BAC Information

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BAC

Clone NameB6Ng01-101I16
Chromosome1 (Build37)
Map Location 129,576,930 - 129,710,443
singlet/doubletdoublet
Overlap geneAcmsd, Ccnt2
Upstream geneE030049G20Rik, LOC383559, Mgat5, LOC667090, Tmem163
Downstream geneYsk4, Rab3gap1, Zranb3, LOC666778, LOC100042670, EG666784, R3hdm1, LOC667109, LOC100042111, Ubxd2, Lct, Mcm6, Dars, LOC620659, Cxcr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101I16.bB6Ng01-101I16.g
ACCDH910695DH910696
length1,1121,115
definitionDH910695|Mus musculus domesticus DNA, BAC clone: B6Ng01-101I16, 5' end.DH910696|Mus musculus domesticus DNA, BAC clone: B6Ng01-101I16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,709,311 - 129,710,443)(129,576,930 - 129,578,069)
sequence
gaattctttgtgaacacagaagtcttcaggaagcggggcagctgcttaca
gatcttcactgctaagcctgcttgcttttctgaattttagttttaaaaaa
tgtaacttttgggctggagaaatggctcagaactaaagagtacttctaca
taggttaaaaaaaaatcagtatttaagaaaaaaaacccaactcattactt
tttcttttgcttctctgtattttcctttcattttgtttggttttcggggt
tttgagatagggtttctctgtgtagccttggctgtactacctagaacttg
ctctatagatagaccaagctggcctcaaactcaagaggtttacctacctc
tgcctccccagtacttattaaaggctgtgccactgctgcctggcttgtag
tttttaatactttccttgatgctttcacatgaaggtttctctgaaaaccc
ctgtactggctagttttatgtcaacttgatacaatagagtcaccagagag
gaaatctcaactaagagaatgcctctgtaagcttggtctgtaggcaagtc
tgaatgcagtgctttttcttagtgaccgatgagagaagctgagcaagcca
gaaagcatggttcctacgatgtctttgcatcagcacgcgcctccaggttc
ttaccgtttgagttcctgccctgacttcttcagtgaagatggtgatatag
cagtagaagctgacagttttagtcatggtgtttatcatatcaatagaaac
cgtgacaaccccgcctgacatttccacagcaacttgccacctcccccata
gaaggtctcacttttctttcaccacctccctcctcccacaggctgctgag
atttaccactttgcctgccctgctctttttctttcaaattctttatggtc
ttagattgtcttaaagattttttcaatacttttcactatttaaggtatgg
tcatagaacttagctgctttccctatagtttcctaggcacatgttttgtt
gcactcacggagtactactaagctcatagctagggacaaatcctgcatct
gctagcggagtcagatgcatgtaacttgttacgaatctgtacttgcttgg
gccaccccacgc
gaattccatgtgtgcttacgaatatatctgttaagcttttatttcaacac
actaaacactaagaaaaaataatgccaataatatcctagagtctagtcat
cctcccgctcctacttcacaagtagatgcagacgtctgagtacagctggc
ttctggtacagtcctgagtagtcatttatctcggcaaaagcacattaatt
atgtatggtgctacttttattcctctgccaccatatacatcattatattg
attttaaaattagagacatatgtatcagccacagattcatctcatagcca
cagcagtgagtagtcctaaagaattgtatagagggagagagaagggggcc
tggaacaatggttctgttagtttgtttgtttgttttgctgttctggaact
cactctgtagaccaggctggcctcaaactcagaaatccgcctgcctctgc
ctcccaagtgctgggattaaaggcatgcgccaccactgccaggtggaaca
atggttcttaacctgtgggtcgcgaccccttcagagacttgaagaactct
ttcacaggggtcacctaagaccatcagaaaacacagatatttacattaca
attcataacaggatcaaaattacagttatgaagtaacaatggaaataatt
ttatggttgagggcagatcaccacaacacggaacttattaaacagtcgca
gctttaggaaggttgagggccactgtgctagaggtacagctcttgccaag
ttcaattctcagcccccaggataggcagctcacagccacctgaaccccag
cttcaggggacccagtgccctcttctggcctctcagcacacttgggactc
atatgtacatacccatatttgagcacacacagatacacatcataaaaata
taaagtaaattgtttaagggagtttgtaagggagaaatatcttccagcag
aagcttctagaggtgtggcctgaatgaaccacgagaagacattaagaaaa
gaagaagataagctggattacgagcctcggataagttctgccttagtcaa
ctaatctaaaaaataataataaaaaggcttcttttatttagattagacgg
aatcatgtaggcaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_129709311_129710443
seq2: B6Ng01-101I16.b_44_1155 (reverse)

