BAC Information

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BAC

Clone NameB6Ng01-101J01
Chromosome1 (Build37)
Map Location 28,488,303 - 28,628,209
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040952, EG433281
Downstream geneEG665903, Gm597, LOC435614, EG623924, EG433283
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101J01.bB6Ng01-101J01.g
ACCDH910711DH910712
length1,060687
definitionDH910711|Mus musculus domesticus DNA, BAC clone: B6Ng01-101J01, 5' end.DH910712|Mus musculus domesticus DNA, BAC clone: B6Ng01-101J01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,627,156 - 28,628,209)(28,488,303 - 28,488,989)
sequence
gaattctccattctttttgttttattttttaatttttaaaatattttaat
taggtacttttctcatttacatttccaatgctatcccaaaagttccccat
accctccccccccacactccccacccacccattcccactttttggccctg
gcattcccttgtactgggacatataaagtttgcaagtccaatgggcctct
ctttccagtgatagccgactaggccatcttttgatacatatgcagctaga
gacaggagcactagggtactggttagttcttctccattctttctacagga
aaagatttttgcattccaatgtagccccaaaaagaacactaatacataaa
tgtttcaaacacatcaatcagttctaggtgaagcaggaggaaaagataga
attgatatcacttacagctgtctacagtctgctttaccaatctttctcca
atagtttccttttctgaggatgtttccatggtgagacacgggccactcac
tgaataggagagggactaagtgctttgaaaagaattggagcatcagaact
ctcatattcatgttgtgtgagctaggcatgtgcacaactttcacagtgct
caatgaagacagaagattagttgtggtgtaaaggtaccttcatacatggt
gaaagtaacaaaatgataatatttttaaagaaaggtttggaaaacaattt
tgcaaaaacattccagatttccaattgagggtagagtggaattccactca
ctaatataaagcacatttatcatctttcacaacatttgggtttctctgtt
tcagattgttttatctctttactgaatccagttatctgcaatagcatttt
catttttagaaaaatacctgccattgttgtaatttctacatagttgtaat
tattttaataccaccctaaattttttatggaaaatgatgaaatttttata
tgtaccctaaaatagttcttactggtatggctattgtaacatatcttatt
gtttagagcccatgaaagcctagatatattaaatatttactcatttacat
aaggttaaag
gaattcacttgaagacccagaaataaatccacataattatggacacttga
ttttcgaggaaaaacaaaacaaaacaaaacaaacaaacaaacaaaaaaaa
cccaaaaaaaacaaaaaacaaacaaacaaaaaaaaaccaaaaaacttaaa
ccaaagaaagcctcacagaagtggaagctaagttcttatttctgaagacc
atgtgagttaaagatacttcccagaggttcctggccaagaatagatttgc
ctgtcagcgtactacccgaagattttctttttttctttcttttttttttt
ttttatgttgatagtgtgtgcagaagacgtccgccatcctttttcccatc
ttgatatttactgcctgaagactactatcctatagagattacccaaaccc
acagctgtataccataaaccccacctccttgtttaactgtaatagccccc
tttcccttgtcagctgtatacagtagcctcgcctcgctagtcaattcttt
tttttttctttttgaatattttatttcatagtaccagattgtttaatgga
agcctccaaaggagggataccactaaaagtcccacagatgacacctatga
actacaacaatggtgatcctggcacaactcaatagttcagtagtggcatg
catatatggtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_28627156_28628209
seq2: B6Ng01-101J01.b_44_1103 (reverse)

seq1  CTTTAACCTTATGTAAATGA--TAATATTT-ATATATTTTAGCTTTCATG  47
      ||||||||||||||||||||   ||||||| |||||| |  |||||||||
seq2  CTTTAACCTTATGTAAATGAGTAAATATTTAATATATCTAGGCTTTCATG  50

