BAC Information

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BAC

Clone NameB6Ng01-104B22
Chromosome1 (Build37)
Map Location 195,461,581 - 195,462,752
singlet/doubletsinglet
Overlap genenone
Upstream geneHhat, A730013G03Rik, Sertad4, LOC100039677, Syt14, AA408296, Irf6, A130010J15Rik, Traf3ip3, Hsd11b1, G0s2, Lamb3, Camk1g
Downstream geneLOC667208, EG623172, Plxna2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104B22.bB6Ng01-104B22.g
ACCDH912512DH912513
length1,2141,135
definitionDH912512|Mus musculus domesticus DNA, BAC clone: B6Ng01-104B22, 5' end.DH912513|Mus musculus domesticus DNA, BAC clone: B6Ng01-104B22, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctatcagaccttcaaagaagacctaataccaatactcttcaaact
attccacaaaatagtaacagaaggaacactacccagttcgttctatgaag
ccacaattacactgataccaaaaccacacaaagacccaacaaagaaaaac
gaactttaggccaatttcccttatgaatatcaatgcaaaaatattaaata
aaattctcgcaaacaaaatccaagtatacatcaaaacgatcattcactac
aatcaagtaggcttcattcctgggaggcaggggtggttcaatatatagaa
atccatcaacataatacactacataaataataaatgacaaaattcgacat
cccttcatgttaaaactcttgggaagatcaggaattcaaggcctatacat
aaacatagtaaaaagcaatagccaacatcaaactaaatggagagaaacta
aatctcactaaaatcagggactagacaaggctgctatctatctatctatc
tatctatctatctatctatctatctatctatctattcaatatagtacgtg
aagttctagatagaataattagacaacaaaaggagatcaaaggaatacaa
attggaaaggaagaagtcaaaatatcactatttgcaggtgatatgataat
ataatgaagtaaccccaaaaatcccaccagagaactcctaaatctgataa
acaacttcagcaaagtggctggatataaaaattaccttaaacaaatcagt
agccttcctatactcaaagaataaaggacccgagaaagaaattagggaat
caacacccttcacaatcgtcacaaacaatataagatatcttggtatgatt
ctagtcaaagaagtgaaagatctgtacaagaacttcaagtctctgaagaa
gaaatcaaagaagacctcagaagaagaagatcctcccatgctcatggatt
ggcaggatttatatagtaaaatggccatcttgtcgaaagcaatctacaga
ttcatgcaatcaccatcaaatccactcatcttcatagagttaaagcattt
gcaaatctatttggataagaaaaccaacaaacccaggatagcaaaactat
tctcacattaaaggacccttctgggtatcagcattcctgactcaagctgt
actacagacatggtaacctgcatgccatggtaagtgaagcagtagaattc
aatgtgaaatgaat
gaattcatcctggagctcaaatattcccagaaccattgtatggaatctct
aaaacaggcatgaacacacacattcagagcactgattctgatcttaatgg
atggtaatctagccttagaggcacctgtctacttatccttgcagggcctg
ccctcccttgtttgtcaggcccacctcaataccatttctatctatctatc
tatctatctatctatctatctatctatctatctatctatctatctatcta
tctatctagactatggtggtctattaactagccttttagtctacactggt
cctgcactggaggtggtagaattcttgtatcataccaaggccagtgtcag
ctccccattctgaacttggagctggatcatagacagaatgaatatgtacc
tggggaaggactcagtaagtagacagtgaggagtagttcactccccctga
ccccccaatgctacctgggtagaagcattgtggggagagggttactcctc
actgtatatgctggctacatactctgggggaactttatgactctgaagaa
aactgcagctctttggtggctgtccttgttgacatcttcattttttcaaa
gatgagaaaaataaatcactttcctaggatactttaaatgtcacattgcc
tgaagcaagggcaatggatagatgacttctcaaggtcttctccaacctaa
agatttttatagccactcatcctggaaatgtcctcccagcttgtgagacc
tccaggactttgcttcttgccaagtgttatggggtgtacggatgttcctc
attgtgaatcacgacacctctcagataacagaagcttctgtcaccaatat
aagcaaatccaagttctttcagatgtctaggtggtttcaggcacttccaa
atcgacaggttctgtactggttacaacttgtgtgttgttccctgggagaa
tgaggtacttcatgctgccacagagcatcaattctggtggtggtgtctgc
tctctttgtgccagtataacttgaaagcattcatgagctatccttagcac
tggtgacttaatgcattacttaaaccttaagtcgtgaaggtcttcctgta
agttggacagtacatcgtccctggagaggggtgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_195461581_195462752
seq2: B6Ng01-104B22.g_68_1202

seq1  GAATTCATCCTGGAGCTCAAATATTCCCAGAACCATTGTATGGAATCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCTGGAGCTCAAATATTCCCAGAACCATTGTATGGAATCTCT  50

seq1  AAAACAGGCATGAACACACACATTCAGAGCACTGATTCTGATCTTAATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGGCATGAACACACACATTCAGAGCACTGATTCTGATCTTAATGG  100

seq1  ATGGTAATCTAGCCTTAGAGGCACCTGTCTACTTATCCTTGCAGGGCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAATCTAGCCTTAGAGGCACCTGTCTACTTATCCTTGCAGGGCCTG  150

