BAC Information

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BAC

Clone NameB6Ng01-105B20
ChromosomeY (Build37)1 (Build37)
Map Location 1,544,546 - 1,544,796160,966,264 - 160,967,373
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneUty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
Downstream geneLOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105B20.bB6Ng01-105B20.g
ACCDH913222DH913223
length9791,085
definitionDH913222|Mus musculus domesticus DNA, BAC clone: B6Ng01-105B20, 5' end.DH913223|Mus musculus domesticus DNA, BAC clone: B6Ng01-105B20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,544,546 - 1,544,796)(160,966,264 - 160,967,373)
sequence
gaattcaagaatatattggcaaaagactgcaagaaggcaaaaagcattta
aaacttctttaaaaattataaaacattacaaaagtcagggctattcatat
attaaattgtttatgattctgttttatttagttgtagtggctattcctgg
ttgtcaacttgactatatttggaatgaactacaatccagaattggatgcc
tcaccagtgaccctaatctggaggctgggagatagacgtttctgatctga
atcttagtatggagatcttgaggcatagtggctatggattccagaagatt
aagacagggagatctccaaattcaaggtcatctgggattaaaggtgtggt
gggacatacctttaatctgggctactccttctgctggagaccatataagg
acattggaagaaggaagtcttgctctcgctccttcgcctgcttgccgtgt
gggactgagtaactgctagatccttggacttccatttacagcttactact
gagccattgttgggaataggactgcagactgtaagtcatcaataaattcc
tttactatatagagactatccataagttctgtgactctagagaaccctga
ctaatacagaaattggtaccagcatagtggggtattcctgtgacaacctg
accatgttttggggaggactgtggaaggactttggaactttgggatagaa
gatacattcagtgttaagagctctgtcagatgttgtgtaggagcttggaa
gataatgttgagaacagtgcagaagatggaggcctggcttgtgaaatttc
agagggaaaattaaagactcttcaggccattgttattttggagtttgatt
attctgtggttctggttagctggggctgaagaatcagctgtgattaacaa
gattccagaactactaaagcaaaacctttgcattacttggactattgatg
ctggtagctggagctaagaaatagtggtg
gaattccttttcctagtagttattcagtagacagcttcctctgtccagat
aagggatccttgcagtctttggcatagcaatagcaggaagctgatatctg
tgtagctacacaaattgaaagcaactaaacaaggccggtctccttcacct
gcctaattaaatgtgtaaactacaaagtaaggagtctttacggcgaggca
gcccataatctgaactttgctcttaaccacgcaggtagcttgggcacctc
tactttaaatttgcttctgtctaatatttctttattagtagttgttgcta
atttgtgtttaggttgaagcttagtccccaaaagggagagagaaagttac
aaatgaggacgacatgttatcagaaggccggtgagacctagctcgaatgt
gagcaccgtgccagttctcatatgtccatagcccaggccaaaagctgccc
tcagctatgcatgcacagcttccattgacgtcagtaagaactgtgctcat
gtaacaggaggcagaaatttggctctttgattttaatagaattaaatgcc
aaacgttttgctgatgcaggttgcaaatttaaatccccaaagggctagag
aaaaaaaaaatgcaacagaatactgctctgttggcaatctcatcagttgc
agaggccgtgtaattaagtgactaccaaatttctcaagcctaacttggaa
gcctttaacactattgtgcctgtgtgctgtgtgtggcctcccattgcaga
aagatctttaaatgccattccaagatttattctggagcttcagatacaat
cctaacacaaaactctgattccttgtcagttgtagagttctgtttctagt
aaggacattcattcacaaagatgctaaaatgagctcatggtgccaggcac
tccatgacccagcttagatgatcggtgtgttaatgtaatagatgagagcg
tagcatcttacagtacttggctcagtttctgtctatttatgctcagacaa
atccatagcttgtctatattgtgtggttctaaaatctatcattgtgcatg
atgttaacattggtctcccgacctgacatctggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1544546_1544796
seq2: B6Ng01-105B20.b_175_413 (reverse)

seq1  CCCAGATTAAAGGTGTGTTCCACCACACCTTTAATCCCAGATGAAAGGTG  50
      |||||||||||||| ||| |||||||||||||||||||||||||      
seq2  CCCAGATTAAAGGTATGTCCCACCACACCTTTAATCCCAGATGA------  44

seq1  TAGCCCAGATTAAAGGTGTGTTCCTTAAACTCGGAGAT---------TCA  91
                            |||| || | ||||||         | |
seq2  ----------------------CCTTGAATTTGGAGATCTCCCTGTCTTA  72

seq1  ATCTTCTGGAATCCATAGCCACTATGGCTCAAGATCTCCATACCAAGATC  141
      |||||||||||||||||||||||||| |||||||||||||||| ||||| 
seq2  ATCTTCTGGAATCCATAGCCACTATGCCTCAAGATCTCCATACTAAGATT  122

seq1  CAGATAAG-------GATCTCCAAGCCTCCAGATAAGGGTCACTGGTGAG  184
      ||||| ||        |||||| ||||||||||| |||||||||||||||
seq2  CAGATCAGAAACGTCTATCTCCCAGCCTCCAGATTAGGGTCACTGGTGAG  172

seq1  CCTTCCAATTCCGGATTGTAGTTCATTCCAAATATTGTCAAGTTGACAAC  234
       | |||||||| ||||||||||||||||||||||| ||||||||||||||
seq2  GCATCCAATTCTGGATTGTAGTTCATTCCAAATATAGTCAAGTTGACAAC  222

