BAC Information

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BAC

Clone NameB6Ng01-101K03
Chromosome1 (Build37)
Map Location 90,672,071 - 90,777,061
singlet/doubletdoublet
Overlap genenone
Upstream geneAtg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik
Downstream geneLOC208347, Sh3bp4, LOC383542, EG665688, Centg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101K03.bB6Ng01-101K03.g
ACCDH910757DH910758
length1,0981,100
definitionDH910757|Mus musculus domesticus DNA, BAC clone: B6Ng01-101K03, 5' end.DH910758|Mus musculus domesticus DNA, BAC clone: B6Ng01-101K03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,775,959 - 90,777,061)(90,672,071 - 90,673,191)
sequence
gaattccaggtagtagctgtgagccatcacatcccttggctgacagatgc
atcgtccaatctctgcctccatcctttctctttgtctacatatgacactt
tggtctgtgtccagatttccattgctacatttaaaaacttcattcataca
agtataatttgaacatcaagtatattctaccctaattttcccttttttgt
aaggacgtcagccatactgcacaaagatacaacccaccagttacatctgc
agcaaccctacttctgagtgaggtcatacattctgaggtactagaagtta
tgattttctctgtgaatttggtacaagacaatttacctgtgacaaccacc
taacctttgcttagatactagatattaatctcctctctttgctcagcttc
ttggtttgtgtatttctctctctctctgtctctctctctctctctttcct
gcagacaaattactaagcatatgaaaggtggtttttgcccagaactctgt
actcaaagaaagcaggatgcactgataactttataataatgacgtactac
taataatgatgtgctataaaataatacagcatataaaaacatcctttaga
ataatggtgatatactaattaagacttgatcaagaagggccaatctaaga
tggaagacagaaacataggagagggtctctaggcaggtggtgaactagct
gctatctgctcaagggcaggaccagctctgtctcctctagagatagcaaa
gttctgaggctgcaagctgtgagaactgaagcagttgctgaggcctcaac
aaacattggcattttatttttaccagagtggcagtcccaggagggccgta
agcagggcatgccatcgcttgtatctgcaagcctcttcttaagtatcttt
ggatgccctattacgtaaccaagtcagaaaccagcaggaagagctggagg
acctcttttaggtcacaagttttagggacaggctcagccaaaaaacggca
ctagcctggctggagatgcaaagttacagtacttcctgcattatggagaa
ggcagtctgtgtctccacgtcatgtccaatctgagcaatctgagtgaa
gaattcttttttgtctcagctggagtggctcttttttctcctactgtcca
aaggcttccatccaagctatctctttctagaaaaaaaaaagtgtagatag
atgtgtcttagcagcagcatggttctggacatatgtatgggtccgagact
catcatcgctgctccttggctggatgcagggggatagcaaggagtttcaa
tctgggagaggcagcaggcagatcagtcctgagtttatgtttgtgagtgt
tacgctaaccacggtggctctttctttaccatgcctggagctgtagatta
catctagtatgatccctgtcagagtattctatgtctccttagcagtgttc
agccttaactgtgtccttcaggcccaaccacttgcaagagaatgctgaag
caaagtcacttgtggcttgtggtttgagtgaggatgttcaagatacactt
tgcacttgccacatgcagaaggttccaggctgagaggacgttccattacc
tcttggccgatcataaccctgtgatattgggagggcctaacaccagccct
atctgacaggccatgaatcctggctggagaaaaactctcctgagtctcgt
ggccagcaggggtggagctggcaccaaggcagagaaagcacaagtacctg
gtttctgctcccatagagactgcatgtggatgaatagttggatcacggaa
gaaaacaggtacgaaggaacaaaaagtgccaaaaatggagcctttgtaga
aggatgcacaagagtagccatgacaggaatcctagctgctcttttcttgg
tcccttgcaacctaacatctccatcagcatggagtaagagccagatgcta
tgtggcctttatttttgaccttattacggttctagacccaatgtcccaat
aggtcatgacttgaaggagaggcagaggcagatctacagtttctctcatc
agtgggcaggactccacagtacgtgtcttactgacaccattcccggagtc
tgttcttcaagttcgaagtagaaatgcacgagcagacgtagaccctctgt
gagcagttcaggtcttgtgattctcttcagtatcaggcagtcatcccagc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_90775959_90777061
seq2: B6Ng01-101K03.b_45_1142 (reverse)

seq1  TTCACTCAGAATGCTTCAGATGGGACATGAACGTGGAGACACAGACTGGC  50
      |||||||||| ||| |||||| ||||||| |||||||||||||||||| |
seq2  TTCACTCAGATTGC-TCAGATTGGACATG-ACGTGGAGACACAGACTGCC  48

seq1  TTCT-CATAATGCAGGAAGTACTGTAACTTTGCATCTTCCAGCCAGGCTA  99
      |||| ||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTCTCCATAATGCAGGAAGTACTGTAACTTTGCATC-TCCAGCCAGGCTA  97

