BAC Information

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BAC

Clone NameB6Ng01-105E19
Chromosome1 (Build37)
Map Location 135,620,812 - 135,803,755
singlet/doubletdoublet
Overlap geneAtp2b4, Optc
Upstream geneNfasc, Lrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b, Plekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1
Downstream genePrelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1, Myog, Ppfia4, LOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1, Klhl12, Rabif, 4931440L10Rik, Jarid1b, LOC100042418, Syt2, Ppp1r12b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105E19.bB6Ng01-105E19.g
ACCDH913362DH913363
length849810
definitionDH913362|Mus musculus domesticus DNA, BAC clone: B6Ng01-105E19, 5' end.DH913363|Mus musculus domesticus DNA, BAC clone: B6Ng01-105E19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,620,812 - 135,621,656)(135,802,945 - 135,803,755)
sequence
gaattctggtatgtgacagaaagttcccccaaaggccagtattgacaaca
gctttgtgagccgagtgtgatgggattcccagttagaggcattgtacaca
ctgctgacctggtgcaaatatagaagaagagactcccctggagcagtgag
agcacaaggaggctggacatggattcttctggaattctgccagtgtcttt
ttttcttgtgatctaactgtatcctcaacacacgtctgtaacaaacgcca
gccatgtgtatacagtgcttagaccaggctccattgtgtcctcctagtaa
atttgtgaatatgatcacagtctttgggacataggctaatataaaaatca
gcgctttcttaaacatttgggcacattaggaccctaaactccaggtcttc
tggtccaggagcctcgagtggtgcccgagcgtctgcatttccataggttt
ccaggtagtgcaggtgcactgggagttgaggtacattttttttttaaatt
cattttatgtgtatggtgttttgcttgcataggtgtatacataccctatg
tgtgcatggtgcctgccagcaaagggagtcagatcacctgggactggagt
tatagatgcttgtgagttgcttttgtgtgtgctggaaactgaaccttcac
cctctgttagagtagacagtgctctttaacactgaactgtctctccatgt
ccacacagggacacactttaagagccgctgctgtggagtcggactccaga
gataacttcagacatccataaggtgtgaatcctattttggattctgacct
caaactcagatatttgactgcctctgtatctgaagaaagctgggattaa
gaattcctgttcattaagtgaagaaatgagattagggacccctgaggaaa
aaggaagggaaacagcagggcacttgaaagaatggggaatctaattagac
acatgcatccctggccaaccactcgtcctctccctggccaatagatgagg
gggtgtctagctgtcccctgctctgacaggcagtcatcatctccaccaga
agctccctggaagctgctgagccagacggaaccaaaagcatctaaaaggt
aaggtccaaggttggaggcctcatgcccactggcacaaaagcaaagggat
ggagtcggggctgtggcaggaactgggcagagaatggcaagagtacaagg
ctctgatcaaagaagctgcgaggggcttccgggtggtcagtaaactgcct
tgggggtggtcttgaagagcatagatttcagtttggagtgggaataggga
acagagagatacgacctcttactactgctggggacttaccattcagcccg
gctgagattaggaagaaacctgcgcaggcggctttgggagggctgtgtaa
tcagctgcagatggatggctacgatgctgcaggcacttccgtatccacag
cacactcagccctccacctgcctgcacagatgtgagtgacctgcagacga
cgtctgtgctcatacgcctgcacaccatgtcctcccaggaacccaagtgc
agacacatatgtatacagatagctgccgagcttttctgatggcaaaacac
tgcagaacctcatatcacccctctgctttccacacgtgtttctaaaagcc
tgcattctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_135620812_135621656
seq2: B6Ng01-105E19.b_31_879

seq1  GAATTCTGGTATGTGACAGAAAGTTCCCCCAAAGGCCAGTATTGACAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGTATGTGACAGAAAGTTCCCCCAAAGGCCAGTATTGACAACA  50