seq1  CCCTCCCTTGTTTGTCAGGCCCACCTCAATACCATTTCTATCTATCTATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCTTGTTTGTCAGGCCCACCTCAATACCATTTCTATCTATCTATC  200

seq1  TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA  250

seq1  TCTATCTAGACTATGGTGGTCTATTAACTAGCCTTTTAGTCTACACTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTAGACTATGGTGGTCTATTAACTAGCCTTTTAGTCTACACTGGT  300

seq1  CCTGCACTGGAGGTGGTAGAATTCTTGTATCATACCAAGGCCAGTGTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCACTGGAGGTGGTAGAATTCTTGTATCATACCAAGGCCAGTGTCAG  350

seq1  CTCCCCATTCTGAACTTGGAGCTGGATCATAGACAGAATGAATATGTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCATTCTGAACTTGGAGCTGGATCATAGACAGAATGAATATGTACC  400

seq1  TGGGGAAGGACTCAGTAAGTAGACAGTGAGGAGTAGTTCACTCCCCCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAAGGACTCAGTAAGTAGACAGTGAGGAGTAGTTCACTCCCCCTGA  450

seq1  CCCCCCAATGCTACCTGGGTAGAAGCATTGTGGGGAGAGGGTTACTCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCAATGCTACCTGGGTAGAAGCATTGTGGGGAGAGGGTTACTCCTC  500

seq1  ACTGTATATGCTGGCTACATACTCTGGGGGAACTTTATGACTCTGAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATATGCTGGCTACATACTCTGGGGGAACTTTATGACTCTGAAGAA  550

seq1  AACTGCAGCTCTTTGGTGGCTGTCCTTGTTGACATCTTCATTTTTTCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCAGCTCTTTGGTGGCTGTCCTTGTTGACATCTTCATTTTTTCAAA  600

seq1  GATGAGAAAAATAAATCACTTTCCTAGGATACTTTAAATGTCACATTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGAAAAATAAATCACTTTCCTAGGATACTTTAAATGTCACATTGCC  650

seq1  TGAAGCAAGGGCAATGGATAGATGACTTCTCAAGGTCTTCTCCAACCTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCAAGGGCAATGGATAGATGACTTCTCAAGGTCTTCTCCAACCTAA  700

seq1  AGATTTTTATAGCCACTCATCCTGGAAATGTCCTCCCAGCTTGTGAGACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTTATAGCCACTCATCCTGGAAATGTCCTCCCAGCTTGTGAGACC  750

seq1  TCCAGGACTTTGCTTCTTGCCAAGTGTTATGGGGTGTACGGATGTTCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGACTTTGCTTCTTGCCAAGTGTTATGGGGTGTACGGATGTTCCTC  800

seq1  ATTGTGAATCACGACACCTCTCAGATAACAGAAGCTTCTGTCACCAATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGAATCACGACACCTCTCAGATAACAGAAGCTTCTGTCACCAATAT  850

seq1  AAGCAAATCCCAAGTTCTTCCAGATGTCTAGGTGGTTTCCAGGCACCTCC  900
      |||||||| |||||||||| |||||||||||||||||| ||||||| |||
seq2  AAGCAAAT-CCAAGTTCTTTCAGATGTCTAGGTGGTTT-CAGGCACTTCC  898

seq1  AAATCGACAGGTTCTGTACTGGTTACAACTTTGTGTGTTTTGTTCCCTGG  950
      ||||||||||||||||||||||||||||||   ||||| |||||||||||
seq2  AAATCGACAGGTTCTGTACTGGTTACAACT---TGTGTGTTGTTCCCTGG  945

seq1  GAGAAATGAGGTACTTCATGCTGGCCCACAGAGCATCAAATACTGGTGGT  1000
      ||| |||||||||||||||||||  |||||||||||| ||| ||||||||
seq2  GAG-AATGAGGTACTTCATGCTG--CCACAGAGCATC-AATTCTGGTGGT  991

seq1  GGGTGTCTGCTCCTCTTTGGTGCACAAGGTATAAACTTGAAAGCCATCAT  1050
       |||||||||| |||||| |||| ||  |||| |||||||||||  ||||
seq2  -GGTGTCTGCT-CTCTTT-GTGC-CA--GTAT-AACTTGAAAGCATTCAT  1034

seq1  GAGCTATCCGCTTAGCAACTGGGTGACTTTATATGCATTACTTAAACCCC  1100
      ||||||||  |||||| ||| ||||||||   ||||||||||||||||  
seq2  GAGCTATC--CTTAGC-ACT-GGTGACTT--AATGCATTACTTAAACC--  1076

seq1  TTAAAGTCTGTTGAAAGTTTCTTCCCCTGTAAAGTTTTGGTAACAGTACA  1150
       | |||||   |||| |  ||||  |||||||    ||||  ||||||||
seq2  -TTAAGTC--GTGAAGG--TCTT--CCTGTAA---GTTGG--ACAGTACA  1114

seq1  TCTGTCCTGGAGGTGGGGTGAT  1172
      ||   |||||| | ||||||||
seq2  TCGTCCCTGGA-GAGGGGTGAT  1135