACTTAGAACTGTCCACAGCAGCTGACTATGATTTGCCTCATGCTC  300

seq1  CAAAGAGGTGTGGTTTTGCCAGCCTGCTGCAGATAATTTCTGCAATTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGGTGTGGTTTTGCCAGCCTGCTGCAGATAATTTCTGCAATTGTG  350

seq1  TGCCACTTGGAATTCCAGGAACATTTTAGAAGGTATATAAAAGCTAGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACTTGGAATTCCAGGAACATTTTAGAAGGTATATAAAAGCTAGGAC  400

seq1  CCCACAGGTGGGGTTGTTGGTTGTTGGCCATTCAGGTATTGGCTGTGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGGTGGGGTTGTTGGTTGTTGGCCATTCAGGTATTGGCTGTGGTT  450

seq1  TGTTAGTTATAGTCAAAGAATAAACAAAAGAAGTTACATTCAAAGATCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGTTATAGTCAAAGAATAAACAAAAGAAGTTACATTCAAAGATCTC  500

seq1  TATCACTCTCTTTCCCCCTTATCCTTCTTTCTCTCCTATCTAGTTATAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACTCTCTTTCCCCCTTATCCTTCTTTCTCTCCTATCTAGTTATAGG  550

seq1  GGTGAAACTGGTGGGATAAAGGGGTGGAAAAAGAAGAACCCACACAACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAACTGGTGGGATAAAGGGGTGGAAAAAGAAGAACCCACACAACAT  600

seq1  CAAAGGCCAGATACACAGGAGTCAATCTCAAAAG  634
      ||||||||||||||||||||||||||||||||||
seq2  CAAAGGCCAGATACACAGGAGTCAATCTCAAAAG  634