BAC Information

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BAC

Clone NameB6Ng01-103E11
Chromosome1 (Build37)
Map Location 94,359,044 - 94,456,189
singlet/doubletdoublet
Overlap geneNdufa10, Olfr1416, Olfr1415, Olfr1414
Upstream geneTraf3ip1, Asb1, Twist2, Hdac4, LOC100040419, LOC665883
Downstream geneOlfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos, Gpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp, Sept2, Farp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103E11.bB6Ng01-103E11.g
ACCDH911919DH911920
length1,1591,170
definitionDH911919|Mus musculus domesticus DNA, BAC clone: B6Ng01-103E11, 5' end.DH911920|Mus musculus domesticus DNA, BAC clone: B6Ng01-103E11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,455,014 - 94,456,189)(94,359,044 - 94,360,225)
sequence
gaattcaagttgtcaccatgaactcacatctgtacacaggaactcatact
ctttgtagcctcaatgcccaatgaacatggcacttccttttagtgaccac
gattttgctaccatggctggctgcttctttatgcatctgtcatccatctt
tgaccaacccctttatatcatacattccaggcaatagtgatacagttcta
gggtgctgttactttggcaggtagggtacctgagccccaacaggagtgtt
accttccccgcagaccatatccccaggcctaatacgactgagatcaatac
cccaccgtgccccccctgtgacctggggcacagatgcacccatttacttt
agagccttccctcaaatgcactccaggtttagttccctctggaaagacag
cactcaggacttgttcttcctctttacctttcctcttactcatgtttcaa
ttcccccactcaattgttgaaccttttcttgttggcttttgtgcactcac
tatatataacagactctcacatcttacatatattgcaaatatcttttcta
gttcactgctcgtctctggccctatcactccacagtgactcctatatgac
catgtcctatagaaatgtctccatgtgaactctaatatcccttggaaatg
gaatgtctctcatggatgcacacttttttgttattctttattctttctat
ctatctatctatctatctatctatctatctatctatctttcatctcccat
cctccctttcttctcatgagaggctcagataaaggcaggcttcccatgga
tgtcagcctggcttggcatatcaagttgcaatagtattaagtacatcttc
tcctattgtggcttgatatagcagcccagttaggggaaagagccaaaggc
acgcaatagagtcggatatacctcctgttcctgctgttaggagttccaca
tgatgacaaagctgcacactgttacatatgtgcagaagcctaagtctgtc
ccatgcagtctctctgtttggtggttcagtctttgtggatctgtgtccca
ggtagttattctgtagctttttttttgtgtttctgacctctctggctcct
taaatttttcctccctctcatgaattcccaatgtttgcctgtggattctg
catcagttt
gaattcatgccactacagtgtgactgtggaaggcaaagatcactcatgtc
attttgtttttattcgtagttttacgtaccctgaagattttcagtatcaa
acaatctgttatacacaatatgccaaggaccagagagccacatggagcta
ggagagcacacttcccccatgcttcaacatatcagggatagaagacaacc
cagctggtggtgctggccctaacttcgctgaagaatgcccgcccctcaaa
ggaccatggggctgtgtattcatgcacttcctcttcagccatgctgagtg
ttttttctagatatctacctactacctgaatagaatacataggaccttta
gtgctgagatttgccatggacttgagcatagatttatttttagcatcaag
aattttaaggacctaacaggagaggaaaaattaaaaacaaaaccaaaaaa
cccaaaaagcctacccaaacaaatatacaaaacctggattgaaaaggctc
ccgttggctctgcagcgtgaggctgtgagtggagagaaagcactctgggc
tgtgtggctccagcctctgcaaggcaatctgtcttacacgggagtgctgg
gctgggctcacctcattttggggaggaaggttttcttgtacgcattctcg
atgtcctggagataggcagaggtgaccttcatttcatgtggctaaacaaa
agcagagaaaacatcccaggaggtgttcagacttattttttaaaaattgt
atgtatgtatgcgaaatgtgaccacaattggaggtacttcttctaaagag
ctaccagcttcaggggacaggcagtgagaatgattcctgactacagtgga
acctgtgccatgaccaccccatcccccttttataaagcaactgtttttgt
gttggtgagactaagacttgacttagaaaacacataggtgacagcttaaa
tttggactcacagtatttgaaacatttcaaatatgttatctagcttaaca
aaatttctctacagctttggaatatgacttgggttcctcactgacttcta
tacaatttgctgaagtatttacaaagaagataaatatttgcaagtttctc
tgtaattcattgcaagtcttgagttattcatcaacctaggagtgggcttc
tacgcagctgaggacatgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_94455014_94456189
seq2: B6Ng01-103E11.b_50_1208 (reverse)

