BAC Information

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BAC

Clone NameB6Ng01-102H12
Chromosome1 (Build37)
Map Location 178,451,464 - 178,614,511
singlet/doubletdoublet
Overlap genenone
Upstream geneFh1, Kmo, Opn3, Chml, Wdr64, Exo1, Gm104, Pld5, B020018G12Rik
Downstream geneCep170, Sdccag8, LOC666235, Akt3, Zfp238, EG631449, LOC100040770
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102H12.bB6Ng01-102H12.g
ACCDH911353DH911354
length1,0931,168
definitionDH911353|Mus musculus domesticus DNA, BAC clone: B6Ng01-102H12, 5' end.DH911354|Mus musculus domesticus DNA, BAC clone: B6Ng01-102H12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(178,451,464 - 178,452,548)(178,613,372 - 178,614,511)
sequence
gaattctgatttaataaacttttaattatgtattaattagaactaataaa
atctcaaactgggggtaaaggaaaaatgatatattggaactagaggatca
gatcaaaatgaggtctgataaatgccacaatgagtttaaagtgaggactt
ggggacctgggaagatggcttagccagcaaagtgctgtctgttccagcat
gaggccctgagttagatctccaagatgcacatgagaggctgagcaaaaag
ccaggtacacacatgcatttgcaattccttctctagagtgatggaaacaa
ggctagacctagggtgatggccagccagcctagtcaaaggagtctatgcc
agatcccaatgagagacagagagatggctcagtggtaaaagcacatactg
ctctcacagaggacttgagtttggcacccacattgggtatcttacaccct
cctgaaactctagctacagaggatccaaaacccccttctggcttccatgg
gtaactgtattaatgtgcacatactcctacatagacactcatatatgtac
aattaaaaataaaacatattttttgaaaagatggataactcttgggaaac
aacaccaagcttgaacttagaccttcacatatatttgcacacacttcata
tacacttgcctactcttaaaactacacataaacacacacacacaataggg
ataggaagtatttccttgactcttcaagaactatttctaagggctggaga
tatggctcagttgttaagagtgtttgctgttctttcaggggacactggtt
tgattcccataacacataatgacagctcacaaccatctgtttgatttcac
ttccagggaatcttctgggctcttcagacaccggtacttacttggcccac
agacatacagagaagcaaacatttattaaataaatagatcaataaataaa
taaataaattttagaagaaatccctctaaataactgttgaacccattaaa
actaaatgagcattggaaactgtgtctgtgactgggttcatggattattt
agggaaaagatccagaatactgctgaaagaaatgagacacaaa
gaattccccatggaggacacatgaggtcatgtgtgccataagaaacagtg
gaactctagtcagagaaccaaagtatggtcgatgaaaggagggagaaaag
agtatcacgtgctctgaacttggcaaacaaagaagagtggtggtatcaat
gcgtggggaacagcgggacagtgctcaggcaacctgggagcatcctcact
taggatgtgccaatggttgctcaatattcatgtctccagatctagaatgc
cacttagtacaatagtcagaagtgtggaaataattaatgaggatcaacgt
tttagttgcccagaagaactgctagctttccacctgtgattgctttttgt
cacctcagccattgattctgtgaggaagacactccaggaaaataagtaac
ccatcccttgtctgttttgacataggatatgaacatgaacccctggctgg
cctggaactcactctgaggaccaggctggccttgaactcacagagatcgg
cctgcctctgcctccatactgctgggattaaaggcctgtgccaccatgcc
ggagccttcatccataatttcgcccagctataattactataaaaagattt
aaactcaagttgtcttattttaaataactcattagtctgtgactcctttc
cctttcttcctcccttttccccggacccccttccctcccttctgtcttct
ctccctcctttctcatttctcaaacacatatttagggcattgcataggtt
cctgagttacaacaatagacaaagttcttgttctctgggagaaggggaca
cacacacacacacacacacacacacacacacgaacagactcagaaaggaa
acttccttcatgacagtaaaaacagtatggaagttatagcccttcctatt
tatttgccttgcaacaaccaccaccaaacaatcccgtttcttcttggtcc
tgggagagcagggaagattgtcacaagacacattctgcggttcttcttct
ttcaaaggacttttggcacttgggagcttggtgacagacaaagtccgcct
ggaggcagccatgcttgctgcagctgaacaaacttccacactggtttcat
tcccgaggcaagtgactgagacctgggcctgtcgtcattgttcgacaggt
gtgacatgagaccaaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_178451464_178452548
seq2: B6Ng01-102H12.b_43_1135

