BAC Information

Click to search

BAC

Clone NameB6Ng01-104F10
Chromosome1 (Build37)
Map Location 69,994,387 - 69,995,549
singlet/doubletsinglet
Overlap geneSpag16
Upstream geneErbb4, LOC667842, EG241084, Ikzf2
Downstream geneA830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104F10.bB6Ng01-104F10.g
ACCDH912668DH912669
length1,149462
definitionDH912668|Mus musculus domesticus DNA, BAC clone: B6Ng01-104F10, 5' end.DH912669|Mus musculus domesticus DNA, BAC clone: B6Ng01-104F10, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctatggcacatcccagtcagagaaacagaagttaaatgaaccggg
atagagaaataaaagcaaaagactgaaacaaagaacgagggtgtgttctg
cattttgtcagcagtcaactatcttatttttaacaccaaatgtcttctgt
ttccttctaagatgatatggatccccctgcaaacagaaaatcacctctat
aactgtagattcatcttccttctctgcttaaactctgcccatagaaccag
ttctatgtctctgaccaccattttgatgattccatcttgctgccacataa
gagaagagacaggggctggaaagatggctcagccattaaaggttagggtc
acaaccaaaaatgtaagagaggaaagagatgaggctttagtgccacactg
cctacctggacacagaggctaccttggcacagaggcacttatgcatggca
cacaggggccttttctgccctctgaaccctcaaggtcagatcataaaggc
agacggccactagccagctacaaggatctcctcctccaaaagttttcatg
gtactcagtaatgtttctctcaccataatacactatttcattaatgttca
gaatcatgaaagcagaattaactgattaccctagaaaagctaaagattca
tgttttgcacgtgaatatacccaagacaagtgctgaacactcagcatggt
aatttcacattacagcatactaaaatactgtctctcctgatgagtagttt
cagagtcaactatgatttcaaatcccagttctctctcttggtagatcatc
cacttaaaaatcacttatcattaggaggcagacaacgtgagaggcaggag
atagagctttgagtcagaagtgacagtggttctactctcacagaaactgc
agggggaaaagagactttcattgaaaaaaaaaagatgaaagcaatgagaa
gtcaagaaacaagggtctaggtttgagatatagagaggaacaaagagcct
cctgagatatgtcaacagcgaagggaaagttcctgaagaatgagctgtgc
tggcatctgagacacacagaaggagcgattctaaaatcatcaatccatat
tgcttgcacaaagaaaacctcaattctgacattttgtatgcatgtttct

aaattgaatcaccaagtcataacaaaagatttaaaattagggaaccaaga
acgaactttaagaagtcatcaacagcagatactcacacccaaccttcaga
ttgagcccagggaatgaatgagctaggggaagaactgagggagctgaagg
gggttgcagccccataggaagaacaatatcaactaactgcactacccaga
gctcccagggatgaaaccaccaaccaaagcgtacacacacagggctccag
ggctccagatacatacgtagcagaggatagccctatctgacatcaatggg
agggaaggcccttggtcctatgggagtttgatgctcaaatgtagggcatg
ctagtgtaggtggaagtgggtgagtgggtggaagagcaccctcatagagg
caaagaggagaggggatactgggttggcatgggagtttgtgctgtgttaa
cccttatgaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_69994387_69995549
seq2: B6Ng01-104F10.b_46_1194 (reverse)

seq1  AGAAACATGCCATTACAAAATGTCAGAATTTGAGTTTTC-TTGTGC-AGC  48
      ||||||||||   |||||||||||||||||   |||||| |||||| |||
seq2  AGAAACATGC--ATACAAAATGTCAGAATTGAGGTTTTCTTTGTGCAAGC  48

seq1  AATTATGGAATTGATGATTTTTAAGAATCGCTCCTTCCTGTGTGTCCTTC  98
      || ||||| ||||||||||||  ||||||||||||| |||||||||  ||
seq2  AA-TATGG-ATTGATGATTTT--AGAATCGCTCCTT-CTGTGTGTC--TC  91

seq1  AGATGCCAGCACAAGCCTCATTTCTTCAGGAACTCTTCCCTTCGCTGTTG  148
      |||||||||||||   |||| ||||||||||||| |||||||||||||||
seq2  AGATGCCAGCACA--GCTCA-TTCTTCAGGAACT-TTCCCTTCGCTGTTG  137

seq1  ACAATATCTCAGGAGGCTCTTTTGTTCCTCTCTATATCTCAAAACCTAGA  198
      || |||||||||||||||| |||||||||||||||||||| |||||||||
seq2  AC-ATATCTCAGGAGGCTC-TTTGTTCCTCTCTATATCTC-AAACCTAGA  184