seq1  GTGCCGTTTTTTTGGCTGGAGCCTGTCCCTAAAACTTGTGACCTAAAAGA  149
      |||||| |||||||||| ||||||||||||||||||||||||||||||||
seq2  GTGCCG-TTTTTTGGCT-GAGCCTGTCCCTAAAACTTGTGACCTAAAAGA  145

seq1  GGTCCTCCAGCTCCTTCCTGCTGGTTTCTGACTTGGTTACGTAATAGGGC  199
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGTCCTCCAGCT-CTTCCTGCTGGTTTCTGACTTGGTTACGTAATAGGGC  194

seq1  ATCCAAAGATACTTAAGAAGAGGCTTGCAGATACAAGCGATGGCATGCCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAAGATACTTAAGAAGAGGCTTGCAGATACAAGCGATGGCATGCCC  244

seq1  TGCTTACGGCCCTCCTGGGACTGCCACTCTGGTAAAAATAAAATGCCAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTACGGCCCTCCTGGGACTGCCACTCTGGTAAAAATAAAATGCCAAT  294

seq1  GTTTGTTGAGGCCTCAGCAACTGCTTCAGTTCTCACAGCTTGCAGCCTCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTGAGGCCTCAGCAACTGCTTCAGTTCTCACAGCTTGCAGCCTCA  344

seq1  GAACTTTGCTATCTCTAGAGGAGACAGAGCTGGTCCTGCCCTTGAGCAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTGCTATCTCTAGAGGAGACAGAGCTGGTCCTGCCCTTGAGCAGA  394

seq1  TAGCAGCTAGTTCACCACCTGCCTAGAGACCCTCTCCTATGTTTCTGTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGCTAGTTCACCACCTGCCTAGAGACCCTCTCCTATGTTTCTGTCT  444

seq1  TCCATCTTAGATTGGCCCTTCTTGATCAAGTCTTAATTAGTATATCACCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTTAGATTGGCCCTTCTTGATCAAGTCTTAATTAGTATATCACCA  494

seq1  TTATTCTAAAGGATGTTTTTATATGCTGTATTATTTTATAGCACATCATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTAAAGGATGTTTTTATATGCTGTATTATTTTATAGCACATCATT  544

seq1  ATTAGTAGTACGTCATTATTATAAAGTTATCAGTGCATCCTGCTTTCTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTAGTACGTCATTATTATAAAGTTATCAGTGCATCCTGCTTTCTTT  594

seq1  GAGTACAGAGTTCTGGGCAAAAACCACCTTTCATATGCTTAGTAATTTGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACAGAGTTCTGGGCAAAAACCACCTTTCATATGCTTAGTAATTTGT  644

seq1  CTGCAGGAAAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAAATACACAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGAAAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAAATACACAAA  694

seq1  CCAAGAAGCTGAGCAAAGAGAGGAGATTAATATCTAGTATCTAAGCAAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAAGCTGAGCAAAGAGAGGAGATTAATATCTAGTATCTAAGCAAAG  744

seq1  GTTAGGTGGTTGTCACAGGTAAATTGTCTTGTACCAAATTCACAGAGAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGTGGTTGTCACAGGTAAATTGTCTTGTACCAAATTCACAGAGAAA  794

seq1  ATCATAACTTCTAGTACCTCAGAATGTATGACCTCACTCAGAAGTAGGGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAACTTCTAGTACCTCAGAATGTATGACCTCACTCAGAAGTAGGGT  844

seq1  TGCTGCAGATGTAACTGGTGGGTTGTATCTTTGTGCAGTATGGCTGACGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCAGATGTAACTGGTGGGTTGTATCTTTGTGCAGTATGGCTGACGT  894

seq1  CCTTACAAAAAAGGGAAAATTAGGGTAGAATATACTTGATGTTCAAATTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACAAAAAAGGGAAAATTAGGGTAGAATATACTTGATGTTCAAATTA  944

seq1  TACTTGTATGAATGAAGTTTTTAAATGTAGCAATGGAAATCTGGACACAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGTATGAATGAAGTTTTTAAATGTAGCAATGGAAATCTGGACACAG  994

seq1  ACCAAAGTGTCATATGTAGACAAAGAGAAAGGATGGAGGCAGAGATTGGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGTGTCATATGTAGACAAAGAGAAAGGATGGAGGCAGAGATTGGA  1044

seq1  CGATGCATCTGTCAGCCAAGGGATGTGATGGCTCACAGCTACTACCTGGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGCATCTGTCAGCCAAGGGATGTGATGGCTCACAGCTACTACCTGGA  1094

seq1  ATTC  1103
      ||||
seq2  ATTC  1098

seq1: chr1_90672071_90673191
seq2: B6Ng01-101K03.g_69_1168

seq1  GAATTCTTTTTTGTCTCAGCTGGAGTGGCTCTTTTTTCTCCTACTGTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTTGTCTCAGCTGGAGTGGCTCTTTTTTCTCCTACTGTCCA  50

seq1  AAGGCTTCCATCCAAGCTATCTCTTTCTAGAAAAAAAAAAGTGTAGATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTCCATCCAAGCTATCTCTTTCTAGAAAAAAAAAAGTGTAGATAG  100

