BAC Information

Click to search

BAC

Clone NameB6Ng01-105D11
Chromosome1 (Build37)
Map Location 130,938,408 - 131,103,630
singlet/doubletdoublet
Overlap genenone
Upstream geneZranb3, EG666784, R3hdm1, LOC667109, LOC100042111, Ubxd2, Lct, Mcm6, Dars, LOC620659, Cxcr4
Downstream geneLOC100042732, Thsd7b, LOC100042745, LOC100042740
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105D11.bB6Ng01-105D11.g
ACCDH913298DH913299
length928864
definitionDH913298|Mus musculus domesticus DNA, BAC clone: B6Ng01-105D11, 5' end.DH913299|Mus musculus domesticus DNA, BAC clone: B6Ng01-105D11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,102,703 - 131,103,630)(130,938,408 - 130,939,268)
sequence
gaattcaagcaggtgagtctaagggagccattcctattcaaaccaataca
cagcccaatttccagctgcccacacttggagaatccaagcccttactggc
tacataccaagaaagacagatgtgcccagccaaaggccacttgtttttct
acagcccagggaaggaaaatgcaggtgtgtggttacccctttagatgagt
tcaatattcttgttcaatctcaatccctggtgttttatgagaagaagcga
caggtgctgtgagggtgagtaggttgatgaggcgctcgctatagatgggt
ttcattcctaactgcgtttcccttctctgccgctggtatttcctgggacc
aactcccataaagcagatgccttaggactctgtcaagggaactgcatttg
agaaactcaaagtaaaataattactcctctactcgggatgcttcatagtg
acaattctcctgcactgtgcttacctgctaggcacaaagtcctcagttca
atccccaatacgacatagactgtgtgatgttacacacctgctgactcagc
acccaggaggacaaaggagaaggatccaaacctcaagatgatcttgagcc
agattctgagtttaaggccagcctggtaacccttagctcactaaagtcca
acaaattaatggtaaaaacaggatctcagaaactgcacagaacatgggat
acatttatttcattttatatgctttctttttataatcatatttaaatata
ctttaaaatccaacaatgtattcatgtttaccatgcaaataggaagactg
acttcatcatcccaacctacaacaacaaaacaacaacaacaacaacaaca
acaaccagggatggtattgtatactttattctcaaaaataaaagtgttac
ttgaaattggtttatgtgctcaggctgt
gaattctatattcagactacctttccacatgcatccagaatgtaagtata
taaattccccacttccagaagttttaatgatgtcagtgacaattcagaag
ttttcagaaccaatattctactgtcaagttctggctggttggttctcata
gagttgctattttagcctgaagatttgcataattttttactggtctaaaa
ctatgcaggtgagtatttgatggggaaacttctaggtttgtttgtcagct
catttctgggtctaaatgaactacagtcttatcatacttttagaacgtga
cactctgtattaccatctttacccacctatcactcagattgcaaatcggg
ttttctttcaagctcccatctctcagtatgtgatcctgaaatctgtctac
ttctgtttggctcatctctctccgtggtagttcctccctcctgcccattg
tatggttgcttctgcttttgagtagtactctgatgagcctgttagacatc
ccttttaaagaacattgcaagagcatacagggctgctgcttctcactgag
cccatttggtcccattcaccctgcacccatcttcactgctttgggtcctt
tggcttctctgggcactggggttgtgtgacacttatttttttttgggggg
gtgagagacatgaatagtatctatctgtctcaataggacactgacaacag
ataaaccatttcaccctaagtctagcttaaaccaatgattttttgttctg
gggcttgcttcattggaaactaagcatgagtcaaacccaccaaagtatgg
gtgataactcacaaagccatatcctccgccctcaactagacagaattgtg
ggggtgaagggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_131102703_131103630
seq2: B6Ng01-105D11.b_46_973 (reverse)

seq1  ACAGCCTGAGCACATAAACCAATCTCAAGTAACACTTTTATTTATTGAGA  50
      ||||||||||||||||||||||| ||||||||||||||||||| ||||||
seq2  ACAGCCTGAGCACATAAACCAATTTCAAGTAACACTTTTATTT-TTGAGA  49

seq1  ATAAAAGTATACACTACCATCCCTGGTTGTTGTTGTTGTTGTTGTTGTTG  100
      || |||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AT-AAAGTATACAATACCATCCCTGGTTGTTGTTGTTGTTGTTGTTGTTG  98