seq1  AGCACTAAACAATACAGATATGTTACAATAG-CATACCAGTAAGAAACTA  96
       || |||||||||| |||||||||||||||| |||||||||||| |||||
seq2  GGCTCTAAACAATA-AGATATGTTACAATAGCCATACCAGTAAG-AACTA  98

seq1  TTTTA-GGTACATATAAAAA-TTCATCATTATCCATAAAAAATTTA-GGT  143
      ||||| |||||||||||||| ||||||||| ||||||||||||||| |||
seq2  TTTTAGGGTACATATAAAAATTTCATCATTTTCCATAAAAAATTTAGGGT  148

seq1  GGTATTAAAATAATTACAACTATGTAGAAATAACAACAATGGCAGGTATT  193
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGTATTAAAATAATTACAACTATGTAGAAATTACAACAATGGCAGGTATT  198

seq1  TTTCTAAAAAAATGAAAATGCTATTGCAGGTAACTGGATTCAGTAAAGAG  243
      |||||  |||||||||||||||||||||| ||||||||||||||||||||
seq2  TTTCT--AAAAATGAAAATGCTATTGCAGATAACTGGATTCAGTAAAGAG  246

seq1  ATAAAACAATCTGAAACAGAGAAACCC-AATGTTGTGAAAGATGATAAAT  292
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATAAAACAATCTGAAACAGAGAAACCCAAATGTTGTGAAAGATGATAAAT  296

seq1  GTGC-TTATATTAGTGAGTGGAATTCCACTCTACCCTCAATTGGAAATCT  341
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTATATTAGTGAGTGGAATTCCACTCTACCCTCAATTGGAAATCT  346

seq1  GGAATGTTTTTGCAAAATTGTTTTCCAAACCTTTCTTT-AAAATATTATC  390
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GGAATGTTTTTGCAAAATTGTTTTCCAAACCTTTCTTTAAAAATATTATC  396

seq1  ATTTTGTTACTTTCACCATGTATGAAGGTACCTTTACACCACAACTAATC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTACTTTCACCATGTATGAAGGTACCTTTACACCACAACTAATC  446

seq1  TTCTGTCTTCATTGAGCACTGTGAAAGTTGTGCACATGCCTAGCTCACAC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCTTCATTGAGCACTGTGAAAGTTGTGCACATGCCTAGCTCACAC  496

seq1  AACATGAATATGAGAGTTCTGATGCTCCAATTCTTTTCAAAGCACTTAGT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGAATATGAGAGTTCTGATGCTCCAATTCTTTTCAAAGCACTTAGT  546

seq1  CCCTCTCCTATTCAGTGAGTGGCCCGTGTCTCACCATGGAAACATCCTCA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCCTATTCAGTGAGTGGCCCGTGTCTCACCATGGAAACATCCTCA  596

seq1  GAAAAGGAAACTATTGGAGAAAGATTGGTAAAGCAGACTGTAGACAGCTG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGAAACTATTGGAGAAAGATTGGTAAAGCAGACTGTAGACAGCTG  646

seq1  TAAGTGATATCAATTCTATCTTTTCCTCCTGCTTCACCTAGAACTGATTG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGATATCAATTCTATCTTTTCCTCCTGCTTCACCTAGAACTGATTG  696

seq1  ATGTGTTTGAAACATTTATGTATTAGTGTTCTTTTTGGGGCTACATTGGA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTTGAAACATTTATGTATTAGTGTTCTTTTTGGGGCTACATTGGA  746

seq1  ATGCAAAAATCTTTTCCTGTAGAAAGAATGGAGAAGAACTAACCAGTACC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAAAATCTTTTCCTGTAGAAAGAATGGAGAAGAACTAACCAGTACC  796

seq1  CTAGTGCTCCTGTCTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGCTCCTGTCTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGG  846

seq1  CTATCACTGGAAAGAGAGGCCCATTGGACTTGCAAACTTTATATGTCCCA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCACTGGAAAGAGAGGCCCATTGGACTTGCAAACTTTATATGTCCCA  896