seq1  ATGTGTCTTAGCAGCAGCATGGTTCTGGACATATGTATGGGTCCGAGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCTTAGCAGCAGCATGGTTCTGGACATATGTATGGGTCCGAGACT  150

seq1  CATCATCGCTGCTCCTTGGCTGGATGCAGGGGGATAGCAAGGAGTTTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCGCTGCTCCTTGGCTGGATGCAGGGGGATAGCAAGGAGTTTCAA  200

seq1  TCTGGGAGAGGCAGCAGGCAGATCAGTCCTGAGTTTATGTTTGTGAGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAGAGGCAGCAGGCAGATCAGTCCTGAGTTTATGTTTGTGAGTGT  250

seq1  TACGCTAACCACGGTGGCTCTTTCTTTACCATGCCTGGAGCTGTAGATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGCTAACCACGGTGGCTCTTTCTTTACCATGCCTGGAGCTGTAGATTA  300

seq1  CATCTAGTATGATCCCTGTCAGAGTATTCTATGTCTCCTTAGCAGTGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAGTATGATCCCTGTCAGAGTATTCTATGTCTCCTTAGCAGTGTTC  350

seq1  AGCCTTAACTGTGTCCTTCAGGCCCAACCACTTGCAAGAGAATGCTGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTAACTGTGTCCTTCAGGCCCAACCACTTGCAAGAGAATGCTGAAG  400

seq1  CAAAGTCACTTGTGGCTTGTGGTTTGAGTGAGGATGTTCAAGATACACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTCACTTGTGGCTTGTGGTTTGAGTGAGGATGTTCAAGATACACTT  450

seq1  TGCACTTGCCACATGCAGAAGGTTCCAGGCTGAGAGGACGTTCCATTACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTTGCCACATGCAGAAGGTTCCAGGCTGAGAGGACGTTCCATTACC  500

seq1  TCTTGGCCGATCATAACCCTGTGATATTGGGAGGGCCTAACACCAGCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGCCGATCATAACCCTGTGATATTGGGAGGGCCTAACACCAGCCCT  550

seq1  ATCTGACAGGCCATGAATCCTGGCTGGAGAAAAACTCTCCTGAGTCTCGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGACAGGCCATGAATCCTGGCTGGAGAAAAACTCTCCTGAGTCTCGT  600

seq1  GGCCAGCAGGGGTGGAGCTGGCACCAAGGCAGAGAAAGCACAAGTACCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCAGGGGTGGAGCTGGCACCAAGGCAGAGAAAGCACAAGTACCTG  650

seq1  GTTTCTGCTCCCATAGAGACTGCATGTGGATGAATAGTTGGATCACGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGCTCCCATAGAGACTGCATGTGGATGAATAGTTGGATCACGGAA  700

seq1  GAAAACAGGTACGAAGGAACAAAAAGTGCCAAAAATGGAGCCTTTGTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAGGTACGAAGGAACAAAAAGTGCCAAAAATGGAGCCTTTGTAGA  750

seq1  AGGATGCACAAGAGTAGCCATGACAGGAATCCTAGCTGCTCTTTTCTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGCACAAGAGTAGCCATGACAGGAATCCTAGCTGCTCTTTTCTTGG  800

seq1  TCCCTTGCAACCTAACATCTCCATCAGCATGGAGTAAGAGCCAGATGCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGCAACCTAACATCTCCATCAGCATGGAGTAAGAGCCAGATGCTA  850

seq1  TGTGGCCTTTATTTTTGACCTTATTACAGGTTCTAGACCCAATGTCCCAA  900
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGTGGCCTTTATTTTTGACCTTATTAC-GGTTCTAGACCCAATGTCCCAA  899

seq1  TAGGTCATGACTTCGAGGAAGAGGCAGAAGCAGATCTACAGTTTCTCTCA  950
      ||||||||||||| || | ||||||||| |||||||||||||||||||||
seq2  TAGGTCATGACTT-GAAGGAGAGGCAGAGGCAGATCTACAGTTTCTCTCA  948

seq1  TCCAGTGGGCAGGACTCCACAAGTACGTGTTCCTTACTGACAACCATTCC  1000
      | |||||||||||||||||| |||||||||  ||||||||| |||||| |
seq2  T-CAGTGGGCAGGACTCCAC-AGTACGTGT--CTTACTGAC-ACCATT-C  992

seq1  CCGGAGTCCTGTTCTTCCAGGTTCGAAGTAGAAATGGCAACGAGCAGACG  1050
      ||||||| |||||||| || ||||||||||||||||   |||||||||||
seq2  CCGGAGT-CTGTTCTT-CAAGTTCGAAGTAGAAATG--CACGAGCAGACG  1038

seq1  TAGACCCTTCTGTGAGCAAGTTCAGGGTTCTTGTGTATCCCCCTTTTCAG  1100
      ||||||| ||||||||| ||||||||  |||||||  |    || |||||
seq2  TAGACCC-TCTGTGAGC-AGTTCAGG--TCTTGTGATT----CTCTTCAG  1080

seq1  TATCAGGCCAGTCATCCCAGC  1121
      ||||||| |||||||||||||
seq2  TATCAGG-CAGTCATCCCAGC  1100