seq1  GCGTGGGGGTGGCCCCAAGCAAAGTAACCAGATTCTGTAACAAGTTTACA  50
      |||| ||||||| ||||||| |||||  ||||||| |||||||| |||||
seq2  GCGT-GGGGTGG-CCCAAGC-AAGTA--CAGATTC-GTAACAAG-TTACA  43

seq1  TGCTATCCTGACTCCCGCTAGCAGATGGCAGGGTTTTTGTCCCCCTAGCT  100
      ||| || |||||| |||||||||||| ||||| ||| |    ||||||||
seq2  TGC-AT-CTGACT-CCGCTAGCAGAT-GCAGGATTTGT----CCCTAGCT  85

seq1  ATGAGCTTTTAGTTAGTTCTTCCCGTGAGTGCAACAAAACATGTGGCTAG  150
      ||||||  |||| |||| ||  ||||||||||||||||||||||| ||||
seq2  ATGAGC--TTAG-TAGTACT--CCGTGAGTGCAACAAAACATGTGCCTAG  130

seq1  GAAACTATAGGGAAAGCAGCCTGAGTTCTATGACCATACCTTAAATAGTG  200
      ||||||||||||||||||| || |||||||||||||||||||||||||||
seq2  GAAACTATAGGGAAAGCAG-CTAAGTTCTATGACCATACCTTAAATAGTG  179

seq1  AAAAGTATTTGAAAAAATTCTTTAAGACAATCTAAGACCATAAAGAATTT  250
      ||||||| ||||||||| ||||||||||||||||||||||||||||||||
seq2  AAAAGTA-TTGAAAAAA-TCTTTAAGACAATCTAAGACCATAAAGAATTT  227

seq1  GAAAGAAAAAGAGCAGGGCAGGC-AAGTGGTAAATCTCAGCAGCCTGTGG  299
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GAAAGAAAAAGAGCAGGGCAGGCAAAGTGGTAAATCTCAGCAGCCTGTGG  277

seq1  GAGGAGGGAGGTGGTGAAAG-AAAGTGAGACCTTCTATGGGGGAGGTGGC  348
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAGGAGGGAGGTGGTGAAAGAAAAGTGAGACCTTCTATGGGGGAGGTGGC  327

seq1  AAGTTGCTGTGGAAATGTCAGGCGGGGTTGTCACGGTTTCTATTGCTATG  398
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAGTTGCTGTGGAAATGTCAGGCGGGGTTGTCACGGTTTCTATTGATATG  377

seq1  ATAAACACCATGACTAAAACTGTCAGCTTCTACTGCTATATCACCATCTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACACCATGACTAAAACTGTCAGCTTCTACTGCTATATCACCATCTT  427

seq1  CACTGAAGAAGTCAGGGCAGGAACTCAAACGGTAAGAACCTGGAGGCGCG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAAGAAGTCAGGGCAGGAACTCAAACGGTAAGAACCTGGAGGCGCG  477

seq1  TGCTGATGCAAAGACATCGTAGGAACCATGCTTTCTGGCTTGCTCAGCTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGATGCAAAGACATCGTAGGAACCATGCTTTCTGGCTTGCTCAGCTT  527

seq1  CTCTCATCGGTCACTAAGAAAAAGCACTGCATTCAGACTTGCCTACAGAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATCGGTCACTAAGAAAAAGCACTGCATTCAGACTTGCCTACAGAC  577

