BAC Information

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BAC

Clone NameB6Ng01-102H11
Chromosome1 (Build37)
Map Location 112,270,125 - 112,271,073
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666508, Cdh7
Downstream geneLOC100041429, EG626652, Cdh19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102H11.bB6Ng01-102H11.g
ACCDH911351DH911352
length1,218936
definitionDH911351|Mus musculus domesticus DNA, BAC clone: B6Ng01-102H11, 5' end.DH911352|Mus musculus domesticus DNA, BAC clone: B6Ng01-102H11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgtagggaaatgtgtagaaggtaaaaaaaaaaaactaagatgc
aggccatctttggatcaatatgatctagatgtgtaatctgcaatttcctt
tctcccgaagtaacaccttctcagcctcagctgatagtttccttgggtta
tttaaatctttatcaccttgtaaggttttaaataaattgcttagctcttg
agtggccaagccaatcacaggctacagccagtttatatctccaagtagct
tctcaaaatctgtaagggttctcagttggtttcttctgatttgcaccttt
tgtggcctaaccatttatagacttattttaaaccttatttaattaataga
ataccctctttgtttttttttttttttttttcaggagtgatttgtaatcc
ccagcaaggcaagatttctttttacttcatcaaacattcttccctgatag
ttatatctgcatcagccaatgtgatgccatccatataatgataaataaca
gattggataattgcttgccaatcatctccaatgtctgtttttcaaaatat
tgacataagataggactatttaacattcattgtggaaggactttccaatg
ataccttttgtttagaaacctctattgaaggtaggtactgagaaagcaac
cccttccttatgacattctcatagagtaattgtgtaaaaacaatcttgca
gatcaatcactatgataggccatcccttaggcaacaagtaaggcactgga
tttctaggctgcaaggaacctattggctgaataatcttattaatcaccct
gagatctgtcaacatcttacacttaccagattcttttttttaaatgacaa
tactggagaaatccaaggattggttgactcctctatatgctgagcatcca
gctattcctggactagctgtctaatgcctatagtggctttgttgttgttt
ttgttttttgtgttttttttttttttttttttggccaagaccattgatca
atccaaatgggtgtcagtcaacgactttagtggtaaggctgttggggtct
tgcagcatgccttctgggtagagctaatttgtcagccctctgtgtatctt
gttatgacagcctgacagctgtaactgccttgaacgttctctaacatata
aatgattaggctgagtcagctgactgaactcgaggaatatggttccatgc
tggtaaacaccctcctcc
gaattcagaaatctacctgccactgcctcccaattgctaggattacaggc
atgcgctaccactgcccagccaaaagaggctgaatttaatcatctctcat
tcaaataaaaataaagaatattttaattatgagttgtggtaataaaaatt
tgctgtccattaagggatgttatgtatagtttccatagtgcactccagcc
tcctgtgtttgctaattggcattgtacaaaatgcttctctctctctctct
ctctctctctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgt
gtatccaagatcaaacaactcaggccttatgtttgcactaaatcattttc
catgattgaaccagtgatcaatctgtgttttgtttacttgatgatatgat
tatgattcagaaaaggaactctgtgtctacaacacagatatattaaagct
gtgatatttgccaaataacttttatctttcaaagaggcaaagaaaaaagt
caatggtaagggcttttctaaaggaaatgttctaaagaaaaggatggaaa
gtaataaagaaagtcagaaaaattattctgaagtgtttctccaagctaag
aagagaatgctgttttggtgaaaaaacaattgaaaagaaatggattttca
agtttttcctcagtcattaagcaatatacagaaaattcttgtatctgaaa
agtttagagttttaaatccattcaagaacttagagtgatttcacaattca
tactagtgatgtgaaaaactaatttgacaggcaagatgtttgaatagttt
tttattacaaaattgaccttcacaaagaaagatataaagagagaaactaa
agaaagtttgggggaatatgtttaaagccatttttgacaataccatttag
ttccactatttctgatgctggaaaggttattctaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_112270125_112271073
seq2: B6Ng01-102H11.g_68_1003 (reverse)

seq1  TTTAGAAATATACTTTCAAGCATCAGAAATAGTGGAAACTAAATGGTATT  50
      ||||| ||||  ||||| ||||||||||||||||| |||||||||||| |
seq2  TTTAG-AATAACCTTTCCAGCATCAGAAATAGTGG-AACTAAATGGTA-T  47

