BAC Information

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BAC

Clone NameB6Ng01-104A10
Chromosome1 (Build37)
Map Location 187,740,142 - 187,881,871
singlet/doubletdoublet
Overlap genenone
Upstream geneMark1, Iars2, Bpnt1, Eprs, 9630028B13Rik, LOC100039138, Slc30a10, 5033404E19Rik, LOC677785
Downstream geneLyplal1, Tgfb2, Rrp15, LOC666832, LOC100042375, D1Pas1, Spata17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104A10.bB6Ng01-104A10.g
ACCDH912443DH912444
length1,1521,149
definitionDH912443|Mus musculus domesticus DNA, BAC clone: B6Ng01-104A10, 5' end.DH912444|Mus musculus domesticus DNA, BAC clone: B6Ng01-104A10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(187,740,142 - 187,741,294)(187,880,711 - 187,881,871)
sequence
gaattcacctccggtcctgtagcggaagttcacacagtgacgtctaactg
tgacccagtcctcttttcttccttggagcatccaaagatgtctcggtagg
gatgtgcttaaaacatggctatcagtttaatagaggacgatgaagcagta
gaatgaggggaggaaatgaccactcatccgcacatctttctttggcaaga
gtctagcatttttctagttgacagtttttcctgattggttaatgaagctc
tgtgctgggtgacctggtgtaaacagaccccagaagagtttgctgaggtg
ggggatgtgaaaggcatgagagttggcgccatccttgttctactgtgagc
agacggtcctcctccttcctgttggatcacccatctgttggtgaaaacca
tgccctagagccgtgtcttccctttagtctcatttgcctgatctttcaat
ttcctcttgcctttctcctgtctacttcatttgcagactcccaattagtt
tgatgcttcaacctagctttgatttatgagctccctctcctccttccttc
cctccctctccctataccctccccctcccccttctctctgtctctcttcc
ctctctctccataatttcccataatgacaggggattgcttgtttaattct
tagtcacaatctaaaagacagctatccagtgtatccaaccaaaaccaaac
catattgttaccttggttttgggctttgagcctctggagatgcaagataa
tacatttctatgtaagcacagtatttgtggtcctttggtatggcagccaa
gctgaatgagacattatcatcacttatgatctctgaccataatacctgct
atgactcagttctgagccctgagccccttccaacccacagagattgtatt
ttctagttcacgtggaccagcagatttcatccatctctctctctttcgtt
ctcctgacttctctgatttatttatttatttacatttcaaatactgcccc
acccccaccccctgtaccagtatggtggcatcttggtgcatcagtccctg
caggtcagtacacctcttcccactgagccactatagttgtcagggacctc
agaccagaaccatgtatgcttctttggtcggggcttcgtctctgggaacc
tc
gaattccaagttgcaattccagtgtttcccatcgggttcttcaccactga
tgattgttggccacggaagtatagaatgaagagaaggataatattttcac
acaccagcatggaggctttcaccgagcgttgccattatctcaaacaaagg
gagtctaaaactctcagtcctctgttgtgaacatgtctgcctttaattct
ctttctgtgactttatcctctttcctcttcattatctgtaacatgaagtc
attttggtctctctcctttgtcccacttctactttataattcattcaatc
ggtctattaatttcaactctgtagacttccttttgtaaatacctatggaa
aacttaaatgtaaacactcatttttctttaagctggtgtggtggctcaca
caggaggcagaggcagaggcagaaggaatcataaatttgagaaaagttgg
attatggagtaagacccacctttaagataccccagattacaaatattagt
ttaaaagcctaatatattctgtgctgtgaatttagcataatgtataaatg
tataaatctatgatcactttaatagcttaaattttaagaaaagcatcaga
tagaaatctatacattgttaattatatctagtaatctctttttagttttt
ttaaaatgtatttgttaatttttttaatcatccagactttatcttcctcc
cagtccagcctccaactgttccacatcccacacctccttcccccacccct
gtctccaagagaatgtccccacctccaccctactccaccatacctcccta
atccctgggtccccaagtctctcaagggttgggtgcattttctctgacta
aatccagacagggcatcaagtggagggatggtgttgccatcccataatca
aacctctgacccagaattattctgggatgaaagaagtgcaggaacaaaaa
tggagagagctgaggaaaagagtccagtacaggtctaattggatccatct
caggaggaggctcaaggcagatactattacggatgctatctaaggctcaa
caggcagttgaacgagtcgaatggtgatattacaccaaaccaatgcacag
aagcctgctgaccctgtgctgatacgaaaaactggaaggtaagagaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_187740142_187741294
seq2: B6Ng01-104A10.b_46_1197