seq1  GAATTCTGATTTAATAAACTTTTAATTATGTATTAATTAGAACTAATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATTTAATAAACTTTTAATTATGTATTAATTAGAACTAATAAA  50

seq1  ATCTCAAACTGGGGGTAAAGGAAAAATGATATATTGGAACTAGAGGATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAAACTGGGGGTAAAGGAAAAATGATATATTGGAACTAGAGGATCA  100

seq1  GATCAAAATGAGGTCTGATAAATGCCACAATGAGTTTAAAGTGAGGACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAAATGAGGTCTGATAAATGCCACAATGAGTTTAAAGTGAGGACTT  150

seq1  GGGGACCTGGGAAGATGGCTTAGCCAGCAAAGTGCTGTCTGTTCCAGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACCTGGGAAGATGGCTTAGCCAGCAAAGTGCTGTCTGTTCCAGCAT  200

seq1  GAGGCCCTGAGTTAGATCTCCAAGATGCACATGAGAGGCTGAGCAAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCCTGAGTTAGATCTCCAAGATGCACATGAGAGGCTGAGCAAAAAG  250

seq1  CCAGGTACACACATGCATTTGCAATTCCTTCTCTAGAGTGATGGAAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTACACACATGCATTTGCAATTCCTTCTCTAGAGTGATGGAAACAA  300

seq1  GGCTAGACCTAGGGTGATGGCCAGCCAGCCTAGTCAAAGGAGTCTATGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGACCTAGGGTGATGGCCAGCCAGCCTAGTCAAAGGAGTCTATGCC  350

seq1  AGATCCCAATGAGAGACAGAGAGATGGCTCAGTGGTAAAAGCACATACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCCAATGAGAGACAGAGAGATGGCTCAGTGGTAAAAGCACATACTG  400

seq1  CTCTCACAGAGGACTTGAGTTTGGCACCCACATTGGGTATCTTACACCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACAGAGGACTTGAGTTTGGCACCCACATTGGGTATCTTACACCCT  450

seq1  CCTGAAACTCTAGCTACAGAGGATCCAAAACCCCCTTCTGGCTTCCATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAACTCTAGCTACAGAGGATCCAAAACCCCCTTCTGGCTTCCATGG  500

seq1  GTAACTGTATTAATGTGCACATACTCCTACATAGACACTCATATATGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTGTATTAATGTGCACATACTCCTACATAGACACTCATATATGTAC  550

seq1  AATTAAAAATAAAACATATTTTTTGAAAAGATGGATAACTCTTGGGAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAAATAAAACATATTTTTTGAAAAGATGGATAACTCTTGGGAAAC  600

seq1  AACACCAAGCTTGAACTTAGACCTTCACATATATTTGCACACACTTCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCAAGCTTGAACTTAGACCTTCACATATATTTGCACACACTTCATA  650

seq1  TACACTTGCCTACTCTTAAAACTACACATAAACACACACACACAATAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTTGCCTACTCTTAAAACTACACATAAACACACACACACAATAGGG  700

seq1  ATAGGAAGTATTTCCTTGACTCTTCAAGAACTATTTCTAAGGGCTGGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAGTATTTCCTTGACTCTTCAAGAACTATTTCTAAGGGCTGGAGA  750

seq1  TATGGCTCAGTTGTTAAGAGTGTTTGCTGTTCTTTCAGGGGACACTGGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCTCAGTTGTTAAGAGTGTTTGCTGTTCTTTCAGGGGACACTGGTT  800

