BAC Information

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BAC

Clone NameB6Ng01-101P20
Chromosome1 (Build37)
Map Location 64,425,122 - 64,482,402
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042638, Adam23, Gm215, Mdh1b, Fastkd2, 4933402D24Rik, LOC671842, OTTMUSG00000013918, Klf7, Ppia-ps1_583.1
Downstream geneLOC100043124, Creb1, 2310038H17Rik, Ccnyl1, Fzd5, 9430067K14Rik, LOC667245, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101P20.bB6Ng01-101P20.g
ACCDH911009DH911010
length1,0461,097
definitionDH911009|Mus musculus domesticus DNA, BAC clone: B6Ng01-101P20, 5' end.DH911010|Mus musculus domesticus DNA, BAC clone: B6Ng01-101P20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,481,357 - 64,482,402)(64,425,122 - 64,426,225)
sequence
gaattcatcttcctcaaggtgagatggacacttgagcccttctacccata
aaagcaagccacaaaacctagaaacgttatgttctctcttctcgtttttt
ttcccttaaatgccttcattccaaaggaatgctccaaacagagtctggga
agagtgtgaaccggtctctcaggctgttaggattgtttcatgccttttgc
ccaaccctgcttttaaaggcctgtctattcaccaagcagaagcctaacag
taggttttccagatctcagggtctacattctttatcctatgaatggaatc
atacagcagacgtcatttttaaaatttatttcattttgccagcaggatct
cttcatgtagccctggctgtcttggaactttctctcaagaccagactggc
ctcgaactcagagatccacctggctccatttcctgagtgctggaattaaa
ggcttgagtcaccaggcctggctgacacacattcctttcttattttccat
ccttggttcattgtgatgtctgcaagcttcatgcacacgagtcattctta
tctctagatattttgtattttgttagggagagagtatttattgttatgta
ttttctcaatgatcatgtatgctcttgcccagccccgtttttgccttgaa
tacttgtttcaggtacaggcttctgtgtgtgtttcacatagtaacttatt
gtagttatctactccacaggtgggtgctgactagactgcagttcatacct
aagggagcttccacctcctctcctggttatgctgcgggtggatctttttt
ggtaattaattaccaaaatttacatgccccacctcccagttcccatcaca
aagtttttccccacttcccttttgcctttggagggtgccccccagatatc
tcctcctctcctccggtgcatcaagtctaacaggatttaggcacatcctt
ttcccctgaagcaagaacaaggcatctctctgctacatatgtgcacgagc
agggatcagctgagtatggtacgctctttaatgatgttcagtctcg
gaattcttgggttggtttctgttttctttccagaaaagcactctgattat
tgaatgtctctctcttatcctccctcctcctccccatcctctcttcctct
cctacccctttgtgggtaagaatattttttgcttctttctgtgtacctaa
caagtccacagagatggggcagtgacctgatttttttttcattaactgat
gtacttaaaaaatatttctgcttaactgagttgtgtagactggagagctg
agcaggtgaccaaatgatgatgcatgctggttgtgagacattatggaatc
ttatagactgctgttatatgaaaaatgtgtgtcccattgtagaacataac
agaaactcagctcctactcactgtctccgtagagcactggcacgtggtta
gccattccaagttttaaacatactatggacttttaaaatatgaattcctc
acctttcatatgctggcaaattatcaaagaataaaattttaagacaaaat
aaaatttttaattaatacagacccagtgtggtatatagttcgagcaggtc
agccagggaccgaccgtgctcagcctcttcctaaaacatcatagtgagta
atccaacatctcttttatccatcctttgcactagtcccaccatgctgatc
tgttgtgttctactgtggcagaggatgtgataccagcgtaatttggacca
aagagacatctgtttggttcacctggaagcagaagtttgacatcaaagca
gtgtttatctagtgacagcccttcttgctctattaaaatggggcaggagg
aaccacaaggccaaagggcaagagaagagaaagcacaagaaggtgcagcc
ctccatggcctgagcatctcttaaaactctcacctatcaatactgccaaa
atagcaattaattttccaatgtgagacttggaaggagacatacattcaaa
tcatgtaacccaccttctaacagcctggtgacaaagtcctcaattcgggt
tctctgctcttgtccagctagagtagcattcataacagaattgtgtctag
cccatattacatatgataatactgtgtaaactaaaggatcatcagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_64481357_64482402
seq2: B6Ng01-101P20.b_50_1095 (reverse)

seq1  CGAGACTGAACCACCACTAAAGAGCGTACACTACTCAGGCTGATCCCTGG  50
      |||||||||| || || ||||||||||||  |||||| |||||||||| |
seq2  CGAGACTGAA-CATCATTAAAGAGCGTACCATACTCA-GCTGATCCCT-G  47

seq1  CTCCGTGGCACATATGTAGCAGAGAGATGCCTTG-TCCTGCCTCAGGGGG  99
      || ||| ||||||||||||||||||||||||||| || ||| ||||||| 
seq2  CT-CGT-GCACATATGTAGCAGAGAGATGCCTTGTTCTTGCTTCAGGGGA  95

