BAC Information

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BAC

Clone NameB6Ng01-102F24
Chromosome1 (Build37)
Map Location 76,538,788 - 76,719,864
singlet/doubletdoublet
Overlap genenone
Upstream geneSlc4a3, LOC100039069, LOC383531
Downstream geneLOC100039137, Tfdp1-ps, Epha4, LOC100039330
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102F24.bB6Ng01-102F24.g
ACCDH911286DH911287
length1,161809
definitionDH911286|Mus musculus domesticus DNA, BAC clone: B6Ng01-102F24, 5' end.DH911287|Mus musculus domesticus DNA, BAC clone: B6Ng01-102F24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,538,788 - 76,539,965)(76,719,058 - 76,719,864)
sequence
gaattctacatttgatatttaaatatgttctgtgttaagcataatacaag
taccacacaatatgttatatctcaaatcaagcagccccgcttcatgcttg
aaattctcacccaaagccagttccataggtacccagtcgccaatcacagc
tcaagcaatggaagccaacaatgcaaacaacagttctcagactgggaacc
ctgggagggctctctacaataagtagggccagggccccaaaagcaaacat
tcagatgttttgatttgttttgagttgggttttgtcatgaatagctttca
aaaacccaaacttcatgctcagatagaggcagccttgagaactgcagcct
gaagcacacgtgtctaccccaatcccagctgccactcctccctttgcttt
gttgactctggaggaccccaggacaatcccaaaccttcctccagcagcct
ttgtcattatgacagaacctcttggtgagcaaggacaaagatgtcactag
atattcctttcagcagaatcttgtgatctgggcttatgtgtgattcatgg
cactagcatgtcaccctccatcgtttccggttcccgcctttctgtgcact
gaagactaggaaggaaataaccgggacaactaccaccttgctatttttca
attttatgctgcctaagcaatattcataacaagcactgtggtaaatctct
catagactgtcacggtttttctgctgtttgggtgtatttttatatttttg
ttccctctaagtattgaaaacaaattaaatcctgcaaaatagaagaacca
gggaaatacagcaaacaattactcctgccaagcgtgagtatttaacacct
gcgtgcttgggaaacattcaaatcggtttgctttgtatactctgtgaaag
tgctctcgggagctgagggaaaatcttctgggcttgttatttatgtattt
attttcgtttagaaatattggtataggcaggtaggttgagttgcaaatct
cagatacagccatgagattctggactcttggatctggtctggatatcata
ttagagtcagtttggggttataatctgtgaccttggggcgatggaatcat
taagtagacttgtaacctccaatataactcacgttttgtacccgcttatt
tccgtggctaa
gaattctctctttctgtgaaatgtctgacacatttctattggggtagatt
aatctcatagaaatacagtcagatagctaacgacagaagttcccaaggat
gtcttgttgaatagaggaactagtggttccccattcaaagttatgttttc
ttgtcagaaattaataaagacatgaatagatttgctactgtaatatctca
ctatatcatgggtgaaggagtcgaagtcagtttaccattagatataccta
tatacacaaggaaactacagaactacttctaatagacatgttagcttagc
tgtgtctgttaatggatgaatagatatataatgtgtagcattcataccca
gtggagtactattcagccataaagaacaaaattgtgttatttgcaggaaa
atggtaaacaaagtttaaaatcatcatgttatggcaaaaaagccaggtct
agaaaggcagatgaggaatgttctgtctcatacagagattttagatttta
agaggtggagatatgaaagtagaaggaagtatgaagatgggaaaaaataa
ggggaccttacatgtctgaacacagttcaagaatgcagtcctgtgacaat
tctgaaggcttgtgagaaaatgagaaaacaagacaagagtcttgtgaccc
cagtttcttcaaaacacagaattgttattggaatgtatatatgtatgtgt
atgtgtatgtgtgtatatatatatatacctatatggaaaaacagggtttt
gccgactgtggcttggcctttgtgattttatactttacacaggtgacttc
ttcttaacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_76538788_76539965
seq2: B6Ng01-102F24.b_44_1204

seq1  GAATTCTACATTTGATATTTAAATATGTTCTGTGTTAAGCATAATACAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATTTGATATTTAAATATGTTCTGTGTTAAGCATAATACAAG  50

seq1  TACCACACAATATGTTATATCTCAAATCAAGCAGCCCCGCTTCATGCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACACAATATGTTATATCTCAAATCAAGCAGCCCCGCTTCATGCTTG  100

