BAC Information

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BAC

Clone NameB6Ng01-102M11
Chromosome1 (Build37)
Map Location 172,326,762 - 172,460,155
singlet/doubletdoublet
Overlap geneNos1ap
Upstream geneEG383613, Nuf2, Rgs5, Rgs4, LOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik
Downstream geneLOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102M11.bB6Ng01-102M11.g
ACCDH911573DH911574
length1,159949
definitionDH911573|Mus musculus domesticus DNA, BAC clone: B6Ng01-102M11, 5' end.DH911574|Mus musculus domesticus DNA, BAC clone: B6Ng01-102M11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(172,326,762 - 172,327,934)(172,459,033 - 172,460,155)
sequence
gaattctggcagtgctaccagcagtcatttaccctgttttagtttcctga
atacaagcacatctctaccacaaactgtgcataactctgaagagatggct
ataacataaagggttttcatgaaagacatctgttcttactgatagtttag
taacatccatagtgatgttaaaaaaaaaaaagccaagtgcagccaagttc
ataacactatcattcacaatagtcaaaagtttgaagcaggagctggtgag
atggctcagtgggtaagaccactgactgcccttctggaaatcctgagttc
aaatcccagcaacaacatggtggctcacaaccatccataataagatctga
ggccctcttctggtgcatctgaagtcagcttcagtgtactaatgtataat
aataataaataaaatctttgggccagagaaagcagggactgaagagagca
gggccaaccgcagcaagcaggggtcctaaaaatgcattctccaacaacca
catgaaggctcacaaccatttgtacagctacagtgtactcacacaggtaa
aataaataagtaaatcttttaaaaagttggaagcaacctgtgttggtaga
tggatgaatggacaccaagtgttatccatcttagacagcagaatactatt
cagtcttaaagggaaggcagttgtgctatgtgaaataagccagttacaaa
atcacaagtatttcgggagtccactcttaccaggttcccaggatggtcaa
attttttagatgcagatggtggtggggttgattgcagagactgatatgtg
gaaaatggggatattatgggttcagcttcagagagttgtattaatttggg
aattttttttagaaacgaattcacctcaagttatatatatatatattcca
agctcacctcaagttcaaagttctcctgcctcagctttctgaacattaga
attacatcacaaaacggctggaactggacgtggcagaggctgtggtacga
catactcaccgctgcaccattttaaattgaaaatggtagatggtaagttt
ggtacacatctttacacattcaagaacaaccgggttgatctcgctgaaca
tctggtacccacggactgtcaattgacttggggtaattttgctctgtatg
cagggtgtg
gaattccaacttaagagtcctaaaccaaaccaaccctctctcccccttca
gaacacggtccaagagtggagttgtgtgagaagatttctgagtgcttgtg
agaaaattccaaaggaaacaaggtgtgagtctggtgacctcaggtttttc
agaacacagaattgttcctggaatgcgatttcgtgctcctcccaggcgca
gcagataggagtgagtttacttcagctgtagttagccatgtgcctcgatg
gagagacatgtttttgcctcctgcggcttgtccttgtgattgaagacttt
ttgcaggggatttcttagcctgcagagtattaattgtctgatgctctgaa
taaagttgggtattggatgagatgttagcgggcctcagttcacaccatca
gctctagcagtgaacatttccttaagtttctctttttgttcagggtgttt
tatcaaagccacaaagtgaaagaaggacaaacatcccctccttagctctt
cctccatttggtttgcattgttccctcagtctcctgctttcaagccttgt
tgcccttccatgcctcggtgatggcagtgggcttgtttgctaggacaagt
agcctttgagaagtgtgaagccttgatgacagtgtggtttacagacgaga
agggctgctctacacagaagagagcctgtgggcaccgcagtgaagagatg
gagttacaggaatgagaaaaaagattgaatctacagagacactgtctagc
ttgcataggagcaatttttgtagatagggtctcacaatgaagcccaggtt
ggtctatctggaactcactgtgtagcctaggctagcccaagacttgcagc
agtctttctactttctctcagtctttactttctcttcctcctcctctccc
ttctgctttctcttctctcttctctctctctctctctcttcttcttctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_172326762_172327934
seq2: B6Ng01-102M11.b_46_1203

seq1  GAATTCTGGCAGTGCTACCAGCAGTCATTTACCCTGTTTTAGTTTCCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGCAGTGCTACCAGCAGTCATTTACCCTGTTTTAGTTTCCTGA  50

seq1  ATACAAGCACATCTCTACCACAAACTGTGCATAACTCTGAAGAGATGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGCACATCTCTACCACAAACTGTGCATAACTCTGAAGAGATGGCT  100

seq1  ATAACATAAAGGGTTTTCATGAAAGACATCTGTTCTTACTGATAGTTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATAAAGGGTTTTCATGAAAGACATCTGTTCTTACTGATAGTTTAG  150

seq1  TAACATCCATAGTGATGTTAAAAAAAAAAAAGCCAAGTGCAGCCAAGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATCCATAGTGATGTTAAAAAAAAAAAAGCCAAGTGCAGCCAAGTTC  200

