BAC Information

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BAC

Clone NameB6Ng01-104F21
Chromosome1 (Build37)
Map Location 111,873,683 - 112,021,843
singlet/doubletdoublet
Overlap geneCdh7
Upstream geneEG666508
Downstream geneLOC100041429, EG626652, Cdh19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104F21.bB6Ng01-104F21.g
ACCDH912689DH912690
length1,1591,063
definitionDH912689|Mus musculus domesticus DNA, BAC clone: B6Ng01-104F21, 5' end.DH912690|Mus musculus domesticus DNA, BAC clone: B6Ng01-104F21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,873,683 - 111,874,840)(112,020,776 - 112,021,843)
sequence
gaattcaagagacaggtgggtgtggtgtaggcagagatgtgcagtgcatg
gctagctgtattatttctgacaattttgatttgagatgcatttttaaaaa
gtaatttttgtcccaactatactgaatccagagatacaatggtgcatctc
ttattgtattatgtgctatacaataaataaatgttcccctttctgttggt
atttgatacagaatcaaaatcaaatgtttatctctttgaaattgctcctt
agaaagaaagcattgagaaacttgacatgttacagtggaaaattaaattt
gtacttttaaatgttaaccactgacactaaatatctcaggtgttctcaag
tctagaaaggacacgctgactgtacagaggagattggagaatcgtttgca
gaacaagaagataagtgtatattttacctctgcttttcattttagctcca
cttcatttctgtggggtttgcctgctaaactctgaggagtacattctttc
aaacacagagctgaggcagcacatttagcatgttcagatcctcagagcac
aacccggggagttgtgcattctataaccctggcttaaggcattttgggat
ccttaacccatcaatgtagagtcagtttaagcattctaagtacagccaat
gttataaataggatactaacaacaatatattgtgtaatttgattcaagca
atctttaaacatatttgctgactataaacaaatggtattcatataactct
gaggtcttaatgataatctgtcccaagatgtttttccatttctgccacat
catagatatttccccaaccttcaaacaaatacaggattattgcttctaat
agattccttctattaaaatgcgaacatttcctcctaaaatccttcacaat
gcgatgctcctatctacctggagatcacgaatattttatcttcctttttg
agacttctcatcatatgaccctttcttgtcttctcatatttgaggctgtg
tgttatcctcaccatgtgctacatgctattcaaaagatgtttgtatttgt
tatttataatggacttcaaagatcactgtgtactattcccagccttggaa
aaccataaaaatgggcaggttctgaatcacgtttaccaaaatagctgata
ataactgtg
gaattctagcaattaaatatagaattggtaatatttagaatattaaatga
taatagtttgtatatattttataagaatataatttattcttagtatctat
tttacttgtttttattttaatttgctaagcaagctacttgaactttttaa
aataatttctgtagcacatatcaatgcctctaaaaatgattcagaaatgc
ttgaaaaatctagatttcagtagtccataattataattttctaaattttc
atttctaatttatgtattaaaaatgaaaatattgttataactattcctat
aactcaaacattgatatttgagttaataaaattaaacatgtctatcactt
atgtacaaatacttatgtattattaatatacaactatatatgagttaaag
gatttcttagaatgcttaatattgatgcacacctaatcctttttaatata
ttttgggattttaattatagtatcttattgtttcttttatttatacataa
cttataaaaattttatggaatttttttctgttgtatattaattatatttt
gacaatttttctgttactgctgatattaatctgaattttgtgggtatcag
atcataaatagccacaataaagaaacaccctattcttacttcattgtgca
ttagtcttcaagagtctccactatggctacgtttcttctccaacatagta
caacttgctcatcttaaatgattgagaaaactaattggaaaaactttgtt
gtcattttctaaacaaaaattcatcttctaaatgtatattcaataacatt
agcttttctttttttgataatagtagatgaatccacaggtctatcttgga
gaacttgactgctattaaattagagaaaataattgtgttcctttttagaa
caagggttatcaatgaatagatttcttctttctaaactactatgggactt
ttacctttttatacatggtgcatatatattcatgacacagtttcagccac
taaaactcaacatggatcaactacatgtaccttgaaggggatttggtgag
gctctttgttgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_111873683_111874840
seq2: B6Ng01-104F21.b_45_1203

seq1  GAATTCAAGAGACAGGTGGGTGTGGTGTAGGCAGAGATGTGCAGTGCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAGACAGGTGGGTGTGGTGTAGGCAGAGATGTGCAGTGCATG  50

seq1  GCTAGCTGTATTATTTCTGACAATTTTGATTTGAGATGCATTTTTAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCTGTATTATTTCTGACAATTTTGATTTGAGATGCATTTTTAAAAA  100

seq1  GTAATTTTTGTCCCAACTATACTGAATCCAGAGATACAATGGTGCATCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTTTGTCCCAACTATACTGAATCCAGAGATACAATGGTGCATCTC  150