seq1  TTTTGTTGTTTGTAGGTTGGGATGATTGAAGTCAGGTCTTCCTATTTGCA  150
      |||||||| |||||||||||||||| |||||||| |||||||||||||||
seq2  TTTTGTTG-TTGTAGGTTGGGATGA-TGAAGTCA-GTCTTCCTATTTGCA  145

seq1  TGGT-AACATGAATACATTGTTGGA-TTTAAAGTATATTTAAATATGATT  198
      |||| |||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGGTAAACATGAATACATTGTTGGATTTTAAAGTATATTTAAATATGATT  195

seq1  ATAAAAGAAAAGCATAT-AAATGAAAT-AATGTATCCCATGTTCTGTGCA  246
      ||||||  ||||||||| ||||||||| ||||||||||||||||||||||
seq2  ATAAAAAGAAAGCATATAAAATGAAATAAATGTATCCCATGTTCTGTGCA  245

seq1  GTTTCTGAGATCCTG-TTTTGCCATTAATTTGTTGGACTTTAGTGAGCTA  295
      ||||||||||||||| |||| |||||||||||||||||||||||||||||
seq2  GTTTCTGAGATCCTGTTTTTACCATTAATTTGTTGGACTTTAGTGAGCTA  295

seq1  AGGGTTACCAGGCTGGCCTTAAACTCAGAATCTGGCTCAAGATCATCTTG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTACCAGGCTGGCCTTAAACTCAGAATCTGGCTCAAGATCATCTTG  345

seq1  AGGTTTGGATCCTTCTCCTTTGTCCTCCTGGGTGCTGAGTCAGCAGGTGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGGATCCTTCTCCTTTGTCCTCCTGGGTGCTGAGTCAGCAGGTGT  395

seq1  GTAACATCACACAGTCTATGTCGTATTGGGGATTGAACTGAGGACTTTGT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACATCACACAGTCTATGTCGTATTGGGGATTGAACTGAGGACTTTGT  445

seq1  GCCTAGCAGGTAAGCACAGTGCAGGAGAATTGTCACTATGAAGCATCCCG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGCAGGTAAGCACAGTGCAGGAGAATTGTCACTATGAAGCATCCCG  495

seq1  AGTAGAGGAGTAATTATTTTACTTTGAGTTTCTCAAATGCAGTTCCCTTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAGGAGTAATTATTTTACTTTGAGTTTCTCAAATGCAGTTCCCTTG  545

seq1  ACAGAGTCCTAAGGCATCTGCTTTATGGGAGTTGGTCCCAGGAAATACCA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTCCTAAGGCATCTGCTTTATGGGAGTTGGTCCCAGGAAATACCA  595

seq1  GCGGCAGAGAAGGGAAACGCAGTTAGGAATGAAACCCATCTATAGCGAGC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCAGAGAAGGGAAACGCAGTTAGGAATGAAACCCATCTATAGCGAGC  645

seq1  GCCTCATCAACCTACTCACCCTCACAGCACCTGTCGCTTCTTCTCATAAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATCAACCTACTCACCCTCACAGCACCTGTCGCTTCTTCTCATAAA  695

seq1  ACACCAGGGATTGAGATTGAACAAGAATATTGAACTCATCTAAAGGGGTA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGGGATTGAGATTGAACAAGAATATTGAACTCATCTAAAGGGGTA  745

seq1  ACCACACACCTGCATTTTCCTTCCCTGGGCTGTAGAAAAACAAGTGGCCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACACCTGCATTTTCCTTCCCTGGGCTGTAGAAAAACAAGTGGCCT  795

seq1  TTGGCTGGGCACATCTGTCTTTCTTGGTATGTAGCCAGTAAGGGCTTGGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGGGCACATCTGTCTTTCTTGGTATGTAGCCAGTAAGGGCTTGGA  845

seq1  TTCTCCAAGTGTGGGCAGCTGGAAATTGGGCTGTGTATTGGTTTGAATAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCAAGTGTGGGCAGCTGGAAATTGGGCTGTGTATTGGTTTGAATAG  895

seq1  GAATGGCTCCCTTAGACTCACCTGCTTGAATTC  928
      |||||||||||||||||||||||||||||||||
seq2  GAATGGCTCCCTTAGACTCACCTGCTTGAATTC  928

