BAC Information

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BAC

Clone NameB6Ng01-104P23
Chromosome1 (Build37)
Map Location 23,224,144 - 23,371,625
singlet/doubletdoublet
Overlap geneEG623356
Upstream geneLOC100040338, Rims1, Rims1, EG665725, LOC665731, 4933415F23Rik, Rn4.5s-ps4
Downstream geneOgfrl1, LOC665782, B3gat2, Smap1, 1110058L19Rik, 4921533L14Rik, LOC665808, Col9a1, Col19a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104P23.bB6Ng01-104P23.g
ACCDH913136DH913137
length1,1091,065
definitionDH913136|Mus musculus domesticus DNA, BAC clone: B6Ng01-104P23, 5' end.DH913137|Mus musculus domesticus DNA, BAC clone: B6Ng01-104P23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,370,524 - 23,371,625)(23,224,144 - 23,225,222)
sequence
gaattcagaggcacaaggtgtgactggtgctaggttatttttatgtttct
tcgttctgttacacactggcccagtcaaacaccctttgattagtacaagt
cataatgatggttttgctttctgttcttgcatttagatacaaacttaaaa
tggactgttattagagaaattatttaagccttcattctcatagttgtttg
gaggaattggaaattagtttgaaaaactttcatattaccttcttagtaca
tacttttaaaaaggcttattcttgctttccctctagattagagaaagtag
tcaaaggcatctaatattactaattctcttgtgaaatttattgttctcat
tatttgtggaaaatattttttccttgaattaaatttttcatgtggacagt
cttctgttgtacttgtgtggccctaactgtggctggctgctagtggttta
gagaggaaggcatggctaacattcatgtgaccatcttgaaggcagagcag
actcctttcatgggtgtgtgggaccttcagaattgtctctggatcatgaa
ggtgtgattgctgatgtccaggataataggccttcttggaccctatgctt
aatgggtgtcattttccccaggatatctactataatttatctgctaccat
tttatagtggttcagaaatttatgagcaattgaacatctgctatgtaaat
tagttctatctttatacctgtcctgggaaatactgaaaaatcacccttta
cattggttcttcaaatttcttttggactatttttttttaatgccatattt
tataggcaggactctggagaaatataacttagagaaaaaaatatatatat
acctttacaatataatgttttctatatatttagggatttgtcagactagc
ttacaagctgtggtccagattgtccaacagtggttgtctactaacagaac
atggaggatctagtagctgttcagttccacaaggccgggttctcatcttg
gtcttcaggatccactgggaattttgttaatggggatgaaggaatggaca
tggcagcaaagcagtaagctagcaagtcgtagagaagagagccacctcct
tttttctat
gaattcaggactggaaatcaagcaggccagtaagcaggagctgatgcaga
ggccatggagggatgttacttactgtcttgcttcccctggtttgcttatc
ttgctttcttatagaacccaatactaccatcccagggatggcactaccca
caatgggccctcccactcttgatcactaattgagaaaacaccgtacagtc
aatctcatggaggcatttcctcaagggaggctcttttctctgtgataact
ccagcttgtgtcaagttgacacacaaaagcagccagttcaccttggtttg
tcattctgtagtagcatttacttaccaagtgccttgtctcctctgagcct
agagcctccacattgaaagagtgataaatcaactagtgagaagactgagt
ctgcccaatgaagaatgtttcatattgagaatcctgtcatgatggacatt
ggcatgataaatgaagtcttatgagggcacagtttcttattgaccctaac
acagacacagtccacagagatatggagcagaacaggtaggcagcaagaga
ttgtagcctgttgagggaagcattctaatacacattaaatatacagcaag
taaacactggtttatagcagtacacatgtgcacacaaacacacacacaca
cactacttcatctggctgccagacagtagtacacaaaagctaagaacaaa
gtgacaaagggtcagttgactctgttaggtgtaaggaagctcataatgtc
agaatcagatttgaagacccttaagagagcccaggaaccagacaaggtga
tctgtgactagcattctatccctacagaagctgagactggaagctggcaa
gatgtatgtcagcttgggcttcatcagaaatccttttctacaagctaccc
aagcaaagaccttggtaggaaattgaaatctggatagcatcaactgcaaa
tctgggatgcagcatggacataggacctggaaacacttccaaataataca
gagctcagatgaacagtctcatcgctcctcataaacactggaaagctgta
acaatgactaatcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_23370524_23371625
seq2: B6Ng01-104P23.b_46_1154 (reverse)

seq1  ATAGAAAAAGGAAGGTGGCTCTC-TCTCT-CGGCCTGCTTGCTT-CTGCT  47
      ||||||||| | ||||||||||| ||||| || | |||| |||| |||| 
seq2  ATAGAAAAAAGGAGGTGGCTCTCTTCTCTACGACTTGCTAGCTTACTGC-  49

seq1  TTTGCTGGCATGTCCATTCCTTCATTCCCATT-ACAGA--TTCCAGTGGA  94
      ||||||| ||||||||||||||||| |||||| ||| |  | ||||||||
seq2  TTTGCTGCCATGTCCATTCCTTCATCCCCATTAACAAAATTCCCAGTGGA  99