seq1  AAACTGATGCAGAAACCCACAGGCAAACATTGGGGAATTCCATGGAAGAA  50
      |||||||||||| || ||||||||||||||| ||||||| ||||  ||| 
seq2  AAACTGATGCAG-AATCCACAGGCAAACATT-GGGAATT-CATG--AGA-  44

seq1  GGGGAGGAAAAATTTTAAGGAGCCAGAGAGGTCAAGAAAACACAAAAAAA  100
       ||||||||||| |||||||||||||||||||||  || ||| |||||||
seq2  -GGGAGGAAAAA-TTTAAGGAGCCAGAGAGGTCAGAAACACA-AAAAAAA  91

seq1  AGCTACAGAATAAACTAACCTGGGACCACAGGATCCCACAAAGACTGAAC  150
      ||||||||||| |||| |||||||| |||| ||| |||||||||||||||
seq2  AGCTACAGAAT-AACT-ACCTGGGA-CACA-GAT-CCACAAAGACTGAAC  136

seq1  CACCAAACAGAGAGACTGCATGGGACAGACTTAGGCCTTCTGCACATATG  200
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CACCAAACAGAGAGACTGCATGGGACAGACTTAGG-CTTCTGCACATATG  185

seq1  TAACAGTTGTGCAGCTTTGTCATCATGTGGAACTCCTAACAGCAGGAACA  250
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAG-TGTGCAGCTTTGTCATCATGTGGAACTCCTAACAGCAGGAACA  234

seq1  GGAGGTATATCCGACTCTATTGCGTGCCTTTGGCTCTTTCCCCCTAACTG  300
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GGAGGTATATCCGACTCTATTGCGTGCCTTTGGCTCTTT-CCCCTAACTG  283

seq1  GGCTGCTATATCAAGCCACAATAGGAGAAGATGTACTTAATACTATTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTATATCAAGCCACAATAGGAGAAGATGTACTTAATACTATTGCA  333

seq1  ACTTGATATGCCAAGCCAGGCTGACATCCATGGGAAGCCTGCCTTTATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGATATGCCAAGCCAGGCTGACATCCATGGGAAGCCTGCCTTTATCT  383

seq1  GAGCCTCTCCTGAGAAGAAAGGGAGGATGGGAGATGAAAGATAGATAGAT  450
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTCTCATGAGAAGAAAGGGAGGATGGGAGATGAAAGATAGATAGAT  433

seq1  AGATAGATAGATAGATAGATAGATAGATAGAAAGAATAAAGAATAACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGATAGATAGATAGATAGATAGATAGAAAGAATAAAGAATAACAAA  483

seq1  AAAGTGTGCATCCATGAGAGACATTCCATTTCCAAGGGATATTAGAGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTGCATCCATGAGAGACATTCCATTTCCAAGGGATATTAGAGTTC  533

seq1  ACATGGAGACATTTCTATAGGACATGGTCATATAGGAGTCACTGTGGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGAGACATTTCTATAGGACATGGTCATATAGGAGTCACTGTGGAGT  583

seq1  GATAGGGCCAGAGACGAGCAGTGAACTAGAAAAGATATTTGCAATATATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGGCCAGAGACGAGCAGTGAACTAGAAAAGATATTTGCAATATATG  633

seq1  TAAGATGTGAGAGTCTGTTATATATAGTGAGTGCACAAAAGCCAACAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGTGAGAGTCTGTTATATATAGTGAGTGCACAAAAGCCAACAAGA  683