seq1  GCTTTGTGAGCCGAGTGTGATGGGATTCCCAGTTAGAGGCATTGTACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTGAGCCGAGTGTGATGGGATTCCCAGTTAGAGGCATTGTACACA  100

seq1  CTGCTGACCTGGTGCAAATATAGAAGAAGAGACTCCCCTGGAGCAGTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGACCTGGTGCAAATATAGAAGAAGAGACTCCCCTGGAGCAGTGAG  150

seq1  AGCACAAGGAGGCTGGACATGGATTCTTCTGGAATTCTGCCAGTGTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAAGGAGGCTGGACATGGATTCTTCTGGAATTCTGCCAGTGTCTTT  200

seq1  TTTTCTTGTGATCTAACTGTATCCTCAACACACGTCTGTAACAAACGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTGTGATCTAACTGTATCCTCAACACACGTCTGTAACAAACGCCA  250

seq1  GCCATGTGTATACAGTGCTTAGACCAGGCTCCATTGTGTCCTCCTAGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGTGTATACAGTGCTTAGACCAGGCTCCATTGTGTCCTCCTAGTAA  300

seq1  ATTTGTGAATATGATCACAGTCTTTGGGACATAGGCTAATATAAAAATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGAATATGATCACAGTCTTTGGGACATAGGCTAATATAAAAATCA  350

seq1  GCGCTTTCTTAAACATTTGGGCACATTAGGACCCTAAACTCCAGGTCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTTTCTTAAACATTTGGGCACATTAGGACCCTAAACTCCAGGTCTTC  400

seq1  TGGTCCAGGAGCCTCGAGTGGTGCCCGAGCGTCTGCATTTCCATAGGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCAGGAGCCTCGAGTGGTGCCCGAGCGTCTGCATTTCCATAGGTTT  450

seq1  CCAGGTAGTGCAGGTGCACTGGGAGTTGAGGTACATTTTTTTTTTAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTAGTGCAGGTGCACTGGGAGTTGAGGTACATTTTTTTTTTAAATT  500

seq1  CATTTTATGTGTATGGTGTTTTGCTTGCATAGGTGTATACATACCCTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTATGTGTATGGTGTTTTGCTTGCATAGGTGTATACATACCCTATG  550

seq1  TGTGCATGGTGCCTGCCAGCAAAGGGAGTCAGATCACCTGGGACTGGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATGGTGCCTGCCAGCAAAGGGAGTCAGATCACCTGGGACTGGAGT  600

seq1  TATAGATGCTTGTGAGTTGC-TTTGTGTGTGCTGGAAACTGAACCTTCAC  649
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TATAGATGCTTGTGAGTTGCTTTTGTGTGTGCTGGAAACTGAACCTTCAC  650

seq1  CCTCTGTTAGAGTAGACAGTGCTCTTTAACACTGAACTGTCTCTCCATGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTTAGAGTAGACAGTGCTCTTTAACACTGAACTGTCTCTCCATGT  700

seq1  CCACACA-GGACACACTTTAAGAGCCGCTGCTGTGGAGTCGGACTCCAGA  748
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACAGGGACACACTTTAAGAGCCGCTGCTGTGGAGTCGGACTCCAGA  750

seq1  GATAAC-TCAGACATCCATAAGGTGTGAATCCTA-TTTGGATTCTGACCT  796
      |||||| ||||||||||||||||||||||||||| |||||||||||||||
seq2  GATAACTTCAGACATCCATAAGGTGTGAATCCTATTTTGGATTCTGACCT  800

seq1  CAAACTCAGATATTTGACTGCCTCTGTATCCTGAGAGAGCTGGGATTAA  845
      ||||||||||||||||||||||||||||||   ||| ||||||||||||
seq2  CAAACTCAGATATTTGACTGCCTCTGTATCTGAAGAAAGCTGGGATTAA  849

seq1: chr1_135802945_135803755
seq2: B6Ng01-105E19.g_71_880 (reverse)