seq1  AAATTCTCACCCAAAGCCAGTTCCATAGGTACCCAGTCGCCAATCACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTCACCCAAAGCCAGTTCCATAGGTACCCAGTCGCCAATCACAGC  150

seq1  TCAAGCAATGGAAGCCAACAATGCAAACAACAGTTCTCAGACTGGGAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCAATGGAAGCCAACAATGCAAACAACAGTTCTCAGACTGGGAACC  200

seq1  CTGGGAGGGCTCTCTACAATAAGTAGGGCCAGGGCCCCAAAAGCAAACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGGGCTCTCTACAATAAGTAGGGCCAGGGCCCCAAAAGCAAACAT  250

seq1  TCAGATGTTTTGATTTGTTTTGAGTTGGGTTTTGTCATGAATAGCTTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGTTTTGATTTGTTTTGAGTTGGGTTTTGTCATGAATAGCTTTCA  300

seq1  AAAACCCAAACTTCATGCTCAGATAGAGGCAGCCTTGAGAACTGCAGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCAAACTTCATGCTCAGATAGAGGCAGCCTTGAGAACTGCAGCCT  350

seq1  GAAGCACACGTGTCTACCCCAATCCCAGCTGCCACTCCTCCCTTTGCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCACACGTGTCTACCCCAATCCCAGCTGCCACTCCTCCCTTTGCTTT  400

seq1  GTTGACTCTGGAGGACCCCAGGACAATCCCAAACCTTCCTCCAGCAGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACTCTGGAGGACCCCAGGACAATCCCAAACCTTCCTCCAGCAGCCT  450

seq1  TTGTCATTATGACAGAACCTCTTGGTGAGCAAGGACAAAGATGTCACTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATTATGACAGAACCTCTTGGTGAGCAAGGACAAAGATGTCACTAG  500

seq1  ATATTCCTTTCAGCAGAATCTTGTGATCTGGGCTTATGTGTGATTCATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCCTTTCAGCAGAATCTTGTGATCTGGGCTTATGTGTGATTCATGG  550

seq1  CACTAGCATGTCACCCTCCATCGTTTCCGGTTCCCGCCTTTCTGTGCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGCATGTCACCCTCCATCGTTTCCGGTTCCCGCCTTTCTGTGCACT  600

seq1  GAAGACTAGGAAGGAAATAACCGGGACAACTACCACCTTGCTATTTTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACTAGGAAGGAAATAACCGGGACAACTACCACCTTGCTATTTTTCA  650

seq1  ATTTTATGCTGCCTAAGCAATATTCATAACAAGCACTGTGGTAAATCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATGCTGCCTAAGCAATATTCATAACAAGCACTGTGGTAAATCTCT  700

seq1  CATAGACTGTCACGGTTTTTCTGCTGTTTGGGTGTATTTTTATATTTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGACTGTCACGGTTTTTCTGCTGTTTGGGTGTATTTTTATATTTTTG  750

seq1  TTCCCTCTAAGTATTGAAAACAAATTAAATCCTGCAAAATAGAAGAACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCTAAGTATTGAAAACAAATTAAATCCTGCAAAATAGAAGAACCA  800

seq1  GGGAAATACAGCAAACAATTACTCCTGCCAAGCGTGAGTATTTAACACCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATACAGCAAACAATTACTCCTGCCAAGCGTGAGTATTTAACACCT  850

seq1  GCGTGCTTGGGAAACATTCAAATCGGTTTGCTTTGTATACTCTGTGAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGCTTGGGAAACATTCAAATCGGTTTGCTTTGTATACTCTGTGAAAG  900

seq1  TGCTCTCGGGAGCTGAGGGAAAATCTTCTGGGCTTGTTATTTATGTATTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCGGGAGCTGAGGGAAAATCTTCTGGGCTTGTTATTTATGTATTT  950

seq1  ATTTTCGTTTAGAAAATATTGGTAATAGGCAAGGTAGGTTGAGTTGCAAA  1000
      |||||||||||| |||||||||| |||||| |||||||||||||||| ||
seq2  ATTTTCGTTTAG-AAATATTGGT-ATAGGC-AGGTAGGTTGAGTTGC-AA  996

seq1  ATCTCAGGATACAGCCATGAGATTCTGGACTCTTGGATCTGGTCTGGATA  1050
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCA-GATACAGCCATGAGATTCTGGACTCTTGGATCTGGTCTGGATA  1045

seq1  TCATATTAGAGTCAGGTTTGGGTTATTAATCTGTGAACTTGGGGCCGGAT  1100
      ||||||||||||||| || |||||| |||||||||| ||||||||  |||
seq2  TCATATTAGAGTCAGTTTGGGGTTA-TAATCTGTGACCTTGGGGC--GAT  1092