seq1  TTATTGTATTATGTGCTATACAATAAATAAATGTTCCCCTTTCTGTTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTATTATGTGCTATACAATAAATAAATGTTCCCCTTTCTGTTGGT  200

seq1  ATTTGATACAGAATCAAAATCAAATGTTTATCTCTTTGAAATTGCTCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATACAGAATCAAAATCAAATGTTTATCTCTTTGAAATTGCTCCTT  250

seq1  AGAAAGAAAGCATTGAGAAACTTGACATGTTACAGTGGAAAATTAAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGCATTGAGAAACTTGACATGTTACAGTGGAAAATTAAATTT  300

seq1  GTACTTTTAAATGTTAACCACTGACACTAAATATCTCAGGTGTTCTCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTTTAAATGTTAACCACTGACACTAAATATCTCAGGTGTTCTCAAG  350

seq1  TCTAGAAAGGACACGCTGACTGTACAGAGGAGATTGGAGAATCGTTTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAAAGGACACGCTGACTGTACAGAGGAGATTGGAGAATCGTTTGCA  400

seq1  GAACAAGAAGATAAGTGTATATTTTACCTCTGCTTTTCATTTTAGCTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGAAGATAAGTGTATATTTTACCTCTGCTTTTCATTTTAGCTCCA  450

seq1  CTTCATTTCTGTGGGGTTTGCCTGCTAAACTCTGAGGAGTACATTCTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTTCTGTGGGGTTTGCCTGCTAAACTCTGAGGAGTACATTCTTTC  500

seq1  AAACACAGAGCTGAGGCAGCACATTTAGCATGTTCAGATCCTCAGAGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAGAGCTGAGGCAGCACATTTAGCATGTTCAGATCCTCAGAGCAC  550

seq1  AACCCGGGGAGTTGTGCATTCTATAACCCTGGCTTAAGGCATTTTGGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCGGGGAGTTGTGCATTCTATAACCCTGGCTTAAGGCATTTTGGGAT  600

seq1  CCTTAACCCATCAATGTAGAGTCAGTTTAAGCATTCTAAGTACAGCCAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAACCCATCAATGTAGAGTCAGTTTAAGCATTCTAAGTACAGCCAAT  650

seq1  GTTATAAATAGGATACTAACAACAATATATTGTGTAATTTGATTCAAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAAATAGGATACTAACAACAATATATTGTGTAATTTGATTCAAGCA  700

seq1  ATCTTTAAACATATTTGCTGACTATAAACAAATGGTATTCATATAACTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTAAACATATTTGCTGACTATAAACAAATGGTATTCATATAACTCT  750

seq1  GAGGTCTTAATGATAATCTGTCCCAAGATGTTTTTCCATTTCTGCCACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCTTAATGATAATCTGTCCCAAGATGTTTTTCCATTTCTGCCACAT  800

seq1  CATAGATATTTCCCCAACCTTCAAACAAATACAGGATTATTGCTTCTAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATATTTCCCCAACCTTCAAACAAATACAGGATTATTGCTTCTAAT  850

seq1  AGATTCCTTCTATTAAAATGCGAACATTTCCTCCTAAAATCCTTCACAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCTTCTATTAAAATGCGAACATTTCCTCCTAAAATCCTTCACAAT  900

seq1  GCGATGCTCCTATCTACCTGGAGAATCACGAATATTTTTATCTTCCTTTT  950
      ||||||||||||||||||||||| |||||||||| |||||||||||||||
seq2  GCGATGCTCCTATCTACCTGGAG-ATCACGAATA-TTTTATCTTCCTTTT  948

seq1  TGAGACTTCTCATCATATGACCCTTTCTTGTCTTCTCATATTTGAGGCTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTTCTCATCATATGACCCTTTCTTGTCTTCTCATATTTGAGGCTG  998

seq1  TGTGTTATCCTCACCATGTGCTACATGCTATTCAAAAGATGTTTGTATTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTATCCTCACCATGTGCTACATGCTATTCAAAAGATGTTTGTATTT  1048

seq1  GTTATTTTATAATGGACTTC-AAGATCACTGTGTTACTATTCCCCAGCCT  1099
      |||| ||||||||||||||| |||||||||||| ||||||| ||||||||
seq2  GTTA-TTTATAATGGACTTCAAAGATCACTGTG-TACTATT-CCCAGCCT  1095

seq1  TGG-AGACCATAAAA--TGGCA-GTTCTG-ATCACGTTTACC-AAATAGC  1143
      ||| | |||||||||   |||| |||||| |||||||||||| |||||||
seq2  TGGAAAACCATAAAAATGGGCAGGTTCTGAATCACGTTTACCAAAATAGC  1145

seq1  TGAATAATAACTGTG  1158
      || ||||||||||||
seq2  TG-ATAATAACTGTG  1159

seq1: chr1_112020776_112021843
seq2: B6Ng01-104F21.g_65_1127 (reverse)