seq1  GAATTCACCTCCGGTCCTGTAGCGGAAGTTCACACAGTGACGTCTAACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTCCGGTCCTGTAGCGGAAGTTCACACAGTGACGTCTAACTG  50

seq1  TGACCCAGTCCTCTTTTCTTCCTTGGAGCATCCAAAGATGTCTCGGTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCAGTCCTCTTTTCTTCCTTGGAGCATCCAAAGATGTCTCGGTAGG  100

seq1  GATGTGCTTAAAACATGGCTATCAGTTTAATAGAGGACGATGAAGCAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGCTTAAAACATGGCTATCAGTTTAATAGAGGACGATGAAGCAGTA  150

seq1  GAATGAGGGGAGGAAATGACCACTCATCCGCACATCTTTCTTTGGCAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAGGGGAGGAAATGACCACTCATCCGCACATCTTTCTTTGGCAAGA  200

seq1  GTCTAGCATTTTTCTAGTTGACAGTTTTTCCTGATTGGTTAATGAAGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGCATTTTTCTAGTTGACAGTTTTTCCTGATTGGTTAATGAAGCTC  250

seq1  TGTGCTGGGTGACCTGGTGTAAACAGACCCCAGAAGAGTTTGCTGAGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGGGTGACCTGGTGTAAACAGACCCCAGAAGAGTTTGCTGAGGTG  300

seq1  GGGGATGTGAAAGGCATGAGAGTTGGCGCCATCCTTGTTCTACTGTGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATGTGAAAGGCATGAGAGTTGGCGCCATCCTTGTTCTACTGTGAGC  350

seq1  AGACGGTCCTCCTCCTTCCTGTTGGATCACCCATCTGTTGGTGAAAACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGGTCCTCCTCCTTCCTGTTGGATCACCCATCTGTTGGTGAAAACCA  400

seq1  TGCCCTAGAGCCGTGTCTTCCCTTTAGTCTCATTTGCCTGATCTTTCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTAGAGCCGTGTCTTCCCTTTAGTCTCATTTGCCTGATCTTTCAAT  450

seq1  TTCCTCTTGCCTTTCTCCTGTCTACTTCATTTGCAGACTCCCAATTAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTTGCCTTTCTCCTGTCTACTTCATTTGCAGACTCCCAATTAGTT  500

seq1  TGATGCTTCAACCTAGCTTTGATTTATGAGCTCCCTCTCCTCCTTCCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTTCAACCTAGCTTTGATTTATGAGCTCCCTCTCCTCCTTCCTTC  550

seq1  CCTCCCTCTCCCTATGCCCTCCCCCTCCCCCTTCTCTCTGTCTCTCTTCC  600
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCTCCCTCTCCCTATACCCTCCCCCTCCCCCTTCTCTCTGTCTCTCTTCC  600

seq1  CTCTCTCTCCATAATTTCCCATAATGACAGGGGATTGCTTGTTTAATTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCCATAATTTCCCATAATGACAGGGGATTGCTTGTTTAATTCT  650

seq1  TAGTCACAATCTAAAAGACAGCTATCCAGTGTATCCAACCAAAACCAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCACAATCTAAAAGACAGCTATCCAGTGTATCCAACCAAAACCAAAC  700

seq1  CATATTGTTACCTTGGTTTTGGGCTTTGAGCCTCTGGAGATGCAAGATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTGTTACCTTGGTTTTGGGCTTTGAGCCTCTGGAGATGCAAGATAA  750