seq1  TCCTGGAGACC-AGATGAGAACCCGGCCTTGTGG-ACTGAACAGCTACTA  142
      ||||| ||||| |||||||||||||||||||||| |||||||||||||||
seq2  TCCTGAAGACCAAGATGAGAACCCGGCCTTGTGGAACTGAACAGCTACTA  149

seq1  GATTCTTCCATGTTCTGTTAGTAGACAACCACTGTTGGACAATCTGGACC  192
      || || ||||||||||||||||||||||||||||||||||||||||||||
seq2  GA-TCCTCCATGTTCTGTTAGTAGACAACCACTGTTGGACAATCTGGACC  198

seq1  ACAGCTTGTAAGCTAGTCTGACAAATCCCTAAATATATAGAAAACATTAT  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTGTAAGCTAGTCTGACAAATCCCTAAATATATAGAAAACATTAT  248

seq1  ATTGTAAAGGTATATATATATTTTTTTCTCTAAGTTATATTTCTCCAGAG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAAAGGTATATATATATTTTTTTCTCTAAGTTATATTTCTCCAGAG  298

seq1  TCCTGCCTATAAAATATGGCATT-AAAAAAAATAGTCCAAAAGAAATTTG  341
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCCTGCCTATAAAATATGGCATTAAAAAAAAATAGTCCAAAAGAAATTTG  348

seq1  AAGAACCAATGTAAAGGGTGATTTTTCAGTATTTCCCAGGACAGGTATAA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCAATGTAAAGGGTGATTTTTCAGTATTTCCCAGGACAGGTATAA  398

seq1  AGATAGAACTAATTTACATAGCAGATGTTCAATTGCTCATAAATTTCTGA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGAACTAATTTACATAGCAGATGTTCAATTGCTCATAAATTTCTGA  448

seq1  ACCACTATAAAATGGTAGCAGATAAATTATAGTAGATATCCTGGGGAAAA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTATAAAATGGTAGCAGATAAATTATAGTAGATATCCTGGGGAAAA  498

seq1  TGACACCCATTAAGCATAGGGTCCAAGAAGGCCTATTATCCTGGACATCA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACCCATTAAGCATAGGGTCCAAGAAGGCCTATTATCCTGGACATCA  548

seq1  GCAATCACACCTTCATGATCCAGAGACAATTCTGAAGGTCCCACACACCC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCACACCTTCATGATCCAGAGACAATTCTGAAGGTCCCACACACCC  598

seq1  ATGAAAGGAGTCTGCTCTGCCTTCAAGATGGTCACATGAATGTTAGCCAT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGGAGTCTGCTCTGCCTTCAAGATGGTCACATGAATGTTAGCCAT  648

seq1  GCCTTCCTCTCTAAACCACTAGCAGCCAGCCACAGTTAGGGCCACACAAG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCTCTCTAAACCACTAGCAGCCAGCCACAGTTAGGGCCACACAAG  698

seq1  TACAACAGAAGACTGTCCACATGAAAAATTTAATTCAAGGAAAAAATATT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACAGAAGACTGTCCACATGAAAAATTTAATTCAAGGAAAAAATATT  748

seq1  TTCCACAAATAATGAGAACAATAAATTTCACAAGAGAATTAGTAATATTA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACAAATAATGAGAACAATAAATTTCACAAGAGAATTAGTAATATTA  798

seq1  GATGCCTTTGACTACTTTCTCTAATCTAGAGGGAAAGCAAGAATAAGCCT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCTTTGACTACTTTCTCTAATCTAGAGGGAAAGCAAGAATAAGCCT  848

seq1  TTTTAAAAGTATGTACTAAGAAGGTAATATGAAAGTTTTTCAAACTAATT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAGTATGTACTAAGAAGGTAATATGAAAGTTTTTCAAACTAATT  898

seq1  TCCAATTCCTCCAAACAACTATGAGAATGAAGGCTTAAATAATTTCTCTA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTCCTCCAAACAACTATGAGAATGAAGGCTTAAATAATTTCTCTA  948

seq1  ATAACAGTCCATTTTAAGTTTGTATCTAAATGCAAGAACAGAAAGCAAAA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAGTCCATTTTAAGTTTGTATCTAAATGCAAGAACAGAAAGCAAAA  998

seq1  CCATCATTATGACTTGTACTAATCAAAGGGTGTTTGACTGGGCCAGTGTG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATTATGACTTGTACTAATCAAAGGGTGTTTGACTGGGCCAGTGTG  1048

seq1  TAACAGAACGAAGAAACATAAAAATAACCTAGCACCAGTCACACCTTGTG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGAACGAAGAAACATAAAAATAACCTAGCACCAGTCACACCTTGTG  1098

seq1  CCTCTGAATTC  1102
      |||||||||||
seq2  CCTCTGAATTC  1109

seq1: chr1_23224144_23225222
seq2: B6Ng01-104P23.g_67_1131

seq1  GAATTCAGGACTGGAAATCAAGCAGGCCAGTAAGCAGGAGCTGATGCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGACTGGAAATCAAGCAGGCCAGTAAGCAGGAGCTGATGCAGA  50