seq1  CAAGCTTACAGAGGCATTCTCTTAGTTGAGATTTCCTCTCTGGTGACTCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTACAGAGGCATTCTCTTAGTTGAGATTTCCTCTCTGGTGACTCT  627

seq1  ATTGTATCAAGTTGACATAAAACTAGCCAGTACAGGGGTTTTCAGAGAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATCAAGTTGACATAAAACTAGCCAGTACAGGGGTTTTCAGAGAAA  677

seq1  CCTTCATGTGAAAGCATCAAGGAAAGTATTAAAAACTACAAGCCAGGCAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATGTGAAAGCATCAAGGAAAGTATTAAAAACTACAAGCCAGGCAG  727

seq1  CAGTGGCACAGCCTTTAATAAGTACTGGGGAGGCAGAGGTAGGTAAACCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCACAGCCTTTAATAAGTACTGGGGAGGCAGAGGTAGGTAAACCT  777

seq1  CTTGAGTTTGAGGCCAGCTTGGTCTATCTATAGAGCAAGTTCTAGGTAGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTTTGAGGCCAGCTTGGTCTATCTATAGAGCAAGTTCTAGGTAGT  827

seq1  ACAGCCAAGGCTACACAGAGAAACCCTATCTCAAAACCCCGAAAACCAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAAGGCTACACAGAGAAACCCTATCTCAAAACCCCGAAAACCAAA  877

seq1  CAAAATGAAAGGAAAATACAGAGAAGCAAAAGAAAAAGTAATGAGTTGGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGAAAGGAAAATACAGAGAAGCAAAAGAAAAAGTAATGAGTTGGG  927

seq1  TTTTTTTTCTTAAATACTGATTTTTTTTTAACCTATGTAGAAGTACTCTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCTTAAATACTGATTTTTTTTTAACCTATGTAGAAGTACTCTT  977

seq1  TAGTTCTGAGCCATTTCTCCAGCCCAAAAGTTACATTTTTTAAAACTAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTGAGCCATTTCTCCAGCCCAAAAGTTACATTTTTTAAAACTAAA  1027

seq1  ATTCAGAAAAGCAAGCAGGCTTAGCAGTGAAGATCTGTAAGCAGCTGCCC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGAAAAGCAAGCAGGCTTAGCAGTGAAGATCTGTAAGCAGCTGCCC  1077

seq1  CGCTTCCTGAAGACTTCTGTGTTCACAAAGAATTC  1133
      |||||||||||||||||||||||||||||||||||
seq2  CGCTTCCTGAAGACTTCTGTGTTCACAAAGAATTC  1112

seq1: chr1_129576930_129578069
seq2: B6Ng01-101I16.g_67_1181

seq1  GAATTCCATGTGTGCTTACGAATATATCTGTTAAGCTTTTATTTCAACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTGTGCTTACGAATATATCTGTTAAGCTTTTATTTCAACAC  50

seq1  ACTAAACACTAAGAAAAAATAATGCCAATAATATCCTAGAGTCTAGTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAACACTAAGAAAAAATAATGCCAATAATATCCTAGAGTCTAGTCAT  100

seq1  CCTCCCGCTCCTACTTCACAAGTAGATGCAGACGTCTGAGTACAGCTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCGCTCCTACTTCACAAGTAGATGCAGACGTCTGAGTACAGCTGGC  150

seq1  TTCTGGTACAGTCCTGAGTAGTCATTTATCTCGGCAAAAGCACATTAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTACAGTCCTGAGTAGTCATTTATCTCGGCAAAAGCACATTAATT  200

seq1  ATGTATGGTGCTACTTTTATTCCTCTGCCACCATATACATCATTATATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGGTGCTACTTTTATTCCTCTGCCACCATATACATCATTATATTG  250

seq1  ATTTTAAAATTAGAGACATATGTATCAGCCACAGATTCATCTCATAGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAATTAGAGACATATGTATCAGCCACAGATTCATCTCATAGCCA  300

seq1  CAGCAGTGAGTAGTCCTAAAGAATTGTATAGAGGGAGAGAGAAGGGGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTGAGTAGTCCTAAAGAATTGTATAGAGGGAGAGAGAAGGGGGCC  350