seq1  TGATTCCCATAACACATAATGACAGCTCACAACCATCTGTTTGATTTCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCCCATAACACATAATGACAGCTCACAACCATCTGTTTGATTTCAC  850

seq1  TTCCAGGGAATCTTCTGGGCTCTTCAGACACCGGTACTTACTTGGCCCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGGAATCTTCTGGGCTCTTCAGACACCGGTACTTACTTGGCCCAC  900

seq1  AGACATACAGAGAAGCAAAACATTTATTAAATAAATAGATAAATAAATAA  950
      |||||||||||||||| ||||||||||||||||||||||| |||||||||
seq2  AGACATACAGAGAAGC-AAACATTTATTAAATAAATAGATCAATAAATAA  949

seq1  ATAAATAAATTTTAG-AGAAATCCCTCTAAATAACTG-TGAACCCA-TAA  997
      ||||||||||||||| ||||||||||||||||||||| |||||||| |||
seq2  ATAAATAAATTTTAGAAGAAATCCCTCTAAATAACTGTTGAACCCATTAA  999

seq1  AACTAAATGAGCATT-GAAACTGTGTCTGTGACTGGG-TCATGGA-TATA  1044
      ||||||||||||||| ||||||||||||||||||||| ||||||| ||| 
seq2  AACTAAATGAGCATTGGAAACTGTGTCTGTGACTGGGTTCATGGATTATT  1049

seq1  TAGG--AAAGATCCAG-ATACTGCTGATAGGAATGAGACACAAA  1085
      ||||  |||||||||| |||||||||| || |||||||||||||
seq2  TAGGGAAAAGATCCAGAATACTGCTGAAAGAAATGAGACACAAA  1093

seq1: chr1_178613372_178614511
seq2: B6Ng01-102H12.g_70_1237 (reverse)

seq1  CATTT-GTCTCATGCCAC-CCTGTCG-ACAATGACAGCA-GCCCAGGTCT  46
      ||||| |||||||| ||| ||||||| ||||||||  || ||||||||||
seq2  CATTTGGTCTCATGTCACACCTGTCGAACAATGACGACAGGCCCAGGTCT  50

seq1  CAGTCAC-TGCCTCGGGAATG-AACCAGTGTGGA--GTTGTTCAGCTGCC  92
      ||||||| ||||||||||||| ||||||||||||   ||||||||||| |
seq2  CAGTCACTTGCCTCGGGAATGAAACCAGTGTGGAAGTTTGTTCAGCTG-C  99

seq1  AGC-AGCATGGCTGCCTCCA-GCGG-CTTTGTCTGTCA-CAAGCTCC--A  136
      ||| |||||||||||||||| |||| |||||||||||| ||||||||  |
seq2  AGCAAGCATGGCTGCCTCCAGGCGGACTTTGTCTGTCACCAAGCTCCCAA  149

seq1  GTGCC-AAAGTCC-TTGGAAGAAG-AGAACCGCAG-ATGTGTC-TGTGAC  181
      ||||| ||||||| ||| |||||| |||||||||| ||||||| ||||||
seq2  GTGCCAAAAGTCCTTTGAAAGAAGAAGAACCGCAGAATGTGTCTTGTGAC  199

seq1  -ATCTTCCCTGCTCT-CCAGG-CCA--GAGGAACGGG-TTGTTTGGTGGT  225
       |||||||||||||| ||||| |||   || |||||| ||||||||||||
seq2  AATCTTCCCTGCTCTCCCAGGACCAAGAAGAAACGGGATTGTTTGGTGGT  249

seq1  GG-TGTTGCAAGGC-AATAAATAGGAA-GGCTATAACTTCCATACTG-TT  271
      || ||||||||||| |||||||||||| ||||||||||||||||||| ||
seq2  GGTTGTTGCAAGGCAAATAAATAGGAAGGGCTATAACTTCCATACTGTTT  299

seq1  TTACTGTCATGAAGG-AGTTTTCTTTCTTGAGTCTGTTCGTGTGTGTGTG  320
      ||||||||||||||| ||||| ||||| ||||||||||||||||||||||
seq2  TTACTGTCATGAAGGAAGTTTCCTTTC-TGAGTCTGTTCGTGTGTGTGTG  348