seq1  GTACAAGGGAATGCCAGGGCCAAAAAGTGGGAATGGGTGGGTGGGGAGTG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAGGGAATGCCAGGGCCAAAAAGTGGGAATGGGTGGGTGGGGAGTG  946

seq1  TGGGGGGGGAGGGTATGGGGAACTTTTGGGATAGCATTGGAAATGTAAAT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGGGGAGGGTATGGGGAACTTTTGGGATAGCATTGGAAATGTAAAT  996

seq1  GAGAAAAGTACCTAATTAAAATATTTTAAAAATTAAAAAATAAAACAAAA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAGTACCTAATTAAAATATTTTAAAAATTAAAAAATAAAACAAAA  1046

seq1  AGAATGGAGAATTC  1054
      ||||||||||||||
seq2  AGAATGGAGAATTC  1060

seq1: chr1_28488303_28488989
seq2: B6Ng01-101J01.g_71_757

seq1  GAATTCACTTGAAGACCCAGAAATAAATCCACATAATTATGGACACTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTGAAGACCCAGAAATAAATCCACATAATTATGGACACTTGA  50

seq1  TTTTCGAGGAAAAACAAAACAAAACAAAACAAACAAACAAACAAAAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCGAGGAAAAACAAAACAAAACAAAACAAACAAACAAACAAAAAAAA  100

seq1  CCCAAAAAAAACAAAAAACAAACAAACAAAAAAAAACCAAAAAACTTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAAAAAACAAAAAACAAACAAACAAAAAAAAACCAAAAAACTTAAA  150

seq1  CCAAAGAAAGCCTCACAGAAGTGGAAGCTAAGTTCTTATTTCTGAAGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGAAAGCCTCACAGAAGTGGAAGCTAAGTTCTTATTTCTGAAGACC  200

seq1  ATGTGAGTTAAAGATACTTCCCAGAGGTTCCTGGCCAAGAATAGATTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGTTAAAGATACTTCCCAGAGGTTCCTGGCCAAGAATAGATTTGC  250

seq1  CTGTCAGCGTACTACCCGAAGATTTTCTTTTTTTCTTTCTTTTTTTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGCGTACTACCCGAAGATTTTCTTTTTTTCTTTCTTTTTTTTTTT  300

seq1  TTTTATGTTGATAGTGTGTGCAGAAGACGTCCGCCATCCTTTTTCCCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTTGATAGTGTGTGCAGAAGACGTCCGCCATCCTTTTTCCCATC  350

seq1  TTGATATTTACTGCCTGAAGACTACTATCCTACAGAGATTACCCAAACCC  400
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTGATATTTACTGCCTGAAGACTACTATCCTATAGAGATTACCCAAACCC  400

seq1  ACAGCTGTATACCATAAACCCCACCTCCTTGTTTAACTGTAATAGCCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGTATACCATAAACCCCACCTCCTTGTTTAACTGTAATAGCCCCC  450

seq1  TTTCCCTTGTCAGCTGTATACAGTAGCCTCGCCTCGCTAGTCAATTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTTGTCAGCTGTATACAGTAGCCTCGCCTCGCTAGTCAATTCTTT  500

seq1  TTTTTTTCTTTTTGAATATTTTATTTCATAGTACCAGATTGTTTAATGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTTTTTGAATATTTTATTTCATAGTACCAGATTGTTTAATGGA  550

seq1  AGCCTCCAAAGGAGGGATACCACTAAAAGTCCCACAGATGACACCTATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCCAAAGGAGGGATACCACTAAAAGTCCCACAGATGACACCTATGA  600

seq1  ACTACAACAATGGTGATCCTGGCACAACTCAATAGTTCAGTAGTGGCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAACAATGGTGATCCTGGCACAACTCAATAGTTCAGTAGTGGCATG  650

seq1  CATATATGGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  687
      |||||||||||||||||||||||||||||||||||||
seq2  CATATATGGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  687