seq1  CCCTTGTTTCTTGACTTCTCATTGCTTTCATCTTTTTTTTTTCAATGAAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGTTTCTTGACTTCTCATTGCTTTCATCTTTTTTTTTTCAATGAAA  234

seq1  GTCTCTTTTCCCCCTGCAGTTTCTGTGAGAGTAGAACCACTGTCACTTCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTTTCCCCCTGCAGTTTCTGTGAGAGTAGAACCACTGTCACTTCT  284

seq1  GACTCAAAGCTCTATCTCCTGCCTCTCACGTTGTCTGCCTCCTAATGATA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAAAGCTCTATCTCCTGCCTCTCACGTTGTCTGCCTCCTAATGATA  334

seq1  AGTGATTTTTAAGTGGATGATCTACCAAGAGAGAGAACTGGGATTTGAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTTTTAAGTGGATGATCTACCAAGAGAGAGAACTGGGATTTGAAA  384

seq1  TCATAGTTGACTCTGAAACTACTCATCAGGAGAGACAGTATTTTAGTATG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGTTGACTCTGAAACTACTCATCAGGAGAGACAGTATTTTAGTATG  434

seq1  CTGTAATGTGAAATTACCATGCTGAGTGTTCAGCACTTGTCTTGGGTATA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATGTGAAATTACCATGCTGAGTGTTCAGCACTTGTCTTGGGTATA  484

seq1  TTCACGTGCAAAACATGAATCTTTAGCTTTTCTAGGGTAATCAGTTAATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACGTGCAAAACATGAATCTTTAGCTTTTCTAGGGTAATCAGTTAATT  534

seq1  CTGCTTTCATGATTCTGAACATTAATGAAATAGTGTATTATGGTGAGAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTCATGATTCTGAACATTAATGAAATAGTGTATTATGGTGAGAGA  584

seq1  AACATTACTGAGTACCATGAAAACTTTTGGAGGAGGAGATCCTTGTAGCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTACTGAGTACCATGAAAACTTTTGGAGGAGGAGATCCTTGTAGCT  634

seq1  GGCTAGTGGCCGTCTGCCTTTATGATCTGACCTTGAGGGTTCAGAGGGCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGTGGCCGTCTGCCTTTATGATCTGACCTTGAGGGTTCAGAGGGCA  684

seq1  GAAAAGGCCCCTGTGTGCCATGCATAAGTGCCTCTGTGCCAAGGTAGCCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGCCCCTGTGTGCCATGCATAAGTGCCTCTGTGCCAAGGTAGCCT  734

seq1  CTGTGTCCAGGTAGGCAGTGTGGCACTAAAGCCTCATCTCTTTCCTCTCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCCAGGTAGGCAGTGTGGCACTAAAGCCTCATCTCTTTCCTCTCT  784

seq1  TACATTTTTGGTTGTGACCCTAACCTTTAATGGCTGAGCCATCTTTCCAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTTGGTTGTGACCCTAACCTTTAATGGCTGAGCCATCTTTCCAG  834

seq1  CCCCTGTCTCTTCTCTTATGTGGCAGCAAGATGGAATCATCAAAATGGTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGTCTCTTCTCTTATGTGGCAGCAAGATGGAATCATCAAAATGGTG  884

seq1  GTCAGAGACATAGAACTGGTTCTATGGGCAGAGTTTAAGCAGAGAAGGAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGACATAGAACTGGTTCTATGGGCAGAGTTTAAGCAGAGAAGGAA  934

seq1  GATGAATCTACAGTTATAGAGGTGATTTTCTGTTTGCAGGGGGATCCATA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATCTACAGTTATAGAGGTGATTTTCTGTTTGCAGGGGGATCCATA  984

seq1  TCATCTTAGAAGGAAACAGAAGACATTTGGTGTTAAAAATAAGATAGTTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTAGAAGGAAACAGAAGACATTTGGTGTTAAAAATAAGATAGTTG  1034

seq1  ACTGCTGACAAAATGCAGAACACACCCTCGTTCTTTGTTTCAGTCTTTTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGACAAAATGCAGAACACACCCTCGTTCTTTGTTTCAGTCTTTTG  1084

seq1  CTTTTATTTCTCTATCCCGGTTCATTTAACTTCTGTTTCTCTGACTGGGA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTTCTCTATCCCGGTTCATTTAACTTCTGTTTCTCTGACTGGGA  1134

seq1  TGTGCCATAGAATTC  1163
      |||||||||||||||
seq2  TGTGCCATAGAATTC  1149


| Home | SequenceCutter | Blast | Download |