seq1  GGATTCCATTAAAGTAAGACTTTGTACACTCCAATATAACTCACGTTTGT  1150
      ||| | |||| |||| |||| |||||  |||||||||||||||||||| |
seq2  GGAAT-CATT-AAGT-AGAC-TTGTAACCTCCAATATAACTCACGTTT-T  1137

seq1  CACCCCGCTTATATTTCTCGGTGGCTAA  1178
         ||||||||    | || ||||||||
seq2  GTACCCGCTTA----TTTCCGTGGCTAA  1161

seq1: chr1_76719058_76719864
seq2: B6Ng01-102F24.g_67_875 (reverse)

seq1  GGTTAAGAAG-AGTCACCTGTGTAAAGTATAAAATCAC-AAGGACAAGCT  48
      |||||||||| ||||||||||||||||||||||||||| |||| ||||| 
seq2  GGTTAAGAAGAAGTCACCTGTGTAAAGTATAAAATCACAAAGGCCAAGCC  50

seq1  GCAGGTGGCAAAAGCATGGTTTTCCATAGAGGTATATATATATATACACA  98
       |||  ||||||| | || ||||||||| |||||||||||||||||||||
seq2  ACAGTCGGCAAAACCCTGTTTTTCCATATAGGTATATATATATATACACA  100

seq1  CATACACATACACATACATATATACATTCCAATAACAATTCTGTGTTTTG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACATACACATACATATATACATTCCAATAACAATTCTGTGTTTTG  150

seq1  AAGAAACTGGGGTCACAAGACTCTTGTCTTGTTTTCTCATTTTCTCACAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACTGGGGTCACAAGACTCTTGTCTTGTTTTCTCATTTTCTCACAA  200

seq1  GCCTTCAGAATTGTCACAGGACTGCATTCTTGAACTGTGTTCAGACATGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCAGAATTGTCACAGGACTGCATTCTTGAACTGTGTTCAGACATGT  250

seq1  AAGGTCCCCTTATTTTTTCCCATCTTCATACTTCCTTCTACTTTCATATC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCCCCTTATTTTTTCCCATCTTCATACTTCCTTCTACTTTCATATC  300

seq1  TCCACCTCTTAAAATCTAAAATCTCTGTATGAGACAGAACATTCCTCATC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTCTTAAAATCTAAAATCTCTGTATGAGACAGAACATTCCTCATC  350

seq1  TGCCTTTCTAGACCTGGCTTTTTTGCCATAACATGATGATTTTAAACTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTCTAGACCTGGCTTTTTTGCCATAACATGATGATTTTAAACTTT  400

seq1  GTTTACCATTTTCCTGCAAATAACACAATTTTGTTCTTTATGGCTGAATA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACCATTTTCCTGCAAATAACACAATTTTGTTCTTTATGGCTGAATA  450

seq1  GTACTCCACTGGGTATGAATGCTACACATTATATATCTATTCATCCATTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCCACTGGGTATGAATGCTACACATTATATATCTATTCATCCATTA  500

seq1  ACAGACACAGCTAAGCTAACATGTCTATTAGAAGTAGTTCTGTAGTTTCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACACAGCTAAGCTAACATGTCTATTAGAAGTAGTTCTGTAGTTTCC  550

seq1  TTGTGTATATAGGTATATCTAATGGTAAACTGACTTCGACTCCTTCACCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTATATAGGTATATCTAATGGTAAACTGACTTCGACTCCTTCACCC  600

seq1  ATGATATAGTGAGATATTACAGTAGCAAATCTATTCATGTCTTTATTAAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATAGTGAGATATTACAGTAGCAAATCTATTCATGTCTTTATTAAT  650

seq1  TTCTGACAAGAAAACATAACTTTGAATGGGGAACCACTAGTTCCTCTATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACAAGAAAACATAACTTTGAATGGGGAACCACTAGTTCCTCTATT  700

seq1  CAACAAGACATCCTTGGGAACTTCTGTCGTTAGCTATCTGACTGTATTTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGACATCCTTGGGAACTTCTGTCGTTAGCTATCTGACTGTATTTC  750

seq1  TATGAGATTAATCTACCCCAATAGAAATGTGTCAGACATTTCACAGAAAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGATTAATCTACCCCAATAGAAATGTGTCAGACATTTCACAGAAAG  800

seq1  AGAGAATTC  807
      |||||||||
seq2  AGAGAATTC  809