seq1  CAGGAATAGCCACTACA  251
      |||||||||||||||||
seq2  CAGGAATAGCCACTACA  239

seq1: chr1_160966264_160967373
seq2: B6Ng01-105B20.g_67_1151

seq1  GAATTCCTTTTCCTAGTAGTTATTCAGTAGACAGCTTCCTCTGTCCAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTTCCTAGTAGTTATTCAGTAGACAGCTTCCTCTGTCCAGAT  50

seq1  AAGGGATCCTTGCAGTCTTTGGCATAGCAATAGCAGGAAGCTGATATCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGATCCTTGCAGTCTTTGGCATAGCAATAGCAGGAAGCTGATATCTG  100

seq1  TGTAGCTACACAAATTGAAAGCAACTAAACAAGGCCGGTCTCCTTCACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCTACACAAATTGAAAGCAACTAAACAAGGCCGGTCTCCTTCACCT  150

seq1  GCCTAATTAAATGTGTAAACTACAAAGTAAGGAGTCTTTACGGCGAGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAATTAAATGTGTAAACTACAAAGTAAGGAGTCTTTACGGCGAGGCA  200

seq1  GCCCATAATCTGAACTTTGCTCTTAACCACGCAGGTAGCTTGGGCACCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATAATCTGAACTTTGCTCTTAACCACGCAGGTAGCTTGGGCACCTC  250

seq1  TACTTTAAATTTGCTTCTGTCTAATATTTCTTTATTAGTAGTTGTTGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTAAATTTGCTTCTGTCTAATATTTCTTTATTAGTAGTTGTTGCTA  300

seq1  ATTTGTGTTTAGGTTGAAGCTTAGTCCCCAAAAGGGAGAGAGAAAGTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGTTTAGGTTGAAGCTTAGTCCCCAAAAGGGAGAGAGAAAGTTAC  350

seq1  AAATGAGGACGACATGTTATCAGAAGGCCGGTGAGACCTAGCTCGAATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGGACGACATGTTATCAGAAGGCCGGTGAGACCTAGCTCGAATGT  400

seq1  GAGCACCGTGCCAGTTCTCATATGTCCATAGCCCAGGCCAAAAGCTGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACCGTGCCAGTTCTCATATGTCCATAGCCCAGGCCAAAAGCTGCCC  450

seq1  TCAGCTATGCATGCACAGCTTCCATTGACGTCAGTAAGAACTGTGCTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTATGCATGCACAGCTTCCATTGACGTCAGTAAGAACTGTGCTCAT  500

seq1  GTAACAGGAGGCAGAAATTTGGCTCTTTGATTTTAATAGAATTAAATGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAGGAGGCAGAAATTTGGCTCTTTGATTTTAATAGAATTAAATGCC  550

seq1  AAACGTTTTGCTGATGCAGGTTGCAAATTTAAATCCCCAAAGGGCTAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTTTTGCTGATGCAGGTTGCAAATTTAAATCCCCAAAGGGCTAGAG  600

seq1  AAAAAAAAAATGCAACAGAATACTGCTCTGTTGGCAATCTCATCAGTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAATGCAACAGAATACTGCTCTGTTGGCAATCTCATCAGTTGC  650

seq1  AGAGGCCGTGTAATTAAGTGACTACCAAATTTCTCAAGCCTAACTTGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCGTGTAATTAAGTGACTACCAAATTTCTCAAGCCTAACTTGGAA  700

seq1  GCCTTTAACACTATTGTGCCTGTGTGCTGTGTGTGGCCTCCCATTGCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAACACTATTGTGCCTGTGTGCTGTGTGTGGCCTCCCATTGCAGA  750

seq1  AAGATCTTTAAATGCCATTCCAAGATTTATTCTGGAGCTTCAGATACAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTTTAAATGCCATTCCAAGATTTATTCTGGAGCTTCAGATACAAT  800

seq1  CCTAACACAAAACTCTGATTCCTTGTCAGTTGTAGAGTTCTGTTTCTAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACACAAAACTCTGATTCCTTGTCAGTTGTAGAGTTCTGTTTCTAGT  850

seq1  AAGGACATTCATTCACAAAGATGCTAAAATGAGCTCATGGTGCCAAGGCA  900
      |||||||||||||||||||||||||||||||||||||||||||| |||| 
seq2  AAGGACATTCATTCACAAAGATGCTAAAATGAGCTCATGGTGCC-AGGC-  898

seq1  ACTCCATGACCCAGCTTAGATGATCGGTGTGTTAATGTAATAGAATTGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||  || |
seq2  ACTCCATGACCCAGCTTAGATGATCGGTGTGTTAATGTAATAGA--TG-A  945

seq1  GAGGCGTAGCATTCTTACAGTACTTGGCTTCAGTTTCTGTCTAATTTATG  1000
      || |||||||| |||||||||||||||| ||||||||||||| |||||||
seq2  GA-GCGTAGCA-TCTTACAGTACTTGGC-TCAGTTTCTGTCT-ATTTATG  991

seq1  CTCAGACATATCCATAGCTTTGTCTTAATATTTGTGTGGTTTCTAAAAAT  1050
      |||||||| ||||||||| ||||||  ||| |||||||| |||| |||||
seq2  CTCAGACAAATCCATAGC-TTGTCT--ATA-TTGTGTGG-TTCT-AAAAT  1035

seq1  CTAATTTAATTTTGTGCAATGATGTTAACAATTGGGTCTCCCAGACCTGA  1100
      |||   | |  |||||| ||||||||||||  | |||||||| |||||||
seq2  CTA---TCA--TTGTGC-ATGATGTTAACA--TTGGTCTCCC-GACCTGA  1076

seq1  GCATCTGGTA  1110
       |||||||||
seq2  -CATCTGGTA  1085