BAC Information

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BAC

Clone NameB6Ng01-102F15
Chromosome1 (Build37)12 (Build37)
Map Location 31,577,608 - 31,578,34632,631,616 - 32,631,836
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG624138, LOC100040699, Phf3, EG638995, Ptp4a1, EG435615, LOC669402, EG435616, 4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik, EG226957, EG624262
Downstream geneLOC624275, LOC666056, LOC100041238, Khdrbs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102F15.bB6Ng01-102F15.g
ACCDH911270DH911271
length1,045489
definitionDH911270|Mus musculus domesticus DNA, BAC clone: B6Ng01-102F15, 5' end.DH911271|Mus musculus domesticus DNA, BAC clone: B6Ng01-102F15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(31,577,608 - 31,578,346)(32,631,616 - 32,631,836)
sequence
gaattctaggtcatgttttattttaatctgcctttaaaacaattccatca
ttctttagtggagggcgtctttacattttattcagatcatgaagtgtgtg
catgtatgtgtgtgtgctgcatgtattgtacttattgatcaatatagtct
ctcacatgttaataaaaagaacacagagtacaatatattttatgatataa
tgatttgtaaatatagaataaggattttaaaagaattataagttcttata
attttttttaattaggtattttcctcatttacattttcaatgctatacca
aaagtcacccatacccacccccccaatcccctacccacccactccccctt
tttggccctggggttcccctgtactggggcatataaagtttgcacaacca
atgggcctctctttgcagtgatggctgactaggccatcttttgatacata
tgcagctagagacaagagctccggggtactggttagttcatattgttcca
cctatagggttgcagatccctttagctccttggttgctttctctagctcc
tccattgggggccgtgtgatccatccaatagctgactgtgatatccactt
ctgtgtttgctaggccccggcatagtctcacaagagacaactatatctgg
atcctttcagcaaaatcttgctaatgtatgcaatggtgtcagcatttgga
agctgattatggtatggatccgtgcatatggcaatcactagatggtccat
tctttcgtcgcagctccaaattttgtctctgtaactccttccatgggtgt
tttgttcccatttctaagaaggggcaaagtgtgcacactttggtcttcgt
tcttcttgaatttcatgtgtttagcaaattgtatcttatatcttgggtat
cctaagtttctgggctaatatccacttatcagtgagtacatattgtgcga
gttcctttgtgattggttacctcactcagatgatgccctccagtccatcc
atttgcctaggaatttcataaatcattctttttaaatagctgagt
tttgtttagttctgtaccccatttttaatggggttatctgattttctgga
gtccaccttcttcagttctttatacatattagatattagtcccctatctg
atttaggataggtaaagatcctttcccagtctgttggtggcctttttgtc
ttattgacggtgtggtgtcctttgccttacagaagttttgcaaatttatg
aggtcccatttgccaattctcgatcttacagcacaagccattgctgttca
gaagtggatgctcacagtcagctattggatggatcacagggcccccaatg
gaggagctagagaaagtacccaaggagctaaagggatctgcaaccctata
ggtggaacaacaatatgaactaaccagtacctcctggagctcgtgtctct
agccagccatcagtggaaagagaggcccattggttatgcaaactttatat
gcctcagtacaggggaacgccagggccaagaagtgggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_31577608_31578346
seq2: B6Ng01-102F15.b_44_782

seq1  GAATTCTAGGTCATGTTTTATTTTAATCTGCCTTTAAAACAATTCCATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGTCATGTTTTATTTTAATCTGCCTTTAAAACAATTCCATCA  50

seq1  TTCTTTAGTGGAGGGCGTCTTTACATTTTATTCAGATCATGAAGTGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAGTGGAGGGCGTCTTTACATTTTATTCAGATCATGAAGTGTGTG  100

seq1  CATGTATGTGTGTGTGCTGCATGTATTGTACTTATTGATCAATATAGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATGTGTGTGTGCTGCATGTATTGTACTTATTGATCAATATAGTCT  150