seq1  TGGAACAATGGTTCTGTTAGTTTGTTTGTTTGTTTTGCTGTTCTGGAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACAATGGTTCTGTTAGTTTGTTTGTTTGTTTTGCTGTTCTGGAACT  400

seq1  CACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCGCCTGCCTCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCGCCTGCCTCTGC  450

seq1  CTCCCAAGTGCTGGGATTAAAGGCATGCGCCACCACTGCCAGGTGGAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAAGTGCTGGGATTAAAGGCATGCGCCACCACTGCCAGGTGGAACA  500

seq1  ATGGTTCTTAACCTGTGGGTCGCGACCCCTTCAGAGACTTGAAGAACTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTCTTAACCTGTGGGTCGCGACCCCTTCAGAGACTTGAAGAACTCT  550

seq1  TTCACAGGGGTCACCTAAGACCATCAGAAAACACAGATATTTACATTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGGGGTCACCTAAGACCATCAGAAAACACAGATATTTACATTACA  600

seq1  ATTCATAACAGGATCAAAATTACAGTTATGAAGTAACAATGGAAATAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATAACAGGATCAAAATTACAGTTATGAAGTAACAATGGAAATAATT  650

seq1  TTATGGTTGAGGGCAGATCACCACAACACGGAACTTATTAAACAGTCGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGTTGAGGGCAGATCACCACAACACGGAACTTATTAAACAGTCGCA  700

seq1  GCTTTAGGAAGGTTGAGGGCCACTGTGCTAGAGGTACAGCTCTTGCCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAGGAAGGTTGAGGGCCACTGTGCTAGAGGTACAGCTCTTGCCAAG  750

seq1  TTCAATTCTCAGCCCCCAGGATAGGCAGCTCACAGCCACCTGAACCCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTCTCAGCCCCCAGGATAGGCAGCTCACAGCCACCTGAACCCCAG  800

seq1  CTTCAGGGGACCCAGTGCCCTCTTCTGGCCTCTCAGCACACTT-GGACTC  849
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTTCAGGGGACCCAGTGCCCTCTTCTGGCCTCTCAGCACACTTGGGACTC  850

seq1  ATATGTACATACCCATATATGAGCACACACAGATACACATCATTAAAAAT  899
      |||||||||||||||||| ||||||||||||||||||||||| |||||||
seq2  ATATGTACATACCCATATTTGAGCACACACAGATACACATCA-TAAAAAT  899

seq1  AATAAAGTAAATTGTTTTAAAGGGAGTTTGTTAGGGAGAAAAATCATTCC  949
       ||||||||||||||||  |||||||||||| ||||||||| ||| ||||
seq2  -ATAAAGTAAATTGTTT--AAGGGAGTTTGTAAGGGAGAAATATC-TTCC  945

seq1  AGCAAGAAGCTTCTAAGAAGGTGTGGCCTGAATGAACCACAGAAGAAGAC  999
      ||| |||||||||||   ||||||||||||||||||||||   |||||||
seq2  AGC-AGAAGCTTCTA--GAGGTGTGGCCTGAATGAACCAC--GAGAAGAC  990

seq1  ATTAAGAAAAAGAAAGAAAGATAAAGCTGGAATACAGAGACATTCGTGAT  1049
      |||||| |||||||   ||||| |||||||| ||| ||| |  ||| |||
seq2  ATTAAG-AAAAGAA--GAAGAT-AAGCTGGATTAC-GAGCC--TCG-GAT  1032

seq1  AGAGTTTCTGCTTTATGCAAACTAAATCCTAAAAAATAATAATAATAAAG  1099
      | || |||||| ||| |  ||||||   ||||||||||||||||| ||||
seq2  A-AG-TTCTGCCTTA-GTCAACTAA--TCTAAAAAATAATAATAA-AAAG  1076

seq1  TCTTCTTTATTTTAGTTTAGACAGGATATCATGTAGCCAAG  1140
       |||||||  ||||| |||||| ||| ||||||||| ||||
seq2  GCTTCTTTTATTTAGATTAGAC-GGA-ATCATGTAGGCAAG  1115