seq1  TTAGAAATGCAGCATTTTAGAAACACGTTGTGGAAAGCAGAGGGTTGGTA  50
      |||| |||||||  ||||||||||||| |||||||||||||||| || ||
seq2  TTAG-AATGCAGGCTTTTAGAAACACG-TGTGGAAAGCAGAGGGGTGATA  48

seq1  TGAGGTTCTGCAGTGTTTTGCCATCAG-AAAGCTCGGCAGCTATCTGTAT  99
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGAGGTTCTGCAGTGTTTTGCCATCAGAAAAGCTCGGCAGCTATCTGTAT  98

seq1  ACATATGTGTCTGCACTTGGGTTCCTGGGAGGACATGGTGTGCAGGCGTA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGTGTCTGCACTTGGGTTCCTGGGAGGACATGGTGTGCAGGCGTA  148

seq1  TGAGCACAGACGTCGTCTGCAGGTCACTCACATCTGTGCAGGCAGGTGGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACAGACGTCGTCTGCAGGTCACTCACATCTGTGCAGGCAGGTGGA  198

seq1  GGGCTGAGTGTGCTGTGGATACGGAAGTGCCTGCAGCATCGTAGCCATCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGAGTGTGCTGTGGATACGGAAGTGCCTGCAGCATCGTAGCCATCC  248

seq1  ATCTGCAGCTGATTACACAGCCCTCCCAAAGCCGCCTGCGCAGGTTTCTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCAGCTGATTACACAGCCCTCCCAAAGCCGCCTGCGCAGGTTTCTT  298

seq1  CCTAATCTCAGCCGGGCTGAATGGTAAGTCCCCAGCAGTAGTAAGAGGTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATCTCAGCCGGGCTGAATGGTAAGTCCCCAGCAGTAGTAAGAGGTC  348

seq1  GTATCTCTCTGTTCCCTATTCCCACTCCAAACTGAAATCTATGCTCTTCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTCTCTGTTCCCTATTCCCACTCCAAACTGAAATCTATGCTCTTCA  398

seq1  AGACCACCCCCAAGGCAGTTTACTGACCACCCGGAAGCCCCTCGCAGCTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCACCCCCAAGGCAGTTTACTGACCACCCGGAAGCCCCTCGCAGCTT  448

seq1  CTTTGATCAGAGCCTTGTACTCTTGCCATTCTCTGCCCAGTTCCTGCCAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATCAGAGCCTTGTACTCTTGCCATTCTCTGCCCAGTTCCTGCCAC  498

seq1  AGCCCCGACTCCATCCCTTTGCTTTTGTGCCAGTGGGCATGAGGCCTCCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCGACTCCATCCCTTTGCTTTTGTGCCAGTGGGCATGAGGCCTCCA  548

seq1  ACCTTGGACCTTACCTTTTAGATGCTTTTGGTTCCGTCTGGCTCAGCAGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGACCTTACCTTTTAGATGCTTTTGGTTCCGTCTGGCTCAGCAGC  598

seq1  TTCCAGGGAGCTTCTGGTGGAGATGATGACTGCCTGTCAGAGCAGGGGAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGGAGCTTCTGGTGGAGATGATGACTGCCTGTCAGAGCAGGGGAC  648

seq1  AGCTAGACACCCCCTCATCTATTGGCCAGGGAGAGGACGAGTGGTTGGCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGACACCCCCTCATCTATTGGCCAGGGAGAGGACGAGTGGTTGGCC  698

seq1  AGGGATGCATGTGTCTAATTAGATTCCCCATTCTTTCAAGTGCCCTGCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGCATGTGTCTAATTAGATTCCCCATTCTTTCAAGTGCCCTGCTG  748

seq1  TTTCCCTTCCTTTTTCCTCAGGGGTCCCTAATCTCATTTCTTCACTTAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTTCCTTTTTCCTCAGGGGTCCCTAATCTCATTTCTTCACTTAAT  798

seq1  GAACAGGAATTC  811
      ||||||||||||
seq2  GAACAGGAATTC  810