seq1  TGTGTGTGTGTGTGTGTGTGTGTCCCCTTCTCCCAGAGAACAAGAACTTT  370
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTCCCCTTCTCCCAGAGAACAAGAACTTT  398

seq1  GTCTATTGTTGTAACTCAGGAACCTATGCAATGCCCTAAATATGTGTTTG  420
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATTGTTGTAACTCAGGAACCTATGCAATGCCCTAAATATGTGTTTG  448

seq1  AGAAATGAGAAAGGAGGGAGAGAAGACAGAAGGGAGGGAAGGGGGTCCGG  470
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGAGAAAGGAGGGAGAGAAGACAGAAGGGAGGGAAGGGGGTCCGG  498

seq1  GGAAAAGGGAGGAAGAAAGGGAAAGGAGTCACAGACTAATGAGTTATTTA  520
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGGGAGGAAGAAAGGGAAAGGAGTCACAGACTAATGAGTTATTTA  548

seq1  AAATAAGACAACTTGAGTTTAAATCTTTTTATAGTAATTATAGCTGGGCG  570
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGACAACTTGAGTTTAAATCTTTTTATAGTAATTATAGCTGGGCG  598

seq1  AAATTATGGATGAAGGCTCCGGCATGGTGGCACAGGCCTTTAATCCCAGC  620
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATGGATGAAGGCTCCGGCATGGTGGCACAGGCCTTTAATCCCAGC  648

seq1  AGTATGGAGGCAGAGGCAGGCCGATCTCTGTGAGTTCAAGGCCAGCCTGG  670
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGGAGGCAGAGGCAGGCCGATCTCTGTGAGTTCAAGGCCAGCCTGG  698

seq1  TCCTCAGAGTGAGTTCCAGGCCAGCCAGGGGTTCATGTTCATATCCTATG  720
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGAGTGAGTTCCAGGCCAGCCAGGGGTTCATGTTCATATCCTATG  748

seq1  TCAAAACAGACAAGGGATGGGTTACTTATTTTCCTGGAGTGTCTTCCTCA  770
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACAGACAAGGGATGGGTTACTTATTTTCCTGGAGTGTCTTCCTCA  798

seq1  CAGAATCAATGGCTGAGGTGACAAAAAGCAATCACAGGTGGAAAGCTAGC  820
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCAATGGCTGAGGTGACAAAAAGCAATCACAGGTGGAAAGCTAGC  848

seq1  AGTTCTTCTGGGCAACTAAAACGTTGATCCTCATTAATTATTTCCACACT  870
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTCTGGGCAACTAAAACGTTGATCCTCATTAATTATTTCCACACT  898

seq1  TCTGACTATTGTACTAAGTGGCATTCTAGATCTGGAGACATGAATATTGA  920
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTATTGTACTAAGTGGCATTCTAGATCTGGAGACATGAATATTGA  948

seq1  GCAACCATTGGCACATCCTAAGTGAGGATGCTCCCAGGTTGCCTGAGCAC  970
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCATTGGCACATCCTAAGTGAGGATGCTCCCAGGTTGCCTGAGCAC  998

seq1  TGTCCCGCTGTTCCCCACGCATTGATACCACCACTCTTCTTTGTTTGCCA  1020
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCGCTGTTCCCCACGCATTGATACCACCACTCTTCTTTGTTTGCCA  1048

seq1  AGTTCAGAGCACGTGATACTCTTTTCTCCCTCCTTTCATCGACCATACTT  1070
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGAGCACGTGATACTCTTTTCTCCCTCCTTTCATCGACCATACTT  1098

seq1  TGGTTCTCTGACTAGAGTTCCACTGTTTCTTATGGCACACATGACCTCAT  1120
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTCTGACTAGAGTTCCACTGTTTCTTATGGCACACATGACCTCAT  1148

seq1  GTGTCCTCCATGGGGAATTC  1140
      ||||||||||||||||||||
seq2  GTGTCCTCCATGGGGAATTC  1168