seq1  AAAGGTTCAACAATTGAGTGGGGGAATTGAAACATGAGTAAGAGGAAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTCAACAATTGAGTGGGGGAATTGAAACATGAGTAAGAGGAAAGG  733

seq1  TAAAGAGGAAGAACAAGTCCTGAGTGCTGTCTTTCCAGAGGGAACTAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGGAAGAACAAGTCCTGAGTGCTGTCTTTCCAGAGGGAACTAAAC  783

seq1  CTGGAGTGCATTTGAGGGAAGGCTCTAAAGTAAATGGGTGCATCTGTGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTGCATTTGAGGGAAGGCTCTAAAGTAAATGGGTGCATCTGTGCC  833

seq1  CCAGGTCACAGGGGGGGCACGGTGGGGTATTGATCTCAGTCGTATTAGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTCACAGGGGGGGCACGGTGGGGTATTGATCTCAGTCGTATTAGGC  883

seq1  CTGGGGATATGGTCTGCGGGGAAGGTAACACTCCTGTTGGGGCTCAGGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGATATGGTCTGCGGGGAAGGTAACACTCCTGTTGGGGCTCAGGTA  933

seq1  CCCTACCTGCCAAAGTAACAGCACCCTAGAACTGTATCACTATTGCCTGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACCTGCCAAAGTAACAGCACCCTAGAACTGTATCACTATTGCCTGG  983

seq1  AATGTATGATATAAAGGGGTTGGTCAAAGATGGATGACAGATGCATAAAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATGATATAAAGGGGTTGGTCAAAGATGGATGACAGATGCATAAAG  1033

seq1  AAGCAGCCAGCCATGGTAGCAAAATCGTGGTCACTAAAAGGAAGTGCCAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCCAGCCATGGTAGCAAAATCGTGGTCACTAAAAGGAAGTGCCAT  1083

seq1  GTTCATTGGGCATTGAGGCTACAAAGAGTATGAGTTCCTGTGTACAGATG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTGGGCATTGAGGCTACAAAGAGTATGAGTTCCTGTGTACAGATG  1133

seq1  TGAGTTCATGGTGACAACTTGAATTC  1176
      ||||||||||||||||||||||||||
seq2  TGAGTTCATGGTGACAACTTGAATTC  1159

seq1: chr1_94359044_94360225
seq2: B6Ng01-103E11.g_66_1235

seq1  GAATTCATGCCACTACAGTGTGACTGTGGAAGGCAAAGATCACTCATGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCCACTACAGTGTGACTGTGGAAGGCAAAGATCACTCATGTC  50

seq1  ATTTTGTTTTTATTCGTAGTTTTACGTACCCTGAAGATTTTCAGTATCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTTTTATTCGTAGTTTTACGTACCCTGAAGATTTTCAGTATCAA  100

seq1  ACAATCTGTTATACACAATATGCCAAGGACCAGAGAGCCACATGGAGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCTGTTATACACAATATGCCAAGGACCAGAGAGCCACATGGAGCTA  150

seq1  GGAGAGCACACTTCCCCCATGCTTCAACATATCAGGGATAGAAGACAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGCACACTTCCCCCATGCTTCAACATATCAGGGATAGAAGACAACC  200

seq1  CAGCTGGTGGTGCTGGCCCTAACTTCGCTGAAGAATGCCCGCCCCTCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGTGGTGCTGGCCCTAACTTCGCTGAAGAATGCCCGCCCCTCAAA  250

seq1  GGACCATGGGGCTGTGTATTCATGCACTTCCTCTTCAGCCATGCTGAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCATGGGGCTGTGTATTCATGCACTTCCTCTTCAGCCATGCTGAGTG  300

seq1  TTTTTTCTAGATATCTACCTACTACCTGAATAGAATACATAGGACCTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTAGATATCTACCTACTACCTGAATAGAATACATAGGACCTTTA  350

seq1  GTGCTGAGATTTGCCATGGACTTGAGCATAGATTTATTTTTAGCATCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGAGATTTGCCATGGACTTGAGCATAGATTTATTTTTAGCATCAAG  400