seq1  TGTCAAAAATAGGCTTTTAAACATATTTCCCACAATACTTTCTTTAGTTT  100
      |||||||||| ||| |||||||||| ||||| ||| ||||||||||||||
seq2  TGTCAAAAAT-GGC-TTTAAACATA-TTCCCCCAA-ACTTTCTTTAGTTT  93

seq1  CTCTCTTTTATATTCTTTCCTTTTGTGAAGGTCAATTTTGTAATAAAAAG  150
      ||||| |||||| ||||||  |||||||||||||||||||||||||||| 
seq2  CTCTC-TTTATA-TCTTTC--TTTGTGAAGGTCAATTTTGTAATAAAAAA  139

seq1  CTATTCAAAACATCTTGCCTGTCAAATTAGTTTTTCACATCACTAGTATG  200
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTC-AAACATCTTGCCTGTCAAATTAGTTTTTCACATCACTAGTATG  188

seq1  AATTGTTGAAATCACTCTAAGTTCTTGAATGGATTTAAAACTCTAAAACT  250
      ||||| |||||||||||||||||||||||||||||||||||||| |||||
seq2  AATTG-TGAAATCACTCTAAGTTCTTGAATGGATTTAAAACTCT-AAACT  236

seq1  TTTCAGATACAAGAATTTTCTGTATATTGCTTAATGACTGAGG-AAAACT  299
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTTCAGATACAAGAATTTTCTGTATATTGCTTAATGACTGAGGAAAAACT  286

seq1  TGAAAATCCATTTCTTTTCAATTGTTTTTTCACCAAAACAGCATTCTCTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATCCATTTCTTTTCAATTGTTTTTTCACCAAAACAGCATTCTCTT  336

seq1  CTTAGCTTGGAGAAACACTTCAGAATAATTTTTCTGACTTTCTTTATTAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTTGGAGAAACACTTCAGAATAATTTTTCTGACTTTCTTTATTAC  386

seq1  TTTCCATCCTTTTCTTTAGAACATTTCCTTTAGAAAAGCCCTTACCATTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATCCTTTTCTTTAGAACATTTCCTTTAGAAAAGCCCTTACCATTG  436

seq1  ACTTTTTTCTTTGCCTCTTTGAAAGATAAAAGTTATTTGGCAAATATCAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTTCTTTGCCTCTTTGAAAGATAAAAGTTATTTGGCAAATATCAC  486

seq1  AGCTTTAATATATCTGTGTTGTAGACACAGAGTTCCTTTTCTGAATCATA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTAATATATCTGTGTTGTAGACACAGAGTTCCTTTTCTGAATCATA  536

seq1  ATCATATCATCAAGTAAACAAAACACAGATTGATCACTGGTTCAATCATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATCATCAAGTAAACAAAACACAGATTGATCACTGGTTCAATCATG  586

seq1  GAAAATGATTTAGTGCAAACATAAGGCCTGAGTTGTTTGATCTTGGATAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGATTTAGTGCAAACATAAGGCCTGAGTTGTTTGATCTTGGATAC  636

seq1  ACACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAG  686

seq1  AGAGAGAGAGAGAGAAGCATTTTGTACAATGCCAATTAGCAAACACAGGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAAGCATTTTGTACAATGCCAATTAGCAAACACAGGA  736

seq1  GGCTGGAGTGCACTATGGAAACTATACATAACATCCCTTAATGGACAGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGAGTGCACTATGGAAACTATACATAACATCCCTTAATGGACAGCA  786

seq1  AATTTTTATTACCACAACTCATAATTAAAATATTCTTTATTTTTATTTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTATTACCACAACTCATAATTAAAATATTCTTTATTTTTATTTGA  836

seq1  ATGAGAGATGATTAAATTCAGCCTCTTTTGGCTGGGCAGTGGTAGCGCAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAGATGATTAAATTCAGCCTCTTTTGGCTGGGCAGTGGTAGCGCAT  886

seq1  GCCTGTAATCCTAGCAATTGGGAGGCAGTGGCAGGTAGATTTCTGAATTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTAATCCTAGCAATTGGGAGGCAGTGGCAGGTAGATTTCTGAATTC  936