seq1  ATAACACTATCATTCACAATAGTCAAAAGTTTGAAGCAGGAGCTGGTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACACTATCATTCACAATAGTCAAAAGTTTGAAGCAGGAGCTGGTGAG  250

seq1  ATGGCTCAGTGGGTAAGACCACTGACTGCCCTTCTGGAAATCCTGAGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCAGTGGGTAAGACCACTGACTGCCCTTCTGGAAATCCTGAGTTC  300

seq1  AAATCCCAGCAACAACATGGTGGCTCACAACCATCCATAATAAGATCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCAGCAACAACATGGTGGCTCACAACCATCCATAATAAGATCTGA  350

seq1  GGCCCTCTTCTGGTGCATCTGAAGTCAGCTTCAGTGTACTAATGTATAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTCTTCTGGTGCATCTGAAGTCAGCTTCAGTGTACTAATGTATAAT  400

seq1  AATAATAAATAAAATCTTTGGGCCAGAGAAAGCAGGGACTGAAGAGAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAAATAAAATCTTTGGGCCAGAGAAAGCAGGGACTGAAGAGAGCA  450

seq1  GGGCCAACCGCAGCAAGCAGGGGTCCTAAAAATGCATTCTCCAACAACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAACCGCAGCAAGCAGGGGTCCTAAAAATGCATTCTCCAACAACCA  500

seq1  CATGAAGGCTCACAACCATTTGTACAGCTACAGTGTACTCACACAGGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGGCTCACAACCATTTGTACAGCTACAGTGTACTCACACAGGTAA  550

seq1  AATAAATAAGTAAATCTTTTAAAAAGTTGGAAGCAACCTGTGTTGGTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAGTAAATCTTTTAAAAAGTTGGAAGCAACCTGTGTTGGTAGA  600

seq1  TGGATGAATGGACACCAAGTGTTATCCATCTTAGACAGCAGAATACTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGAATGGACACCAAGTGTTATCCATCTTAGACAGCAGAATACTATT  650

seq1  CAGTCTTAAAGGGAAGGCAGTTGTGCTATGTGAAATAAGCCAGTTACAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTAAAGGGAAGGCAGTTGTGCTATGTGAAATAAGCCAGTTACAAA  700

seq1  ATCACAAGTATTTCGGGAGTCCACTCTTACCAGGTTCCCAGGATGGTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAAGTATTTCGGGAGTCCACTCTTACCAGGTTCCCAGGATGGTCAA  750

seq1  ATTTTTTAGATGCAGATGGTGGTGGGGTTGATTGCAGAGACTGATATGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTAGATGCAGATGGTGGTGGGGTTGATTGCAGAGACTGATATGTG  800

seq1  GAAAATGGGGATATTATGGGTTCAGCTTCAGAGAGTTGTATTAATTTGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGGGGATATTATGGGTTCAGCTTCAGAGAGTTGTATTAATTTGGG  850

seq1  AATTTTTTTTAGAAACGAATTCACCTCAAGTTATATATATATATATTCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTTTAGAAACGAATTCACCTCAAGTTATATATATATATATTCCA  900

seq1  AGCTCACCTCAAGTTCAAAGTCCTCCTGCCTCAGCTTTCTGAACATTAGA  950
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGCTCACCTCAAGTTCAAAGTTCTCCTGCCTCAGCTTTCTGAACATTAGA  950

seq1  ATTACATCACAAAACGGCTGGAACTGGACGGTGGCAGAGGCTGTTGTACG  1000
      ||||||||||||||||||||||||||||| |||||||||||||| |||||
seq2  ATTACATCACAAAACGGCTGGAACTGGAC-GTGGCAGAGGCTGTGGTACG  999

seq1  ACAATACTCACCGCTGCACAATTTTAAATTGAAAAATGGTTAAGATGGTA  1050
      || |||||||||||||||| ||||||||||| ||||||||  ||||||||
seq2  AC-ATACTCACCGCTGCACCATTTTAAATTG-AAAATGGT--AGATGGTA  1045

seq1  AGTTTTGGGTACACATCCTTTACCACAATTCAAAGACACAAACCGGGGTG  1100
      |||||  ||||||||| ||||| ||| ||||||  ||   ||||||| ||
seq2  AGTTT--GGTACACAT-CTTTA-CAC-ATTCAAGAAC---AACCGGGTTG  1087

seq1  ATCTCGCTGAAACATCTGTAACCCCACGGACTGTCAGAGTTGACTT-GGG  1149
      ||||||||| ||||||||  | |||||||||||||  | ||||||| |||
seq2  ATCTCGCTG-AACATCTGGTA-CCCACGGACTGTC--AATTGACTTGGGG  1133

seq1  TAATTTGGCT-GGTATGCAGGGTGT  1173
      |||||| |||  |||||||||||||
seq2  TAATTTTGCTCTGTATGCAGGGTGT  1158

seq1: chr1_172459033_172460155
seq2: B6Ng01-102M11.g_69_1017 (reverse)