seq1  AAAGGATGTGCCT-AATCCTG-TAGACTTGATGCACCGGAGGAGGGGAGG  147
      ||||||||||||| ||||||| |||||||||||||||||||||| |||||
seq2  AAAGGATGTGCCTAAATCCTGTTAGACTTGATGCACCGGAGGAGAGGAGG  145

seq1  AGATATCTGGGGGGCACCCTCCAAAGGC-AAAGGGAAGTGGGGAAAAACT  196
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGATATCTGGGGGGCACCCTCCAAAGGCAAAAGGGAAGTGGGGAAAAACT  195

seq1  TTGTGATGGGAACTGGGAGGTGGGGCATGTAAATTTTGGTAATTAATTAC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATGGGAACTGGGAGGTGGGGCATGTAAATTTTGGTAATTAATTAC  245

seq1  CAAAAAAGATCCACCCGCAGCATAACCAGGAGAGGAGGTGGAAGCTCCCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAGATCCACCCGCAGCATAACCAGGAGAGGAGGTGGAAGCTCCCT  295

seq1  TAGGTATGAACTGCAGTCTAGTCAGCACCCACCTGTGGAGTAGATAACTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTATGAACTGCAGTCTAGTCAGCACCCACCTGTGGAGTAGATAACTA  345

seq1  CAATAAGTTACTATGTGAAACACACACAGAAGCCTGTACCTG-AACAAGT  395
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CAATAAGTTACTATGTGAAACACACACAGAAGCCTGTACCTGAAACAAGT  395

seq1  ATTCAAGGCAAAAACGGGGCTGGGCAAGAGCATACATGATCATTGAGAAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGGCAAAAACGGGGCTGGGCAAGAGCATACATGATCATTGAGAAA  445

seq1  ATACATAACAATAAATACTCTCTCCCTAACAAAATACAAAATATCTAGAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATAACAATAAATACTCTCTCCCTAACAAAATACAAAATATCTAGAG  495

seq1  ATAAGAATGACTCGTGTGCATGAAGCTTGCAGACATCACAATGAACCAAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAATGACTCGTGTGCATGAAGCTTGCAGACATCACAATGAACCAAG  545

seq1  GATGGAAAATAAGAAAGGAATGTGTGTCAGCCAGGCCTGGTGACTCAAGC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAAAATAAGAAAGGAATGTGTGTCAGCCAGGCCTGGTGACTCAAGC  595

seq1  CTTTAATTCCAGCACTCAGGAAATGGAGCCAGGTGGATCTCTGAGTTCGA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATTCCAGCACTCAGGAAATGGAGCCAGGTGGATCTCTGAGTTCGA  645

seq1  GGCCAGTCTGGTCTTGAGAGAAAGTTCCAAGACAGCCAGGGCTACATGAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGTCTGGTCTTGAGAGAAAGTTCCAAGACAGCCAGGGCTACATGAA  695

seq1  GAGATCCTGCTGGCAAAATGAAATAAATTTTAAAAATGACGTCTGCTGTA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCCTGCTGGCAAAATGAAATAAATTTTAAAAATGACGTCTGCTGTA  745

seq1  TGATTCCATTCATAGGATAAAGAATGTAGACCCTGAGATCTGGAAAACCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCCATTCATAGGATAAAGAATGTAGACCCTGAGATCTGGAAAACCT  795

seq1  ACTGTTAGGCTTCTGCTTGGTGAATAGACAGGCCTTTAAAAGCAGGGTTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTAGGCTTCTGCTTGGTGAATAGACAGGCCTTTAAAAGCAGGGTTG  845

seq1  GGCAAAAGGCATGAAACAATCCTAACAGCCTGAGAGACCGGTTCACACTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAAGGCATGAAACAATCCTAACAGCCTGAGAGACCGGTTCACACTC  895

seq1  TTCCCAGACTCTGTTTGGAGCATTCCTTTGGAATGAAGGCATTTAAGGGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGACTCTGTTTGGAGCATTCCTTTGGAATGAAGGCATTTAAGGGA  945

seq1  AAAAAAACGAGAAGAGAGAACATAACGTTTCTAGGTTTTGTGGCTTGCTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACGAGAAGAGAGAACATAACGTTTCTAGGTTTTGTGGCTTGCTT  995

seq1  TTATGGGTAGAAGGGCTCAAGTGTCCATCTCACCTTGAGGAAGATGAATT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGGTAGAAGGGCTCAAGTGTCCATCTCACCTTGAGGAAGATGAATT  1045

seq1  C  1046
      |
seq2  C  1046

seq1: chr1_64425122_64426225
seq2: B6Ng01-101P20.g_69_1165

seq1  GAATTCTTGGGTTGGTTTCTGTTTTCTTTCCAGAAAAGCACTCTGATTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGGTTGGTTTCTGTTTTCTTTCCAGAAAAGCACTCTGATTAT  50

seq1  TGAATGTCTCTCTCTTATCCTCCCTCCTCCTCCCCATCCTCTCTTCCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTCTCTCTCTTATCCTCCCTCCTCCTCCCCATCCTCTCTTCCTCT  100