seq1  TACATTTCTATGTAAGCACAGTATTTGTGGTCCTTTGGTATGGCAGCCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTCTATGTAAGCACAGTATTTGTGGTCCTTTGGTATGGCAGCCAA  800

seq1  GCTGAATGAGACATTATCATCACTTATGATCTCTGACCATAATACCTGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAATGAGACATTATCATCACTTATGATCTCTGACCATAATACCTGCT  850

seq1  ATGACTCAGTTCTGAGCCCTGAGCCCCTTCCAACCCACAGAGATTGTA-T  899
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATGACTCAGTTCTGAGCCCTGAGCCCCTTCCAACCCACAGAGATTGTATT  900

seq1  TTCTAGTTCACGTGGACCAGCAGATTTCAATCCATCTCTCTCTCTTTCGT  949
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTCTAGTTCACGTGGACCAGCAGATTTC-ATCCATCTCTCTCTCTTTCGT  949

seq1  TCTCCTGACTTCTCTGATTTATTTATTTATTTACATTTCAAATACTGCCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGACTTCTCTGATTTATTTATTTATTTACATTTCAAATACTGCCC  999

seq1  CACCCCCACCCCCTGTACCAGTATGGTGGCATCTTGGTGCATCAAGTCCC  1049
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CACCCCCACCCCCTGTACCAGTATGGTGGCATCTTGGTGCATC-AGTCCC  1048

seq1  TGCAGGATCAGGTACAACCTC-TCCCACTGAGGCGACATATGTGTCAGGG  1098
      |||||| ||| |||| ||||| |||||||||| |   |||  ||||||||
seq2  TGCAGG-TCA-GTAC-ACCTCTTCCCACTGAGCCACTATAGTTGTCAGGG  1095

seq1  ACCTCAGACCAG-ACCATGTATGC-TCTTTGGTCGGTGGCTCAGTCTCTG  1146
      |||||||||||| ||||||||||| ||||||||||| ||||  |||||||
seq2  ACCTCAGACCAGAACCATGTATGCTTCTTTGGTCGG-GGCTTCGTCTCTG  1144

seq1  GG-ACCTC  1153
      || |||||
seq2  GGAACCTC  1152

seq1: chr1_187880711_187881871
seq2: B6Ng01-104A10.g_74_1216 (reverse)

seq1  GCCTCCTCTTCACCTTCCAGATTTTTCCTAATTCAGCCACAGGGGTCAGC  50
      |||| ||||| ||||||||| |||||| ||  |||| |||| ||||||||
seq2  GCCT-CTCTT-ACCTTCCAG-TTTTTCGTA--TCAG-CACA-GGGTCAGC  43

seq1  A-GCTTCTGTGCATTGGTTGGGTGTAAATATCAGCATCTGACTCGTTCAA  99
      | ||||||||||||||||| ||||| ||||||| |||  |||||||||||
seq2  AGGCTTCTGTGCATTGGTTTGGTGT-AATATCACCATTCGACTCGTTCAA  92

seq1  CTGCTTGTTGAGCCTTTAGATAGCATCCGTAATAGTATCTGGCCTTGGAG  149
      |||| ||||||||| ||||||||||||||||||||||||| ||||| |||
seq2  CTGCCTGTTGAGCC-TTAGATAGCATCCGTAATAGTATCT-GCCTT-GAG  139

seq1  CCTCCTCCTGAGATGGATCCCAATTTGGACCTGTTACTGGACCTCCTTTT  199
      ||||||||||||||||||||  | || |||||| ||||||||   |||||
seq2  CCTCCTCCTGAGATGGATCC--AATTAGACCTG-TACTGGAC--TCTTTT  184

seq1  CCTCAGGCTCTTCTCCATTTTTGTTCCTGCACTTCTTTCATCCCAGAATA  249
      ||||| |||| |||||||||||||||||||||||||||||||||||||||
seq2  CCTCA-GCTC-TCTCCATTTTTGTTCCTGCACTTCTTTCATCCCAGAATA  232