seq1  GAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA  50
                                                        
seq2  --------------------------------------------------  0

seq1  GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGTGGAGGAGGAGGAGG  100
                                                        
seq2  --------------------------------------------------  0

seq1  AGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAA  150
                                                        
seq2  --------------------------------------------------  0

seq1  GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA-AGAAGAAGAAG  199
                                |||||||||||| |||   |||  
seq2  -------------------------GAGAAGAAGAAGAGAGAGAGAGAGA  25

seq1  AAGAAGA-AGAAGAAGAAAGCAAGAAGGAAGAGGAGGAGGAAGAGAAAGT  248
       |||||| ||||| ||||||| |||||| |||||||||||||||||||||
seq2  GAGAAGAGAGAAG-AGAAAGC-AGAAGGGAGAGGAGGAGGAAGAGAAAGT  73

seq1  AAAGACTGAGAGAAAGTAGAAAGACTGCTGCAAGTCTTGGGCTAGCCTAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTGAGAGAAAGTAGAAAGACTGCTGCAAGTCTTGGGCTAGCCTAG  123

seq1  GCTACACAGTGAGTTCCAGATAGACCAACCTGGGCTTCATTGTGAGACCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACACAGTGAGTTCCAGATAGACCAACCTGGGCTTCATTGTGAGACCC  173

seq1  TATCTAC-AAAATTGCTCCTATGCAAGCTAGACAGTGTCTCTGTAGATTC  397
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTACAAAAATTGCTCCTATGCAAGCTAGACAGTGTCTCTGTAGATTC  223

seq1  AATCTTTTTTCTCATTCCTGTAACTCCATCTCTTCACTGCGGTGCCCACA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTTTTCTCATTCCTGTAACTCCATCTCTTCACTGCGGTGCCCACA  273

seq1  GGCTCTCTTCTGTGTAGAGCAGCCCTTCTCGTCTGTAAACCACACTGTCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTCTTCTGTGTAGAGCAGCCCTTCTCGTCTGTAAACCACACTGTCA  323

seq1  TCAAGGCTTCACACTTCTCAAAGGCTACTTGTCCTAGCAAACAAGCCCAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCTTCACACTTCTCAAAGGCTACTTGTCCTAGCAAACAAGCCCAC  373

seq1  TGCCATCACCGAGGCATGGAAGGGCAACAAGGCTTGAAAGCAGGAGACTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATCACCGAGGCATGGAAGGGCAACAAGGCTTGAAAGCAGGAGACTG  423

seq1  AGGGAACAATGCAAACCAAATGGAGGAAGAGCTAAGGAGGGGATGTTTGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAACAATGCAAACCAAATGGAGGAAGAGCTAAGGAGGGGATGTTTGT  473

seq1  CCTTCTTTCACTTTGTGGCTTTGATAAAACACCCTGAACAAAAAGAGAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTTCACTTTGTGGCTTTGATAAAACACCCTGAACAAAAAGAGAAA  523

seq1  CTTAAGGAAATGTTCACTGCTAGAGCTGATGGTGTGAACTGAGGCCCGCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGGAAATGTTCACTGCTAGAGCTGATGGTGTGAACTGAGGCCCGCT  573

seq1  AACATCTCATCCAATACCCAACTTTATTCAGAGCATCAGACAATTAATAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTCATCCAATACCCAACTTTATTCAGAGCATCAGACAATTAATAC  623

seq1  TCTGCAGGCTAAGAAATCCCCTGCAAAAAGTCTTCAATCACAAGGACAAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGGCTAAGAAATCCCCTGCAAAAAGTCTTCAATCACAAGGACAAG  673

seq1  CCGCAGGAGGCAAAAACATGTCTCTCCATCGAGGCACATGGCTAACTACA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCAGGAGGCAAAAACATGTCTCTCCATCGAGGCACATGGCTAACTACA  723

seq1  GCTGAAGTAAACTCACTCCTATCTGCTGCGCCTGGGAGGAGCACGAAATC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGTAAACTCACTCCTATCTGCTGCGCCTGGGAGGAGCACGAAATC  773

seq1  GCATTCCAGGAACAATTCTGTGTTCTGAAAAACCTGAGGTCACCAGACTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCCAGGAACAATTCTGTGTTCTGAAAAACCTGAGGTCACCAGACTC  823

seq1  ACACCTTGTTTCCTTTGGAATTTTCTCACAAGCACTCAGAAATCTTCTCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTGTTTCCTTTGGAATTTTCTCACAAGCACTCAGAAATCTTCTCA  873

seq1  CACAACTCCACTCTTGGACCGTGTTCTGAAGGGGGAGAGAGGGTTGGTTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACTCCACTCTTGGACCGTGTTCTGAAGGGGGAGAGAGGGTTGGTTT  923

seq1  GGTTTAGGACTCTTAAGTTGGAATTC  1123
      ||||||||||||||||||||||||||
seq2  GGTTTAGGACTCTTAAGTTGGAATTC  949