seq1  CCTACCCCTTTGTGGGTAAGAATATTTTTTGCTTCTTTCTGTGTACCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCCCTTTGTGGGTAAGAATATTTTTTGCTTCTTTCTGTGTACCTAA  150

seq1  CAAGTCCACAGAGATGGGGCAGTGACCTGATTTTTTTTTCATTAACTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCCACAGAGATGGGGCAGTGACCTGATTTTTTTTTCATTAACTGAT  200

seq1  GTACTTAAAAAATATTTCTGCTTAACTGAGTTGTGTAGACTGGAGAGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTAAAAAATATTTCTGCTTAACTGAGTTGTGTAGACTGGAGAGCTG  250

seq1  AGCAGGTGACCAAATGATGATGCATGCTGGTTGTGAGACATTATGGAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGTGACCAAATGATGATGCATGCTGGTTGTGAGACATTATGGAATC  300

seq1  TTATAGACTGCTGTTATATGAAAAATGTGTGTCCCATTGTAGAACATAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGACTGCTGTTATATGAAAAATGTGTGTCCCATTGTAGAACATAAC  350

seq1  AGAAACTCAGCTCCTACTCACTGTCTCCGTAGAGCACTGGCACGTGGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTCAGCTCCTACTCACTGTCTCCGTAGAGCACTGGCACGTGGTTA  400

seq1  GCCATTCCAAGTTTTAAACATACTATGGACTTTTAAAATATGAATTCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTCCAAGTTTTAAACATACTATGGACTTTTAAAATATGAATTCCTC  450

seq1  ACCTTTCATATGCTGGCAAATTATCAAAGAATAAAATTTTAAGACAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCATATGCTGGCAAATTATCAAAGAATAAAATTTTAAGACAAAAT  500

seq1  AAAATTTTTAATTAATACAGACCCAGTGTGGTATATAGTTCGAGCAGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTTTAATTAATACAGACCCAGTGTGGTATATAGTTCGAGCAGGTC  550

seq1  AGCCAGGGACCGACCGTGCTCAGCCTCTTCCTAAAACATCATAGTGAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGGACCGACCGTGCTCAGCCTCTTCCTAAAACATCATAGTGAGTA  600

seq1  ATCCAACATCTCTTTTATCCATCCTTTGCACTAGTCCCACCATGCTGATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAACATCTCTTTTATCCATCCTTTGCACTAGTCCCACCATGCTGATC  650

seq1  TGTTGTGTTCTACTGTGGCAGAGGATGTGATACCAGCGTAATTTGGACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGTTCTACTGTGGCAGAGGATGTGATACCAGCGTAATTTGGACCA  700

seq1  AAGAGACATCTG-TTGGTTCACCTGGAAGCAGAAGTTTGACATCAAAGCA  749
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAGAGACATCTGTTTGGTTCACCTGGAAGCAGAAGTTTGACATCAAAGCA  750

seq1  GTG-TTATCTAGTGACAG-CCTTCTTGCTCTATTAAAATGGGGCAGGAGG  797
      ||| |||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTGTTTATCTAGTGACAGCCCTTCTTGCTCTATTAAAATGGGGCAGGAGG  800

seq1  AACCACAAGGCCAAAGGGCAAGAGAAGAGAAAGCACAAGAAGGGTGCAG-  846
      ||||||||||||||||||||||||||||||||||||||||| ||||||| 
seq2  AACCACAAGGCCAAAGGGCAAGAGAAGAGAAAGCACAAGAA-GGTGCAGC  849

seq1  CCTCCATGGCCTGAGCATCTCTTAAAACTCTCACCTATCAATACTGCCAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATGGCCTGAGCATCTCTTAAAACTCTCACCTATCAATACTGCCAA  899

seq1  AATAGCAATTAATTTTCCAATGTGAGACTTGG-AGGAGACATACATTCAA  945
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AATAGCAATTAATTTTCCAATGTGAGACTTGGAAGGAGACATACATTCAA  949

seq1  ATCATGTAACCCACCTTCTAACAGCCTGGTGACCAAAGTCCACAATCCGG  995
      |||||||||||||||||||||||||||||||| |||||||| |||| |||
seq2  ATCATGTAACCCACCTTCTAACAGCCTGGTGA-CAAAGTCCTCAATTCGG  998

seq1  G-TCTCTGCTTCTTGTCACAGCTAGAGTAGCATTCATAACCAGATTTGTG  1044
      | ||||||| ||||||| ||||||||||||||||||||| |||| |||||
seq2  GTTCTCTGC-TCTTGTC-CAGCTAGAGTAGCATTCATAA-CAGAATTGTG  1045

seq1  TCTAAGCCCATTAATAACATAATTGATAATACTGTGTAAAACTAAAGTGA  1094
      ||| |||||||  || |||||  |||||||||||||| ||||||||| ||
seq2  TCT-AGCCCAT--ATTACATA--TGATAATACTGTGT-AAACTAAAG-GA  1088

seq1  TCATCTAGAA  1104
      ||||| ||||
seq2  TCATC-AGAA  1097