BAC Information

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BAC

Clone NameB6Ng01-102G03
Chromosome1 (Build37)15 (Build37)
Map Location 15,388,495 - 15,388,67322,538,695 - 22,539,840
singlet/doubletsingletsinglet
Overlap geneKcnb2
Upstream geneLOC665391, Msc, Smt3h2-ps4, EG665407, Trpa1, EG269105, LOC100039949, LOC100039959
Downstream genePpia-ps1_109.1, Terf1, Gm106, LOC665434, 4930444P10Rik, Rpl7, Rdh10, EG665282, Stau2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102G03.bB6Ng01-102G03.g
ACCDH911291DH911292
length9331,130
definitionDH911291|Mus musculus domesticus DNA, BAC clone: B6Ng01-102G03, 5' end.DH911292|Mus musculus domesticus DNA, BAC clone: B6Ng01-102G03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(15,388,495 - 15,388,673)(22,538,695 - 22,539,840)
sequence
gaattctttgtttagctctgtaccccattttttcttttttctttctttct
ttttttttttttttaggtatttatttcatttacatatctcatttttaata
gggttatttaattctatggagttttacatcttgaattctttgtatatatt
ggatattagccctctatcagatgtagaattgataaagatcttttctcaat
ctgttgcttgcagttttgtcctattaagagtgtcctttgccttacagaag
ctttgcaattttatgagatcccatttgttgattctcttgattctcaatct
tagagcataagccattggtattctgcttaggaaattttcccctgtgccca
tgttttccaggctctttcccactttctcttctattggttttagtggtttt
atgtgaaggtccttgatactcatggacttgagctttttacaaagagatat
gaatggattggtttgcattcttctacctgctgaccttcagttgaaggagc
acaatttgttgaaaatgctgtctgtttttaactgaatggttttagctttc
ttgtcaaagatgaagtgaccatatgtgggttcatttcttcgtctttaatt
ctattccactgatgttcctgcctgtgtctgtaccaatgccatacagtgtt
tatcaccattgttttgtaatacagcttgaggtcagggatggtgattcccc
cagaagttcttttactttgggaatagttttcactatcttgggtgttttgt
tattccaaatgcatttgcaaattggtctttccaactctatggagaattaa
atttttttatgtgtattgcattgaatctgtagatggctttggcaagatgg
ctattgttactatattactcatgtcaatccatgatttttccatcttctga
gatcatctttgatttctttcttcagagatttga
gaattcatcagcctacatcagagttcatcagagtttttcataaaccttaa
tttaatttcatttaattttattactttgatttttttatgtgtgtgaaaat
tagcaattcacttctgctacccttcccttttatgtaagaacacccatttc
ctttcaaagaacacaaattatgtttgtaacagtaatttttagagattttt
catgttattcctttacatttacttattctttactcacaatttctttaatg
gaattaaaaaaatgattgtattaaagccaaaaatgtctcattcttggagt
atattgttcagagagatcaaaatgtctcttttcaaaataaagtgcattaa
gaaaggatttggtcactttagtaggattttttcttttctttgcatgtgtg
tatgaggatgtgggttccatttaatcatttgaaccatatatttctttagt
attttgtatcatgaaagacaacattgaaatttatagcagaaaggatataa
agaataaagaaaacaattaggtagaaaatgattaatcaattgaagcctta
gaaacaatgattaataaattgaaacatcatgtattagaaaaaagtatcct
gccagacaaacagctcttacaaaatatcctaaatactctttattttaata
tgattgaaatattgcaagacaaattcaagaaatcaagaaacctgagatca
ctacttgcctgctctaagggtgaggtagactctacaaattttcctcctgc
ctaagaaggacttacttacaaggttattgcttataaaaatagttcataaa
aactaaattaagtttatataaaacatttgtggacaaaaatgttattttca
ccataatataaccaattttccagttactaacagaaaaatctaatttatag
atttttgtaaaaacttgacatcgattccccctgaacatagtcttctctca
cactcaacaacacacaacaaaaatgaccacagttttcccaagtttctatt
ttctatttgaagtccacttaatgcatacaatgtgcactattgaacatgtt
caaattattctcctctgcacaaatcatacattagttctttgaatattagg
atattcaattttctatgaaacaacctcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_15388495_15388673
seq2: B6Ng01-102G03.b_43_286 (reverse)

seq1  TAAGGCAAAGGACACTGTCAATAATACAAAAAGGCAACCAACAAATTGGG  50
      |||||||||||||||| | ||||  ||||||  |||| ||||| |||| |
seq2  TAAGGCAAAGGACACTCTTAATAGGACAAAACTGCAAGCAACAGATTGAG  50

seq1  AAAA-ATCTTTACCAATCCTAAATCTGATAGAGGGCTAATATCCAATATA  99
      |||| ||||||| |||| ||| ||||||||||||||||||||||||||||
seq2  AAAAGATCTTTATCAATTCTACATCTGATAGAGGGCTAATATCCAATATA  100

seq1  TACAAAGAACTCAAGAAGTTAGACTCCAGAGAACCAAATAACTCTATT--  147
      ||||||||| |||||| || | |||||| ||||  ||||||| |||||  
seq2  TACAAAGAATTCAAGATGTAAAACTCCATAGAATTAAATAACCCTATTAA  150

seq1  --------------------------------------------------  147
                                                        
seq2  AAATGAGATATGTAAATGAAATAAATACCTAAAAAAAAAAAAAAAGAAAG  200

seq1  ------------AAAAATGGGGTACAGAGCTAAACAAAGAATTC  179
                  ||||||||||||||||||||||||||||||||
seq2  AAAGAAAAAAGAAAAAATGGGGTACAGAGCTAAACAAAGAATTC  244