seq1  GGCCATGGAGGGATGTTACTTACTGTCTTGCTTCCCCTGGTTTGCTTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATGGAGGGATGTTACTTACTGTCTTGCTTCCCCTGGTTTGCTTATC  100

seq1  TTGCTTTCTTATAGAACCCAATACTACCATCCCAGGGATGGCACTACCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTCTTATAGAACCCAATACTACCATCCCAGGGATGGCACTACCCA  150

seq1  CAATGGGCCCTCCCACTCTTGATCACTAATTGAGAAAACACCGTACAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGGCCCTCCCACTCTTGATCACTAATTGAGAAAACACCGTACAGTC  200

seq1  AATCTCATGGAGGCATTTCCTCAAGGGAGGCTCTTTTCTCTGTGATAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCATGGAGGCATTTCCTCAAGGGAGGCTCTTTTCTCTGTGATAACT  250

seq1  CCAGCTTGTGTCAAGTTGACACACAAAAGCAGCCAGTTCACCTTGGTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTGTGTCAAGTTGACACACAAAAGCAGCCAGTTCACCTTGGTTTG  300

seq1  TCATTCTGTAGTAGCATTTACTTACCAAGTGCCTTGTCTCCTCTGAGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTGTAGTAGCATTTACTTACCAAGTGCCTTGTCTCCTCTGAGCCT  350

seq1  AGAGCCTCCACATTGAAAGAGTGATAAATCAACTAGTGAGAAGACTGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTCCACATTGAAAGAGTGATAAATCAACTAGTGAGAAGACTGAGT  400

seq1  CTGCCCAATGAAGAATGTTTCATATTGAGAATCCTGTCATGATGGACATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCAATGAAGAATGTTTCATATTGAGAATCCTGTCATGATGGACATT  450

seq1  GGCATGATAAATGAAGTCTTATGAGGGCACAGTTTCTTATTGACCCTAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGATAAATGAAGTCTTATGAGGGCACAGTTTCTTATTGACCCTAAC  500

seq1  ACAGACACAGTCCACAGAGATATGGAGCAGAACAGGTAGGCAGCAAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACACAGTCCACAGAGATATGGAGCAGAACAGGTAGGCAGCAAGAGA  550

seq1  TTGTAGCCTGTTGAGGGAAGCATTCTAATACACATTAAATATACAGCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGCCTGTTGAGGGAAGCATTCTAATACACATTAAATATACAGCAAG  600

seq1  TAAACACTGGTTTATAGCAGTACACATGTGCACACAAACACACACACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACTGGTTTATAGCAGTACACATGTGCACACAAACACACACACACA  650

seq1  CACTACTTCATCTGGCTGCCAGACAGTAGTACACAAAAGCTAAGAACAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACTTCATCTGGCTGCCAGACAGTAGTACACAAAAGCTAAGAACAAA  700

seq1  GTGACAAAGGGTCAGTTGACTCTGTTAGGTGTAAGGAAGCTCATAATGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAAAGGGTCAGTTGACTCTGTTAGGTGTAAGGAAGCTCATAATGTC  750

seq1  AGAATCAGATTTGAAGACCCTTAAGAGAGCCCAGGAACCAGACAAGGTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCAGATTTGAAGACCCTTAAGAGAGCCCAGGAACCAGACAAGGTGA  800

seq1  TCTGTGACTAGCATTCTATCCCTACAGAAGCTGAGACTGGAAGCTGGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGACTAGCATTCTATCCCTACAGAAGCTGAGACTGGAAGCTGGCAA  850

seq1  GATGTATGTCAGCTTGGGCTTCATCAGAAATCCTTTTCTTAACAAGCTAC  900
      |||||||||||||||||||||||||||||||||||||||  |||||||||
seq2  GATGTATGTCAGCTTGGGCTTCATCAGAAATCCTTTTCT--ACAAGCTAC  898

seq1  CCAAGCAAAAGACCTTGGTAGGAAATTGAAAATCTGGGATAGCATCAAAC  950
      |||||| ||||||||||||||||||||| |||||| ||||||||||||  
seq2  CCAAGC-AAAGACCTTGGTAGGAAATTG-AAATCT-GGATAGCATCAA--  943

seq1  TTGCAAATCTGGGATTGCAGCATGGACATAGGACCTGGAAACACCTCCAA  1000
       ||||||||||||| ||||||||||||||||||||||||||||| ||| |
seq2  CTGCAAATCTGGGA-TGCAGCATGGACATAGGACCTGGAAACACTTCC-A  991

seq1  AATTATACCAGAGCTCAGATGAACAAGTCTCAATCGCT-CTCATAAAACA  1049
      ||| ||| |||||||||||||||| |||||| |||||| ||||| |||||
seq2  AATAATA-CAGAGCTCAGATGAAC-AGTCTC-ATCGCTCCTCAT-AAACA  1037

seq1  CTGGAAAGCTGTAACAAATGACTTAATCTA  1079
      ||||||||||||||| |||||| |||||||
seq2  CTGGAAAGCTGTAAC-AATGAC-TAATCTA  1065