seq1  AATTTTAAGGACCTAACAGGAGAGGAAAAATTAAAAACAAAACCAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAAGGACCTAACAGGAGAGGAAAAATTAAAAACAAAACCAAAAAA  450

seq1  CCCAAAAAGCCTACCCAAACAAATATACAAAACCTGGATTGAAAAGGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAAAGCCTACCCAAACAAATATACAAAACCTGGATTGAAAAGGCTC  500

seq1  CCGTTGGCTCTGCAGCGTGAGGCTGTGAGTGGAGAGAAAGCACTCTGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTGGCTCTGCAGCGTGAGGCTGTGAGTGGAGAGAAAGCACTCTGGGC  550

seq1  TGTGTGGCTCCAGCCTCTGCAAGGCAATCTGTCTTACACGGGAGTGCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGCTCCAGCCTCTGCAAGGCAATCTGTCTTACACGGGAGTGCTGG  600

seq1  GCTGGGCTCACCTCATTTTGGGGAGGAAGGTTTTCTTGTACGCATTCTCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGCTCACCTCATTTTGGGGAGGAAGGTTTTCTTGTACGCATTCTCG  650

seq1  ATGTCCTGGAGATAGGCAGAGGTGACCTTCATTTCATGTGGCTAAACAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTGGAGATAGGCAGAGGTGACCTTCATTTCATGTGGCTAAACAAA  700

seq1  AGCAGAGAAAACATCCCAGGAGGTGTTCAGACTTATTTTTTAAAAATTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGAAAACATCCCAGGAGGTGTTCAGACTTATTTTTTAAAAATTGT  750

seq1  ATGTATGTATGCGAAATGTGACCACAATTGGAGGTACTTCTTCTAAAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTATGCGAAATGTGACCACAATTGGAGGTACTTCTTCTAAAGAG  800

seq1  CTACCAGCTTCAGGGGACAGGCAGTGAGAATGATTCCTGACTACAGTGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAGCTTCAGGGGACAGGCAGTGAGAATGATTCCTGACTACAGTGGA  850

seq1  ACCTGTGCCATGACCACCCCATCCCCCTTTTATAAAGCAACTGTTTTTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGCCATGACCACCCCATCCCCCTTTTATAAAGCAACTGTTTTTGT  900

seq1  GTTGGTGAGACTAAGACTTGACTTAGAAAACACATAGGTGACAGCTTAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTGAGACTAAGACTTGACTTAGAAAACACATAGGTGACAGCTTAAA  950

seq1  TTTGGACTCACAAGTATTTGAAACATTTCAAATATGTTATCTAGCTTAAC  1000
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTTGGACTCAC-AGTATTTGAAACATTTCAAATATGTTATCTAGCTTAAC  999

seq1  AAAATTTCTTCCTACAGCTATGGAATATGACTTGGGTTTCTCACTGACTT  1050
      |||||||||  |||||||| |||||||||||||||||| |||||||||||
seq2  AAAATTTCT--CTACAGCTTTGGAATATGACTTGGGTTCCTCACTGACTT  1047

seq1  CTATAAACAATTTTGCTGAAAGTTATTTTACAAAGGAGATTAAATATTTG  1100
      ||||  |||| ||||||| ||||   ||||||||| ||| ||||||||||
seq2  CTAT--ACAA-TTTGCTG-AAGT--ATTTACAAAGAAGA-TAAATATTTG  1090

seq1  CAGTTCCCTCTGTAATTCCATGGCAAGTCCTGAGTTATTCATCAACTTA-  1149
      ||  |  |||||||||| ||| ||||||| |||||||||||||||| || 
seq2  CAAGTTTCTCTGTAATT-CATTGCAAGTCTTGAGTTATTCATCAACCTAG  1139

seq1  GAGTGAGCTCTTACGCAGCCTGAGGGACATGCA  1182
      ||||| |||  ||||||| |||| |||||||||
seq2  GAGTGGGCTTCTACGCAG-CTGA-GGACATGCA  1170