seq1: chr15_22538695_22539840
seq2: B6Ng01-102G03.g_67_1196

seq1  GAATTCATCAGCCTACATCAGAGTTCATCAGAGTTTTTCATAAACCTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAGCCTACATCAGAGTTCATCAGAGTTTTTCATAAACCTTAA  50

seq1  TTTAATTTCATTTAATTTTATTACTTTGATTTTTTTATGTGTGTGAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTCATTTAATTTTATTACTTTGATTTTTTTATGTGTGTGAAAAT  100

seq1  TAGCAATTCACTTCTGCTACCCTTCCCTTTTATGTAAGAACACCCATTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAATTCACTTCTGCTACCCTTCCCTTTTATGTAAGAACACCCATTTC  150

seq1  CTTTCAAAGAACACAAATTATGTTTGTAACAGTAATTTTTAGAGATTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAAGAACACAAATTATGTTTGTAACAGTAATTTTTAGAGATTTTT  200

seq1  CATGTTATTCCTTTACATTTACTTATTCTTTACTCACAATTTCTTTAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTATTCCTTTACATTTACTTATTCTTTACTCACAATTTCTTTAATG  250

seq1  GAATTAAAAAAATGATTGTATTAAAGCCAAAAATGTCTCATTCTTGGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAAAAAAATGATTGTATTAAAGCCAAAAATGTCTCATTCTTGGAGT  300

seq1  ATATTGTTCAGAGAGATCAAAATGTCTCTTTTCAAAATAAAGTGCATTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTTCAGAGAGATCAAAATGTCTCTTTTCAAAATAAAGTGCATTAA  350

seq1  GAAAGGATTTGGTCACTTTAGTAGGATTTTTTCTTTTCTTTGCATGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGATTTGGTCACTTTAGTAGGATTTTTTCTTTTCTTTGCATGTGTG  400

seq1  TATGAGGATGTGGGTTCCATTTAATCATTTGAACCATATATTTCTTTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGGATGTGGGTTCCATTTAATCATTTGAACCATATATTTCTTTAGT  450

seq1  ATTTTGTATCATGAAAGACAACATTGAAATTTATAGCAGAAAGGATATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTATCATGAAAGACAACATTGAAATTTATAGCAGAAAGGATATAA  500

seq1  AGAATAAAGAAAACAATTAGGTAGAAAATGATTAATCAATTGAAGCCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAAGAAAACAATTAGGTAGAAAATGATTAATCAATTGAAGCCTTA  550

seq1  GAAACAATGATTAATAAATTGAAACATCATGTATTAGAAAAAAGTATCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAATGATTAATAAATTGAAACATCATGTATTAGAAAAAAGTATCCT  600

seq1  GCCAGACAAACAGCTCTTACAAAATATCCTAAATACTCTTTATTTTAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGACAAACAGCTCTTACAAAATATCCTAAATACTCTTTATTTTAATA  650

seq1  TGATTGAAATATTGCAAGACAAATTCAAGAAATCAAGAAACCTGGGATCA  700
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGATTGAAATATTGCAAGACAAATTCAAGAAATCAAGAAACCTGAGATCA  700

seq1  CTACTTGCCTGCTCTAAGGGTGAGGTAGACTCTACAAATTTTCCTCCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTGCCTGCTCTAAGGGTGAGGTAGACTCTACAAATTTTCCTCCTGC  750

seq1  CTAAGAAGGACTTACTTACAAGGTTATTGCTTATAAAAATAGTTCATAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAAGGACTTACTTACAAGGTTATTGCTTATAAAAATAGTTCATAAA  800

seq1  AACTAAATTAAGTTTATATAAAACATTTGTGGACAAAAATGTTATTTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAATTAAGTTTATATAAAACATTTGTGGACAAAAATGTTATTTTCA  850

seq1  CCATAATATAACCAATTTTCCAGTTACTAACAGAAAAATCTAATTTATAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAATATAACCAATTTTCCAGTTACTAACAGAAAAATCTAATTTATAG  900

seq1  ATTTTTGTAAAAAACTTGACATCGATTCCCCCTGAACATAGTCTTCTCTC  950
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGT-AAAAACTTGACATCGATTCCCCCTGAACATAGTCTTCTCTC  949

seq1  ACCACTCAACAACAACAACAACAAAAAATGACCACAGTTTTCCCAAGTTT  1000
      | ||||||||||||   ||||| |||||||||||||||||||||||||||
seq2  A-CACTCAACAACA--CACAAC-AAAAATGACCACAGTTTTCCCAAGTTT  995

seq1  CTATTTTCTATTTGAAGTCCACTTAATGCATACAATTGTGCACTA-TGAA  1049
      ||||||||||||||||||||||||||||||||||| ||||||||| ||||
seq2  CTATTTTCTATTTGAAGTCCACTTAATGCATACAA-TGTGCACTATTGAA  1044

seq1  CAATGTTCAAATTATTTCTCCTCTGCACCAAATCATAACCATTTAGTTCT  1099
      | |||||||||||| |||||||||||| |||||||||  || ||||||||
seq2  C-ATGTTCAAATTA-TTCTCCTCTGCA-CAAATCATA--CA-TTAGTTCT  1088

seq1  TATGAAATAATTAGGATATTCCATATTTTCTATGAAACAACTTCTTG  1146
      | ||||   ||||||||||||   ||||||||||||||||| |||||
seq2  T-TGAA--TATTAGGATATTC--AATTTTCTATGAAACAACCTCTTG  1130