seq1: chr1_130938408_130939268
seq2: B6Ng01-105D11.g_70_933

seq1  GAATTCTATATTCAGACTACCTTTCCACATGCATCCAGAATGTAAGTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATATTCAGACTACCTTTCCACATGCATCCAGAATGTAAGTATA  50

seq1  TAAATTCCCCACTTCCAGAAGTTTTAATGATGTCAGTGACAATTCAGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCCCCACTTCCAGAAGTTTTAATGATGTCAGTGACAATTCAGAAG  100

seq1  TTTTCAGAACCAATATTCTACTGTCAAGTTCTGGCTGGTTGGTTCTCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGAACCAATATTCTACTGTCAAGTTCTGGCTGGTTGGTTCTCATA  150

seq1  GAGTTGCTATTTTAGCCTGAAGATTTGCATAATTTTTTACTGGTCTAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGCTATTTTAGCCTGAAGATTTGCATAATTTTTTACTGGTCTAAAA  200

seq1  CTATGCAGGTGAGTATTTGATGGGGAAACTTCTAGGTTTGTTTGTCAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCAGGTGAGTATTTGATGGGGAAACTTCTAGGTTTGTTTGTCAGCT  250

seq1  CATTTCTGGGTCTAAATGAACTACAGTCTTATCATACTTTTAGAACGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTGGGTCTAAATGAACTACAGTCTTATCATACTTTTAGAACGTGA  300

seq1  CACTCTGTATTACCATCTTTACCCACCTATCACTCAGATTGCAAATCGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGTATTACCATCTTTACCCACCTATCACTCAGATTGCAAATCGGG  350

seq1  TTTTCTTTCAAGCTCCCATCTCTCAGTATGTGATCCTGAAATCTGTCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTCAAGCTCCCATCTCTCAGTATGTGATCCTGAAATCTGTCTAC  400

seq1  TTCTGTTTGGCTCATCTCTCTCCGTGGTAGTTCCTCCCTCCTGCCCATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTGGCTCATCTCTCTCCGTGGTAGTTCCTCCCTCCTGCCCATTG  450

seq1  TATGGTTGCTTCTGCTTTTGAGTAGTACTCTGATGAGCCTGTTAGACATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTTGCTTCTGCTTTTGAGTAGTACTCTGATGAGCCTGTTAGACATC  500

seq1  CCTTTTAAAGAACATTGCAAGAGCATACAGGGCTGCTGCTTCTCACTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTAAAGAACATTGCAAGAGCATACAGGGCTGCTGCTTCTCACTGAG  550

seq1  CCCATTTGGTCCCATTCACCCTGCACCCATCTTCACTGCTTTGGGTCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTGGTCCCATTCACCCTGCACCCATCTTCACTGCTTTGGGTCCTT  600

seq1  TGGCTTCTCTGGGCACTGGGGTTGTGTGACACTTA-TTTTTTTTGGGGGG  649
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGGCTTCTCTGGGCACTGGGGTTGTGTGACACTTATTTTTTTTTGGGGGG  650

seq1  GTGAGAGACATGAATAGTATCTATCTGTCTCAATAGGACACTGACAACAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGACATGAATAGTATCTATCTGTCTCAATAGGACACTGACAACAG  700

seq1  ATAAACCATTTCACCC-AAGTCTAGCTTAAACCAATGA-TTTTTGTTCTG  747
      |||||||||||||||| ||||||||||||||||||||| |||||||||||
seq2  ATAAACCATTTCACCCTAAGTCTAGCTTAAACCAATGATTTTTTGTTCTG  750

seq1  GGGCTTGCTTCATTGGAAACTAAGCATGAGTCAAAACCCACCAAAGTATG  797
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGGCTTGCTTCATTGGAAACTAAGCATGAGTC-AAACCCACCAAAGTATG  799

seq1  GGTGATAACTCACAAAGCCATATCCTCCGCCCTCAACTAGACAGAA-TGT  846
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGTGATAACTCACAAAGCCATATCCTCCGCCCTCAACTAGACAGAATTGT  849

seq1  GGGGGTGAGGGGAGA  861
      |||||||| ||||||
seq2  GGGGGTGAAGGGAGA  864