BAC Information

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BAC

Clone NameB6Ng01-101I01
Chromosome1 (Build37)13 (Build37)
Map Location 174,664,893 - 174,665,42840,032,868 - 40,033,598
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSlamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp
Downstream geneLOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101I01.bB6Ng01-101I01.g
ACCDH910667DH910668
length802737
definitionDH910667|Mus musculus domesticus DNA, BAC clone: B6Ng01-101I01, 5' end.DH910668|Mus musculus domesticus DNA, BAC clone: B6Ng01-101I01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(174,664,893 - 174,665,428)(40,032,868 - 40,033,598)
sequence
gaattcctgatctttccaaacttttatcatgaatgggtgttggatcttgt
caaatgctttttctgcatctaacgagatgatcatgtggttttggtctttg
agtttgtttatataatggattacattgatggattttcgtatattaaacca
tccctgcatccctggaataaaacctacttggtcaggatggatgattgctt
taatgtgttcttggattcggttagcgagacttttattgaggatttttgca
tcgatattcataagagaaattggtgtgaagttctctatctttgttgggtc
tttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttgg
gtagagtaccttctacttctattttgtgaaatagtttgtgcagaactgga
attagatcttctttgaaggtctgatagaactctgcactaaacccatctgg
tcctgggctttttttggctgggagactattaataactgcttctatttctt
taggtgatatgggactgtttagatggtcaacttgatcctgattcaacttt
ggtacctggtatctgtccagaaatttgtccatttcgtccaggttttccag
ttttgttgagtatagccttttgtagaaggatctgatggtgttttggattt
ctttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tctttgttgatttttctcaaagaaccaactcctcgttttggttaattctt
tg
gaattcatgtttttgaagttcttttccacagccttaagagctgtcttgaa
tgtcccagcatttaccattttgttgagacactagccatacctttgcctcc
tggactcgtgctgtctctgattatcatggagtcattaacagggaggacat
ttcttggaggaagaacataaaattacattcagtattatacaaacaagcct
tacacctacagcagccactgacactcatggagacccatgcctgctggctc
tatcccaggggcagaaatcatgtctctatatccttaccaaggccatgcca
gacccagcattagcatggggagggatttcaaactcatttctttctaggcc
tagggcatacctggacttctcatggaagttttggcttctgaaggtccttt
tgtgaacactggacacaatgagacatcatcccaggctttctttcacttac
catttgggcacatttccattgcatcctactgacttccagtccttagggtc
agcctgaaaattctgtcctccaaacaaatgcattaatgtgtcaagttttt
caacctgcaaattccaatctgtcagattttaaaacaaacaagagcttaat
tttacttgtttgtttaattttaaagatattatggtttattaattaaaact
tgaattaattggtttctcctattcctgattaaaataaaaaagtaattgtc
aatctaaactgtcccatcatagtagagaaagaacatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_174664893_174665428
seq2: B6Ng01-101I01.b_303_842 (reverse)

seq1  CAAAGAATTAACC-AAACGAGGAGTTGGTTCTTTGAG-AAAATCAAC-AA  47
      ||||||||||||| ||||||||||||||||||||||| ||||||||| ||
seq2  CAAAGAATTAACCAAAACGAGGAGTTGGTTCTTTGAGAAAAATCAACAAA  50

seq1  GATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCC  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCC  100

seq1  TAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTG-A  146
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAA  150

seq1  AGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAA  200

seq1  AACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTA  250

seq1  CCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACC  300

seq1  TAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAG  346
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAG  350

seq1  GACCAGATGGGTTTAGTGCAGAGTTCTACCAGACCTTCAAAGAAGATCTA  396
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTA  400

seq1  ATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCT  446
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCT  450

seq1  ACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGA  500

seq1  AAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCT  536
      ||||||||||||||||||||||||||| ||||||||||||
seq2  AAGACCCAACAAAGATAGAGAACTTCACACCAATTTCTCT  540