seq1  TGCAACAAAGAGCCTCACCAAATCCCCTTTCAAGGGTACATGTAGTTGAT  50
      ||||||||||||||||||||||||||| ||||| ||||||||||||||||
seq2  TGCAACAAAGAGCCTCACCAAATCCCC-TTCAA-GGTACATGTAGTTGAT  48

seq1  CCATGTTGAGTTTTAGTGGCTGAAACTGTGTCATGAATATATATGCACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTGAGTTTTAGTGGCTGAAACTGTGTCATGAATATATATGCACCA  98

seq1  TGTATAAAAAGGGTAAAAGTCCCATAGTAGTTTTAGAAAGAAGAAATCTA  150
      |||||||||| ||||||||||||||||||| |||||||||||||||||||
seq2  TGTATAAAAA-GGTAAAAGTCCCATAGTAG-TTTAGAAAGAAGAAATCTA  146

seq1  TTCATTGATAACCCTTGTTTCTAAAAAGGAACACAATTATTTTCTCTAAT  200
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTCATTGATAACCCTTG-TTCTAAAAAGGAACACAATTATTTTCTCTAAT  195

seq1  TTAATAGCAGTCAAGTTCTCCAAGATAGACCTGTGGATTCATCTACTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAGCAGTCAAGTTCTCCAAGATAGACCTGTGGATTCATCTACTATT  245

seq1  ATCAAAAAAAGAAAAGCTAATGTTATTGAATATACATTTAGAAGATGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAAAAAGAAAAGCTAATGTTATTGAATATACATTTAGAAGATGAAT  295

seq1  TTTTGTTTAGAAAATGACAACAAAGTTTTTCCAATTAGTTTTCTCAATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTAGAAAATGACAACAAAGTTTTTCCAATTAGTTTTCTCAATCA  345

seq1  TTTAAGATGAGCAAGTTGTACTATGTTGGAGAAGAAACGTAGCCATAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGATGAGCAAGTTGTACTATGTTGGAGAAGAAACGTAGCCATAGTG  395

seq1  GAGACTCTTGAAGACTAATGCACAATGAAGTAAGAATAGGGTGTTTCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTCTTGAAGACTAATGCACAATGAAGTAAGAATAGGGTGTTTCTTT  445

seq1  ATTGTGGCTATTTATGATCTGATACCCACAAAATTCAGATTAATATCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGGCTATTTATGATCTGATACCCACAAAATTCAGATTAATATCAGC  495

seq1  AGTAACAGAAAAATTGTCAAAATATAATTAATATACAACAGAAAAAAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACAGAAAAATTGTCAAAATATAATTAATATACAACAGAAAAAAATT  545

seq1  CCATAAAATTTTTATAAGTTATGTATAAATAAAAGAAACAATAAGATACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAAATTTTTATAAGTTATGTATAAATAAAAGAAACAATAAGATACT  595

seq1  ATAATTAAAATCCCAAAATATATTAAAAAGGATTAGGTGTGCATCAATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAAAATCCCAAAATATATTAAAAAGGATTAGGTGTGCATCAATAT  645

seq1  TAAGCATTCTAAGAAATCCTTTAACTCATATATAGTTGTATATTAATAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCATTCTAAGAAATCCTTTAACTCATATATAGTTGTATATTAATAAT  695

seq1  ACATAAGTATTTGTACATAAGTGATAGACATGTTTAATTTTATTAACTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAGTATTTGTACATAAGTGATAGACATGTTTAATTTTATTAACTCA  745

seq1  AATATCAATGTTTGAGTTATAGGAATAGTTATAACAATATTTTCATTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCAATGTTTGAGTTATAGGAATAGTTATAACAATATTTTCATTTTT  795

seq1  AATACATAAATTAGAAATGAAAATTTAGAAAATTATAATTATGGACTACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATAAATTAGAAATGAAAATTTAGAAAATTATAATTATGGACTACT  845

seq1  GAAATCTAGATTTTTCAAGCATTTCTGAATCATTTTTAGAGGCATTGATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTAGATTTTTCAAGCATTTCTGAATCATTTTTAGAGGCATTGATA  895

seq1  TGTGCTACAGAAATTATTTTAAAAAGTTCAAGTAGCTTGCTTAGCAAATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTACAGAAATTATTTTAAAAAGTTCAAGTAGCTTGCTTAGCAAATT  945

seq1  AAAATAAAAACAAGTAAAATAGATACTAAGAATAAATTATATTCTTATAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAAACAAGTAAAATAGATACTAAGAATAAATTATATTCTTATAA  995

seq1  AATATATACAAACTATTATCATTTAATATTCTAAATATTACCAATTCTAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATACAAACTATTATCATTTAATATTCTAAATATTACCAATTCTAT  1045

seq1  ATTTAATTGCTAGAATTC  1068
      ||||||||||||||||||
seq2  ATTTAATTGCTAGAATTC  1063