seq1  CTCACATGTTAATAAAAAGAACACAGAGTACAATATATTTTATGATATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATGTTAATAAAAAGAACACAGAGTACAATATATTTTATGATATAA  200

seq1  TGATTTGTAAATATAGAATAAGGATTTTAAAAGAATTATAAGTTCTTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGTAAATATAGAATAAGGATTTTAAAAGAATTATAAGTTCTTATA  250

seq1  ATTTTTTTTAATTAGGTATTTTCCTCATTTACATTTTCAATGCTATACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTAATTAGGTATTTTCCTCATTTACATTTTCAATGCTATACCA  300

seq1  AAAGTCACCCATACCCACCCCCCCAATCCCCTACCCACCCACTCCCCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCACCCATACCCACCCCCCCAATCCCCTACCCACCCACTCCCCCTT  350

seq1  TTTGGCCCTGGGGTTCCCCTGTACTGGGGCATATAAAGTTTGCACAACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCCCTGGGGTTCCCCTGTACTGGGGCATATAAAGTTTGCACAACCA  400

seq1  ATGGGCCTCTCTTTGCAGTGATGGCTGACTAGGCCATCTTTTGATACATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCCTCTCTTTGCAGTGATGGCTGACTAGGCCATCTTTTGATACATA  450

seq1  TGCAGCTAGAGACAAGAGCTCCGGGGTACTGGTTAGTTCATATTGTTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTAGAGACAAGAGCTCCGGGGTACTGGTTAGTTCATATTGTTCCA  500

seq1  CCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGTTGCTTTCTCTAGCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGTTGCTTTCTCTAGCTCC  550

seq1  TCCATTGGGGGCCGTGTGATCCATCCAATAGCTGACTGTGATATCCACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGGGGGCCGTGTGATCCATCCAATAGCTGACTGTGATATCCACTT  600

seq1  CTGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAGACAACTATATCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAGACAACTATATCTGG  650

seq1  ATCCTTTCAGCAAAATCTTGCTAATGTATGCAATGGTGTCAGCATTTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTCAGCAAAATCTTGCTAATGTATGCAATGGTGTCAGCATTTGGA  700

seq1  AGCTGATTATGGTATGGATCCGTGCATATGGCAATCACT  739
      |||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATTATGGTATGGATCCGTGCATATGGCAATCACT  739

seq1: chr12_32631616_32631836
seq2: B6Ng01-102F15.g_322_562 (reverse)

seq1  CTCCCACTTCTTGGCCCTGGC-----------------------AAG---  24
      |||||||||||||||||||||                       |||   
seq2  CTCCCACTTCTTGGCCCTGGCGTTCCCCTGTACTGAGGCATATAAAGTTT  50

seq1  -----ACCCATGGGCCTCTCTTTCCACTGACTTCTGATACATACGCAGCT  69
           ||| |||||||||||||||||||||   |||           |||
seq2  GCATAACCAATGGGCCTCTCTTTCCACTGATGGCTG-----------GCT  89

seq1  AGAGACACGAGCTCC-GGGGGTACTGGTCAGTTCATAATGTTGTTCCACC  118
      ||||||||||||||| || ||||||||| |||||||| ||||||||||||
seq2  AGAGACACGAGCTCCAGGAGGTACTGGTTAGTTCATATTGTTGTTCCACC  139

seq1  TATAGGGTTGCAGACCCCTTTAGCTCCTTGGGTACTTTCTCTAACTCCTC  168
      |||||||||||||| |||||||||||||||||||||||||||| ||||||
seq2  TATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTC  189

seq1  CATTGGGGACCCTGTGATCCTATCCAATAGCTGACTGTGAGCATCCACTT  218
      |||||||| ||||||||||| |||||||||||||||||||||||||||||
seq2  CATTGGGGGCCCTGTGATCC-ATCCAATAGCTGACTGTGAGCATCCACTT  238

seq1  CTG  221
      |||
seq2  CTG  241