seq1: chr13_40032868_40033598
seq2: B6Ng01-101I01.g_68_804 (reverse)

seq1  GATGTTCTTTCTCTACTATGAT-GGACAG-TTAGATTGAC-ATTAC-TTT  46
      |||||||||||||||||||||| |||||| |||||||||| ||||| |||
seq2  GATGTTCTTTCTCTACTATGATGGGACAGTTTAGATTGACAATTACTTTT  50

seq1  TTATTTTAATCAGGAATAGGAGAAACC-ATTAATTCAAG-TTTAATTATT  94
      ||||||||||||||||||||||||||| ||||||||||| |||||||| |
seq2  TTATTTTAATCAGGAATAGGAGAAACCAATTAATTCAAGTTTTAATTAAT  100

seq1  AAACCATAATATCTTTAAAATTAAACAAACAAGTAAAATTAAGCTCTTGT  144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATAATATCTTTAAAATTAAACAAACAAGTAAAATTAAGCTCTTGT  150

seq1  TTGTTTTAAAATCTGACAGATTGGAATTTGCAGGTTGAAAAACTTGACAC  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTAAAATCTGACAGATTGGAATTTGCAGGTTGAAAAACTTGACAC  200

seq1  ATTAATGCATTTGTTTGGAGGACAGAATTTTCAGGCTGACCCTAAGGACT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGCATTTGTTTGGAGGACAGAATTTTCAGGCTGACCCTAAGGACT  250

seq1  GGAAGTCAGTAGGATGCAATGGAAATGTGCCCAAATGGTAAGTGAAAGAA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCAGTAGGATGCAATGGAAATGTGCCCAAATGGTAAGTGAAAGAA  300

seq1  AGCCTGGGATGATGTCTCATTGTGTCCAGTGTTCACAAAAGGACCTTCAG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGGATGATGTCTCATTGTGTCCAGTGTTCACAAAAGGACCTTCAG  350

seq1  AAGCCAAAACTTCCATGAGAAGTCCAGGTATGCCCTAGGCCTAGAAAGAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAAAACTTCCATGAGAAGTCCAGGTATGCCCTAGGCCTAGAAAGAA  400

seq1  ATGAGTTTGAAATCCCTCCCCATGCTAATGCTGGGTCTGGCATGGCCTTG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTTGAAATCCCTCCCCATGCTAATGCTGGGTCTGGCATGGCCTTG  450

seq1  GTAAGGATATAGAGACATGATTTCTGCCCCTGGGATAGAGCCAGCAGGCA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGATATAGAGACATGATTTCTGCCCCTGGGATAGAGCCAGCAGGCA  500

seq1  TGGGTCTCCATGAGTGTCAGTGGCTGCTGTAGGTGTAAGGCTTGTTTGTA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTCCATGAGTGTCAGTGGCTGCTGTAGGTGTAAGGCTTGTTTGTA  550

seq1  TAATACTGAATGTAATTTTATGTTCTTCCTCCAAGAAATGTCCTCCCTGT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACTGAATGTAATTTTATGTTCTTCCTCCAAGAAATGTCCTCCCTGT  600

seq1  TAATGACTCCATGATAATCAGAGACAGCACGAGTCCAGGAGGCAAAGGTA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGACTCCATGATAATCAGAGACAGCACGAGTCCAGGAGGCAAAGGTA  650

seq1  TGGCTAGTGTCTCAACAAAATGGTAAATGCTGGGACATTCAAGACAGCTC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAGTGTCTCAACAAAATGGTAAATGCTGGGACATTCAAGACAGCTC  700

seq1  TTAAGGCTGTGGAAAAGAACTTCAAAAACATGAATTC  731
      |||||||||||||||||||||||||||||||||||||
seq2  TTAAGGCTGTGGAAAAGAACTTCAAAAACATGAATTC  737