seq1  ATTCTGGGTCAGAGGTTTTGATTATGGGATGGCAACACCATCCCTCCACT  299
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATTCTGGGTCAGAGG-TTTGATTATGGGATGGCAACACCATCCCTCCACT  281

seq1  TGATGCCCTGTCTGGATTTAGTCAGAGAAAATGCACCCAACCCTTGAGAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCCCTGTCTGGATTTAGTCAGAGAAAATGCACCCAACCCTTGAGAG  331

seq1  ACTTGGGGACCCAGGGATTAGGGAGGTATGGTGGAGTAGGGTGGAGGTGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGGACCCAGGGATTAGGGAGGTATGGTGGAGTAGGGTGGAGGTGG  381

seq1  GGACATTCTCTTGGAGACAGGGGTGGGGGAAGGAGGTGTGGGATGTGGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATTCTCTTGGAGACAGGGGTGGGGGAAGGAGGTGTGGGATGTGGAA  431

seq1  CAGTTGGAGGCTGGACTGGGAGGAAGATAAAGTCTGGATGATTAAAAAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGGAGGCTGGACTGGGAGGAAGATAAAGTCTGGATGATTAAAAAAA  481

seq1  TTAACAAATACATTTTAAAAAAACTAAAAAGAGATTACTAGATATAATTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAATACATTTTAAAAAAACTAAAAAGAGATTACTAGATATAATTA  531

seq1  ACAATGTATAGATTTCTATCTGATGCTTTTCTTAAAATTTAAGCTATTAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTATAGATTTCTATCTGATGCTTTTCTTAAAATTTAAGCTATTAA  581

seq1  AGTGATCATAGATTTATACATTTATACATTATGCTAAATTCACAGCACAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATCATAGATTTATACATTTATACATTATGCTAAATTCACAGCACAG  631

seq1  AATATATTAGGCTTTTAAACTAATATTTGTAATCTGGGGTATCTTAAAGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTAGGCTTTTAAACTAATATTTGTAATCTGGGGTATCTTAAAGG  681

seq1  TGGGTCTTACTCCATAATCCAACTTTTCTCAAATTTATGATTCCTTCTGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTTACTCCATAATCCAACTTTTCTCAAATTTATGATTCCTTCTGC  731

seq1  CTCTGCCTCTGCCTCCTGTGTGAGCCACCACACCAGCTTAAAGAAAAATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCTGCCTCCTGTGTGAGCCACCACACCAGCTTAAAGAAAAATG  781

seq1  AGTGTTTACATTTAAGTTTTCCATAGGTATTTACAAAAGGAAGTCTACAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTACATTTAAGTTTTCCATAGGTATTTACAAAAGGAAGTCTACAG  831

seq1  AGTTGAAATTAATAGACCGATTGAATGAATTATAAAGTAGAAGTGGGACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAAATTAATAGACCGATTGAATGAATTATAAAGTAGAAGTGGGACA  881

seq1  AAGGAGAGAGACCAAAATGACTTCATGTTACAGATAATGAAGAGGAAAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAGAGACCAAAATGACTTCATGTTACAGATAATGAAGAGGAAAGA  931

seq1  GGATAAAGTCACAGAAAGAGAATTAAAGGCAGACATGTTCACAACAGAGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAAGTCACAGAAAGAGAATTAAAGGCAGACATGTTCACAACAGAGG  981

seq1  ACTGAGAGTTTTAGACTCCCTTTGTTTGAGATAATGGCAACGCTCGGTGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGAGTTTTAGACTCCCTTTGTTTGAGATAATGGCAACGCTCGGTGA  1031

seq1  AAGCCTCCATGCTGGTGTGTGAAAATATTATCCTTCTCTTCATTCTATAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTCCATGCTGGTGTGTGAAAATATTATCCTTCTCTTCATTCTATAC  1081

seq1  TTCCGTGGCCAACAATCATCAGTGGTGAAGAACCCGATGGGAAACACTGG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGTGGCCAACAATCATCAGTGGTGAAGAACCCGATGGGAAACACTGG  1131

seq1  AATTGCTACTTG  1161
      |||||| |||||
seq2  AATTGCAACTTG  1143